Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,864,753 | G→A | 8.0% | A29A (GCG→GCA) | hda → | DnaA regulatory inactivator Hda |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,864,753 | 0 | G | A | 8.0% | 142.1 / 2.4 | 51 | A29A (GCG→GCA) | hda | DnaA regulatory inactivator Hda |
Reads supporting (aligned to +/- strand): ref base G (21/25); new base A (2/2); total (23/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.49e-01 |
GTATAGACTTTGCAGATTGTTCACCAAAGGCCCCCAGCGGTCCCGTCGACCGCCCGCGAGCATGAAACCACCGATCCAGTTGCCCCTGGGTGTGCGCCTGCGCGATGACGCCACCTTCATCAACTACTATCCGGGCGCCAATGCTGCGGCATTGGGTTACGTCGAGCGGCTATGCGAAGCCGACGCCGGCTGGACCGAGAGCCTTATCTACCTGTGGGGCAAGCAGGGTGTTGGCCGTTCCCACCTGCTGCAGGCCGCCACCCATCGCTTCCAGCAACGTGGCGAGCCCGCTGTC > NC_002947/1864606‑1864900 | gTATAGACTTTGCAGATTGTTCACCAAAGGCCCCCAGCGGTCCCGTCGACCGCCCGCGAGCATGAAACCACCGATCCAGTTGCCCCTGGGTGTGCGCCTGCGCGATGACGCCACCTTCATCAACTACTATCCGGGCGCCAATGCTGCgg > 8:276066/1‑149 (MQ=255) aGACTTTGCAGATTGTTCACCAAAGGCCCCCAGCGGTCCCGTCGACCGCCCGCGAGCATGAAACCACCGATCCAGTTGCCCCTGGGTGTGCGCCTGCGCGATGACGCCACCTTCATCAACTACTATCCGGGCGCCAATGCTGCGGCAt < 1:274804/148‑1 (MQ=255) gACTTTGCAGATTGTTCACCAAAGGCCCCCAGCGGTCCCGTCGACCGCCCGCGAGCATGAAACCACCGATCCAGTTGCCCCTGGGTGTGCGCCTGCGCGATGACGCCACCTTCATCAACTACTATCCGGGCGCCAATGCTGCGGCAtt < 6:128664/148‑1 (MQ=255) gACTTTGCAGATTGTTCACCAAAGGCCCCCAGCGGTCCCGTCGACCGCCCGCGAGCATGAAACCACCGATCCAGTTGCCCCTGGGTGTGCGCCTGCGCGATGACGCCACCTTCATCAACTACAATCCGGGCGCCAATGCTGCGGCAtt < 4:47809/148‑1 (MQ=255) aCTTTGCAGATTGTTCACCAAAGGCCCCCAGCGGTCCCGTCGCCCGCCCGCGAGCATGAAACCACCGATCCAGTTGCCCCTGGGTGTGCGCCTGCGCGATGACGCCACCTTCATCAACTACTATCCGGGCGCCAATGCTGCGGCATTgg < 7:269530/149‑1 (MQ=255) cTTTGCAGATTGTTCACCAAAGGCCCCCAGCGGTCCCGTCGACCGCCCGCGAGCATGAAACCACCGATCCAGTTGCCCCTGGGTGTGCGCCTGCGCGATGACGCCACCTTCATCAACTACTATCCGGGCGCCAATGCCGCAGCATTggc < 6:55624/149‑2 (MQ=255) tGCAGATTGTTCACCAAAGGCCCCCAGCGGTCCCGTCGACCGCCCGCGAGCATGAAACCACCGATCCAGTTGCCCCTGGGTGTGCGCCTGCGCGATGACGCCACCTTCATCAACTACTATCCGGGCGCCAATGCTGCGGCATTGGGtt < 7:276066/148‑1 (MQ=255) gCAGATTGTTCACCAAAGGCCCCCAGCGGTCCCGTCGACCGCCCGCGAGCATGAAACCACCGATCCAGTTGCCCCTGGGTGTGCGCCTGCGCGATGACGCCACCTTCATCAACTACTATCCGGGCGCCAATGCCGCAGCATTggcgcc < 2:181023/148‑5 (MQ=255) aGATTGTTCACCAAAGGCCCCCAGCGGTCCCGTCGACCGCCCGCGAGCATGAAACCACCGATCCAGTTGCCCCTGGGTGTGCGCCTGCGCGATGACGCCACCTTCATCAACTACTATCCGGGCGCCAATGCTGCGGCATTGGGATACGt > 8:94877/1‑149 (MQ=255) gATTGTTCACCAAAGGCCCCCAGCGGTCCCGTCGACCGCCCGCGAGCATGAAACCACCGATCCAGTTGCCCCTGGGTGTGCGCCTGCGCGATGACGCCACCTTCATCAACTACTATCCGGGCGCCAATGCTGCGGCATTGGGTTACGTc > 8:70869/1‑149 (MQ=255) aTTGTTCACCAAAGGCCCCCAGCGGTCCCGTCGACCGCCCGCGAGCATGAAACCACCGATCCAGTTGCCCCGGGGTGTGCGCCTGCGCGATGACGCCACCTTCATCAACTACTATCCGGGCGCCAATGCTGCGGCATTGGGTTACGTc > 7:145514/1‑148 (MQ=255) aCCAAAGGCCCCCAGCGGTCCCGTCGACCGCCCGCGAGCATGAAACCACCGATCCAGTTGCCCCTGGGTGTGCGCCTGCGCGATGACGCCACCTTCATCAACTACTATCCGGGCGCCAATGCTGCGGCATTGGGTTACGTCGAGCGGc > 6:183895/1‑148 (MQ=255) aCCAAAGGCCCCCAGCGGTCCCGTCGACCGCCCGCGAGCATGAAACCACCGATCCAGTTGCCCCTGGGTGTGCGCCTGCGCGATGACGCCACCTTCATCAACTACTATCCGGGCGCCAATGCTGCGGCATTGGGTTACGTCGAGCGGCt > 5:120862/1‑149 (MQ=255) cAAAGGCCCCCAGCGGTCCCGTCGACCGCCCGCGAGCATGAAACCACCGATCCAGTTGCCCCTGGGTGTGCGCCTGCGCGATGACGCCACCTTCATCAACTACTATCCGGGCGCCAATGCTGCGGCATTGGGtt > 4:177483/1‑134 (MQ=255) cAAAGGCCCCCAGCGGTCCCGTCGACCGCCCGCGAGCATGAAACCACCGATCCAGTTGCCCCTGGGTGTGCGCCTGCGCGATGACGCCACCTTCATCAACTACTATCCGGGCGCCAATGCTGCGGCATTGGGtt < 3:177483/134‑1 (MQ=255) cAAAGGCCCCCAGCGGTCCCGTCGACCGCCCGCGAGCATGAAACCACCGATCCAGTTGCCCCGGGGTGTGCGCCTGCGCGATGACGCCACCTTCATCAACTACTATCCGGGCGCCAATGCTGCGGCATTGGGTTACGTCGAGCGGCTAt < 8:145514/149‑1 (MQ=255) ccccAGCGGTCCCGTCGACCGCCCGCGAGCATGAAACCACCGATCCAGTTGCCCCTGGGTGTGCGCCTGCGCGATGACGCCACCTTCATCAACTACTATCCGGGCGCCAATGCTGCGGCATTGGGTTACGTCGAGCGGCTATGCGAAGc > 7:136970/1‑149 (MQ=255) ccAGCGGTCCCGTCGACCGCCCGCGAGCATGCAACCACCGATCCAGTTGCCCCTGGGTGTGCGCCTGCGCGATGACGCAACCTTCATCAACTACTATCCGGGCGCCAATGCTGCGGCATTGGGTTACGTCGAGCGGCTATGCGAAGCCg > 7:200167/1‑149 (MQ=255) ccAGCGGTCCCGTCGACCGCCCGCGAGCATGAAACCACCGATCCAGTTGCCCCTGGGTGTGCGCCTGCGCGATGACGCCACCTTCATCAACTACTATCCGGGCGCCAATGCTGCGGCATTGGGTTACGTCGAGCGGCTATGCGAAGCCg > 7:251679/1‑149 (MQ=255) aGCGGTCCCGTCGACCGCCCGCGAGCATGAAACCACCGATCCAGTTGCCCCTGGGTGTGCGCCTGCGCGATGACGCCACCTTCATCAACTACTATCCGGGCGCCAATGCTGCGGCATTGGGTTACGTCGAGCGGCTATGCGAAGCCGAc < 8:50373/149‑1 (MQ=255) aGCGGTCCCGTCGACCGCCCGCGAGCATGAAACCACCGATCCAGTTGCCCCTGGGTGTGCGCCTGCGCGATGACGCCACCTTCATCAACTACTATCCGGGCGCCAAAGCTGCGGCATTGGGTTACGTCGAGCGGCTATGCGAAGCCGAc > 4:281319/1‑149 (MQ=255) gCGGTCCCGTCGACCGCCCGCGAGCATGAAACCACCGATCCAGTTGCCCCTGGGTGTGCGCCTGCGCGATGACGCCACCTTCATCAACTACTATCCGGGCGCCAATGCTGCGGCATTGGGATACGTCGAGCGGCTATGCGAAGCCGACg < 7:94877/149‑1 (MQ=255) ccGTCGACCGCCCGCGAGCATGAAACCACCGATCCAGTTGCCCCTGGGTGTGCGCCTGCGCGATGACGCCACCTTCATCAACTACTATCCGGGCGCCAATGCTGCGGCATTGGGTTACGTCGAGCGGCTATGCGAAGCCGACGCCGGCt > 3:187033/1‑149 (MQ=255) cGACCGCCCGCGAGCATGAAACCACCGATCCAGTTGCCCCTGGGTGTGCGCCTGCGCGATGACGCCACCTTCATCAACTACTATCCGGGCGCCAATGCTGCGGCATTGGGTTACGTCGAGCGGCTATGCGAAGCCGACGCCGGCTGGAc < 8:251679/149‑1 (MQ=255) gcccgcGAGCATGAAACCACCGATCCAGTTGCCCCTGGGTGTGCGCCTGCGCGATGACGCCACCTTCATCAACTACTATCCGGGCGCCAATGCTGCGGCATTGGGTTACGTCGAGCGGCTATGCGAAGCCGACGCCGGCTGGACCgaga < 7:281100/149‑1 (MQ=255) gcccgcGAGCATGAAACCACCGATCCAGTTGCCCCTGGGTGTGCGCCTGCGCGATGACGCCACCTTCATCAACTACTATCCGGGCGCCAATGCTGCGGCATTGGGTTACGTCGAGCGGCTATGCGAAGCCGACGCCGGCTGGACCgaga < 8:136970/149‑1 (MQ=255) gcccgcGAGCATGAAACCACCGATCCAGTTGCCCCTGGGTGTGCGCCTGCGCGATGACGCCACCTTCATCAACTACTATCCGGGCGCCAATGCTGCGGCATTGGGTTACGTCGAGCGGCTATGCGAAGCCGACGCCGGCTGGACCgaga < 4:15126/149‑1 (MQ=255) gcccgcGAGCATGAAACCACCGATCCAGTTGCCCCTGGGTGTGCGCCTGCGCGATGACGCCACCTTCATCAACTACTATCCGGGCGCCAATGCTGCGGCATTGGGTTACGTCGAGCGGCTATGCGAAGCCGACGCCGGCTGGACCga > 8:281100/1‑147 (MQ=255) cgcgAGCATGAAACCACCGATCCAGTTGCCCCTGGGTGTGCGCCTGCGCGATGACGCCACCTTCATCAACTACTATCCGGTCGCCAATGCTGCGGCATTGGGTTACGTCGAGCGGCTATGCGAAGCCGACGCCGGCTGGACCGAGAGcc < 3:281319/149‑1 (MQ=255) gcgAGCATGAAACCACCGATCCAGTTGCCCCTGGGTGTGCGCCTGCGCGATGACGCCACCTTCATCAACTACTATCCGGGCGCCAATGCTGCGGCATTGGGTTACGTCGAGCGGCTATGCGAAGCCGACGCCGGCTGGACCGAGAGCCt > 7:216394/1‑149 (MQ=255) cgAGCATGAAACCACCGATCCAGTTGCCCCTGGGTGTGCGCCTGCGCGATGACGCCACCTTCATCAACTACTATCCGGGCGCCAATGCTGCGGCATTGGGTTACGTc < 3:261635/107‑1 (MQ=255) cgAGCATGAAACCACCGATCCAGTTGCCCCTGGGTGTGCGCCTGCGCGATGACGCCACCTTCATCAACTACTATCCGGGCGCCAATGCTGCGGCATTGGGTTACGTc > 4:261635/1‑107 (MQ=255) ccaccGATCCAGTTGCCCCTGGGTGTGCGCCTGCGCGATGACGCCACCTTCATCAACTACTATCCGGGCGCCAATGCTGCGGCATTGGGTTACGTCGAGCGGCTATGCGAAGCCGACGCCGGCTGGACCGAGAGCCTTATCTACCtgtg < 7:70869/149‑1 (MQ=255) caccGATCCAGTTGCCCCTGGGTGTGCGCCTGCGCGATGACGCCACCTTCATCAACTACTATCCGGGCGCCAATGCTGCGGCATTGGGTTACGTCGAGCGGCTATGCGAAGCCGACGCCGGCTGGACCGAGAGCCTTATCTACCTGTgg < 5:183895/149‑1 (MQ=255) accGATCCAGTTGCCCCTGGGTGTGCGCCTGCGCGATGACGCCACCTTCATCAACTACTATCCGGGCGCCAATGCTGCGGCATTGGGTTACGTCGAGCGGCTATGCGAAGCCGACGCCGGCTGGACCGAGAGCCTTATCTACCTGTggg > 4:277514/1‑149 (MQ=255) gTTGCGCCTGGGTGGGCGCCGGCGCGATGACGCCACCTGGATCCACTACTATCCGGGCGCCAATGCTGGGGCTTTGGGTTACGGCGTGCGGCCATGCGAAGCCGACGCCGGCTGGACCGAGAGCCTTATCTACCTGGCGGGCAAGCAgg < 6:296448/149‑1 (MQ=255) gTTGCCCCTGGGTGTGCGCCTGCGCGATGACGCCACCTTCATCAACTACTATCCGGGCGCCAATGCTGCGGCATTGGGTTACGTCGAGCGGCTATGCGAAGCCGACGCCGGCTGGACCGAGAGCCTTATCTACCTGTGGGGCAAGCAgg < 1:265048/149‑1 (MQ=255) gTTGCCCCTGGGTGTGCGCCTGCGCGATGACGCCACCTTCATCAACTACTATCCGGGCGCCAATGCTGCGGCATTGGGTTACGTCGAGCGGCTATGCGAAGCCGACGCCGGCTGGACCGAGAGCCTTATCTACCTGTGGGGCAAGCAgg < 3:277514/149‑1 (MQ=255) ttGGCCCTGGGGGAGCGTCGTCGCTATTACGCCACCTTCATCAACTACTATCCGGGCGCCAATGCTGCTGCATTGGGTTACGTCGAGCGGCTATGCGAAGCCGACGCCGGCTGGACCTAGAGCCTTATCTACCTGTGGGGCAAGCAgg < 8:200167/148‑1 (MQ=255) tgCGCCTGCGCGATGACGCCACCTTCATCAACTACTATCCGGGCGCCAATGCTGCGGCATTGGGTTACGTCGAGCGGCTATGCGAAGCCGACGCCGGCTGGACCGAGAGCCTTATCTACCTGTGGGGCAAGCAGGGTGTTGGCCGTTc < 8:216394/148‑1 (MQ=255) cACCTTCATCAACTACTATCCGGGCGCCAATGCTGCGGCATTGGGTTACGTCGAGCGGCTATGCGAAGCCGACGCCGGCTGGACCGAGAGCCTTATCTACCTGTGGGGCAAGCAGGGTGTTGGCCGTTCCCAc > 3:305959/1‑133 (MQ=255) cACCTTCATCAACTACTATCCGGGCGCCAATGCTGCGGCATTGGGTTACGTCGAGCGGCTATGCGAAGCCGACGCCGGCTGGACCGAGAGCCTTATCTACCTGTGGGGCAAGCAGGGTGTTGGCCGTTCCCAc < 4:305959/133‑1 (MQ=255) caACTACTATCCGGGCGCCAATGCTGCGGCATTGGGTTACGTCGAGCGGCTATGCGAAGCCGACGCCGGCTGGACCGAGAGCCTTATCTACCTGTGGGGCAAGCAGGGTGTTGGCCGTTCCCACCTGCTGCAGGCCGCCACCCATCGCt > 4:220357/1‑149 (MQ=255) ctaTCCGGGCGCCAATGCTGCGGCATTGGGTTACGTCGAGCGGCTATGCGAAGCCGACGCCGGCTGGACCGAGAGCCTTATCTACCTGTGGGGCAAGCAGGGTGTTGGCCGTTCCCACCTGCTGCAGGCCGCCACCCATCGCTTCCAg < 4:187033/148‑1 (MQ=255) taTCCGGGCGCCAATGCTGCGGCATTGGGTTACGTCGAGCGGCTATGCGAAGCCGACGCCGGCTGGACCGAGAGCCTTATCTACCTGTGGGGCAAGCAGGGTGTTGGCCGTTCCCACCTGCTGCAGGCCGCCACCCATCGCTTCCAGc > 4:304985/1‑148 (MQ=255) tCCGGGCGCCAATGCTGCGGCATTGGGTTACGTCGAGCGGCTATGCGAAGCCGACGCCGGCTGGACCGAGAGCCTTATCTACCTGTGGGGCAAGCAGGGTGTTGGCCGTTCCCACCTGCTGCAGGCCGCCACCCATCGCTTCCAGCAAc > 1:87895/1‑149 (MQ=255) ggCGCCAATGCTGCGGCATTGGGTTACGTCGAGCGGCTATGCGAAGCCGACGCCGGCTGGACCGAGAGCCTTATCTACCTGTGGGGCAAGCAGGGTGTTGGCCGTTCCCACCTGCTGCAGGCCGCCACCCATCGCTTCCAGCAACGTgg < 6:120862/149‑1 (MQ=255) cccAATGCCGCAGCATTGGGTTACGTCGAGCGGCTATGCGAAGCCGACGCCGGCTGGACCGAGAGCCTTATCTACCTGTGGGGCAAGCAGGGTGTTGGCCGTTCCCACCTGCTGCAGGCCGCCACCCATCGCTTCCAGCAACGTGGc > 5:94129/2‑147 (MQ=255) ccAATGCCGCAGCATTGGGTTACGTCGAGCGGCTATGCGAAGCCGACGCCGGCTGGACCGAGAGCCTTATCTACCTGTGGGGCAAGCAGGGTGTTGGCCGTTCCCACCTGCTGCAGGCCGCCACCCATCGCTTCCAGCAACGTGGCGAg > 7:219842/1‑149 (MQ=255) tgcGGCATTGGGTTACGTCGAGCGGCTATGCGAAGCCGACGCCGGCTGGACCGAGAGCCTTATCTACCTGTGGGGCAAGCAGGGTGTTGGCCGTTCCCACCTGCTGCAGGCCGCCACCCATCGCTTCCAGCAACGTGGc > 6:60267/1‑139 (MQ=255) tgcGGCATTGGGTTACGTCGAGCGGCTATGCGAAGCCGACGCCGGCTGGACCGAGAGCCTTATCTACCTGTGGGGCAAGCAGGGTGTTGGCCGTTCCCACCTGCTGCAGGCCGCCACCCATCGCTTCCAGCAACGTGGc < 5:60267/139‑1 (MQ=255) cGGCATTGGGTTACGTCGAGCGGCTATGCGAAGCCGACGCCGGCTGGACCGAGAGCCTTATCTACCTGTGGGGCAAGCAGGGTGTTGGCCGTTCCGACCTGCTGCAGGCCGCCACCCATCGCTTCCAGCAACGTGGCGAGCCCGCTGTc > 1:259450/1‑149 (MQ=255) | GTATAGACTTTGCAGATTGTTCACCAAAGGCCCCCAGCGGTCCCGTCGACCGCCCGCGAGCATGAAACCACCGATCCAGTTGCCCCTGGGTGTGCGCCTGCGCGATGACGCCACCTTCATCAACTACTATCCGGGCGCCAATGCTGCGGCATTGGGTTACGTCGAGCGGCTATGCGAAGCCGACGCCGGCTGGACCGAGAGCCTTATCTACCTGTGGGGCAAGCAGGGTGTTGGCCGTTCCCACCTGCTGCAGGCCGCCACCCATCGCTTCCAGCAACGTGGCGAGCCCGCTGTC > NC_002947/1864606‑1864900 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |