Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,920,303 | T→G | 12.5% | I52L (ATC→CTC) | prc ← | tail‑specific protease Prc |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,920,303 | 0 | T | G | 12.5% | 105.7 / 6.3 | 39 | I52L (ATC→CTC) | prc | tail‑specific protease Prc |
Reads supporting (aligned to +/- strand): ref base T (19/15); new base G (2/3); total (21/18) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.47e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01 |
TGTCGGCAGCGGTGAAGTAGCTGCGCGCCGGGTCCAGCAGCTTGATGTAGCTGTCGTAGATAATGACCGAACGGGCATCGTCCAGGGGCGGCTTGCTGTAGTGGTGGCGCTTGAGCAATTCCACCACGTTGAGGCTGGCGACGATCTCGTCGCGGTCGGGCTGCAGGCTGTCCCACTTGTTGGCGGCCGCCGCATTGCCGCCGAGCGTGAGGCTGCCCAGGCCGATCATCACAGCCAGTGCGGTGCTTGGAAGGAAATGCTTCATGCTGATTCGACGTGGAGGC > NC_002947/1920159‑1920442 | tGTCGGCAGCGGTGAAGTAGCTGCGCGCCGGGTCCAGCAGCTTGATGTAGCTGTCGTAGATAATGACCGAACGGGCATCCTCCAGGGGCGGCTTGCTGTAGTGGTGGCGCTTGAGTAATTCCACCACGTTGAGGCTGGCGACGATCtcg > 4:306131/1‑149 (MQ=255) ggCAGCGGTGAAGTAGCTGCGCGCCGGGTCCAGCAGCTTGATGTAGCTGTCGTAGATAATGACCGAACGGGCATCGTCCAGGGGCGGCTTGCTGTAGTGGTGGCGCTTGAGCAATTCCACCACGTTGAGGCTGGCGACGATCTCGTcgc > 1:304835/1‑149 (MQ=255) cAGCGGTGAAGTAGCTGCGCGCCGGGTCCAGCAGCTTGATGTAGCTGTCGTAGATAATGACCGAACGGGCATCGTCCAGGGGCGGCTTGCTGTAGTGGTGGCGCGTGAGCAATTCCACCACGTTGAGGCTGGCGACGAGATCGTcgcca < 8:90980/149‑3 (MQ=255) gTGAAGTAGCTGCGCGCCGGGTCCAGCAGCTTGATGTAGCTGTCGTAGATAATGACCGAACGGGCATCGTCCAGGGGCGGCTTGCTGTAGTGGTGGCGCTTGAGCAATTCCACCACGTTGAGGCTGGCGACGATCTCGTCGCGGTCggg < 4:182553/149‑1 (MQ=255) gAAGTAGCTGCGCGCCGGGTCCAGCAGCTTGATGTAGCTGTCGTAGATAATGACCGAACGGGCATCGACCAGGGGCGGCTTGCTGTAGTGGTGGCGCTTGAGCAATTCCACCACGTTGAGGCTGGCGACGATCTCGTCGCGGTCGGGCt > 8:58379/1‑149 (MQ=255) aaGTAGCTGCGCGCCGGGTCCAGCAGCTTGATGTAGCTGTCGTAGATAATGACCGAACGGGCATCGACCAGGGGCGGCTTGCTGTAGTGGTGGCGCTTGAGCAATTCCACCACGTTGAGGCTGGCGACGATCTCGTCGCGGTCGGGCTg < 7:58379/149‑1 (MQ=255) gTAGCTGCGCGCCGGGTCCAGCAGCTTGATGTAGCTGTCGTAGATAATGACCGAACGGGCATCGTCCAGGGGCGGCTTGCTGTAGTGGTGGCGCTTGAGTAATTCCACCACGTTGAGGCTGGCGACGATCTCGTCGCGGTCGGGCTGCa < 3:306131/149‑1 (MQ=255) cTGCGCGCCGGGTCCAGCAGCTTGATGTAGCTGTCGTAGATAATGACCGAACGGGCATCGTCCAGGGGCGGCTTGCTGTAGTGGTGGCGCTTGAGCAATTCCACCACGTTGAGGCTGGCGACGATCTCGTCGCGGTCGGGCTGCAGGCt < 5:183627/149‑1 (MQ=255) gTCCAGCAGCTTGATGTAGCTGTCGTAGATAATGACCGAACGGGCATCGTCCAGGGGCGGCTTGCTGTAGTGGTGGCGCTTGAGCAATTCCACCACGTTGAGGCTGGCGACGATCTCGTCGCGGTCGGGCTGCAGGCTGTCTCACttgt > 5:198498/1‑149 (MQ=255) cagcagCTTGATGTAGCTGTCGTAGATAATGACCGAACGGGCATCGTCCAGGGGCGGCTTGCTGTAGTGGTGGCGCTTGAGCAATTCCACCACGTTGAGGCTGGCGACGATCTCGTCGCGGTCGGGCTGCAGGCTGTCCCACTTGTTgg > 6:89792/1‑149 (MQ=255) agcagcTTGATGTAGCTGTCGTAGATAATGACCGAACGGGCATCGTCCAGGGGCGGCTTGCTGTAGTGGTGGCGCTTGAGCAATTCCACCACGTTGAGGCTGGCGACGATCTCGTCGCGGTCGGGCTGCAGGCTGTCCCACTTGTTggc < 5:89792/149‑1 (MQ=255) gcTTGATGTAGCTGTCGTAGATAATGACCGAACGGGCATCGTCCAGGGGCGGCTTGCTGTAGTGGTGGCGCTTGAGCAATTCCACCACGTTGAGGCTGGCGACGATCTCGTCGCGGTCGGGCTGCAGGCTGTCTCACTTGTTGGCGgcc < 6:198498/149‑1 (MQ=255) aGCTGTCGTAGATAATGACCGAACGGGCATCGTCCAGGGGGGGCTTGCTGTAGTGGTGGCGCTTGAGCAATTCCACCACGTTGAGGCTGGCGACGATCTCGTCGCGGTCGGGCTGCAGGCTGTCCCACTTGTTGGCGGCCGCCGCAtt < 2:304835/148‑1 (MQ=255) tCGTAGATAATGACCGAACGGGCATCGTCCAGGGGCGGCTTGCTGTAGTGGTGGCGCTTGAGCAATTCCACCACGTTGAGGCTGGCGACGATCTCGTCGCGGTCGGGCTGCAGGCTGTCCCACTTGTTGGCGGCCGCCGCATTgccgc < 6:286758/148‑1 (MQ=255) cGAACGGGCATCGTCCAGGGGCGGCTTGCTGTAGTGGTGGCGCTTGAGCAATTCCACCACGTTGAGGCTGGCGACGATCTCGTCGCGGTCGGGCTGCAGGCTGTCCCACTTGTTGGCGGCCGCCGCATTGCCGCCGAGCGTGAGGCTGc > 2:156413/1‑149 (MQ=255) gAACGGGCATCGTCCAGGGGCGGCTTGCTGTAGTGGTGGCGCTTGAGCAATTCCACCACGTTGAGGCTGGCGACGATCTCGTCGCGGTCGGGCTGCAGGCTGTCCCACTTGTTGGCGGCCGCCGCATTgcc > 4:249192/1‑131 (MQ=255) gAACGGGCATCGTCCAGGGGCGGCTTGCTGTAGTGGTGGCGCTTGAGCAATTCCACCACGTTGAGGCTGGCGACGATCTCGTCGCGGTCGGGCTGCAGGCTGTCCCACTTGTTGGCGGCCGCCGCATTgcc < 3:249192/131‑1 (MQ=255) aCGGGCATCGTCCAGGGGCGGCTTGCTGTAGTGGTGGCGCTTGAGCAATTCCACCACGTTGAGGCTGGCGACGATCTCGTCGCGGTCGGGCTGCAGGCTGTCCCACTTGTTGGCGGCCGCCGCATTGCCGCCGAGCGTGAGGCTGCCCa < 1:156413/149‑1 (MQ=255) cATCGTCCAGGGGCGGCTTGCTGTAGTGGTGGCGCTTGAGCAATTCCACCACGTTGAGGCTGGCGACGATCTCGTCGCGGTCGGGCTGCAGGCTGTCCCACTTGTTGGCGGCCGCCGCATTGCCGCCGAGCGTGAGGCTGCCCAGGcc > 8:223918/1‑148 (MQ=255) aTCGTCCAGGGGCGGGTTGCTGTAGTGGTGGGGCTTGAGCAATTCCACCACGTTGAGGCTGGCGACGATCTCGTCGCGGTCGGGCTGCAGGCTGTCCCACTTGTTGGCGGCCGCCGCATTGCCGCCGAGCGTGAGGCTGCCCAGGCCGa < 8:87385/149‑1 (MQ=255) aTCGTCCAGGGGCGGCTTGCTGTAGTGGTGGCGCTTGAGCAATTCCACCACGTTGAGGCTGGCGACGATCTCGTCGCGGTCGGGCTGCAGGCTGTCCCACTTGTTGGCGGCCGCCGCATTGCCGCCGAGCGTGAGGCTGCCCAGGCCGa > 2:217797/1‑149 (MQ=255) aGGGGCGGCTTGCTGTAGTGGTGGCGCTTGAGCAATTCCACCACGTTGAGGCTGGCGACGATCTCGTCGCGGTCGGGCTGCAGGCTGTCCCACTTGTTGGCGGCCGCCGCATTGCCGCCGAGCGTGAGGCTGCCCAGGCCGAtcatca > 2:156093/1‑148 (MQ=255) tGTAGTGGTGGCGCTTGAGCAATTCCACCACGTTGAGGCTGGCGACGATCTCGTCGCGGTCGGGCTGCAGGCTGTCCCACTTGTTGGCGGCCGCCGCATTGCCGCCGAGCGTGGGGCTGCCCAGGCCGATCATCACAGCCAGTGCGGTg > 8:96221/1‑149 (MQ=255) tGTAGTGGTGGCGCTTGAGCAATTCCACCACGTTGAGGCTGGCGACGATCTCGTCGCGGTCGGGCTGCAGGCTGTCCCACTTGTTGGCGGCCGCCGCATTGCCGCCGAGCGTGAGGCTGCCCAGGCCGCTCATCCCAGCCAGTGCGGTg > 6:222835/1‑149 (MQ=255) gTAGTGGTGGCGCTTGAGCAATTCCACCACGTTGAGGCTGGCGACGATCTCGTCGCGGTCGGGCTGCAGGCTGTCCCACTTGTTGGCGGCCGCCGCATTGCCGCCGAGCGTGAGGCTGCCCAGGCCGATCATCACAGCCAGTGCGGTGc > 5:66395/1‑149 (MQ=255) gtggCGCTTGAGCAATTCCACCACGTTGAGGCTGGCGACGATCTCGTCGCGGTCGGGCTGCAGGCTGTCCCACTTGTTGGCGGCCGCCGCATTGCCGCCGAGCGTGAGGCTGCCCAGGCCGATCATCACAGCCAGTGCGGTGCTTggaa < 1:217797/149‑1 (MQ=255) gCAATTCCACCACGTTGAGGCTGGCGACGATCTCGTCGCGGTCGGGCTGCAGGCTGTCCCACTTGTTGGCGGCCGCCGCATTGCCGCCGAGCGTGAGGCTGCCCAGGCCGATCATCACAGCCAGTGCGGTGCTTGGAAGGAAATGCtt > 1:216260/1‑148 (MQ=255) aaTTCCACCACGTTGAGGCTGGCGACGATCTCGTCGCGGTCGGGCTGCAGGCTGTCCCACTTGTTGGCGGCCGCCGCATTGCCGCCGAGCGTGAGGCTGCCCAGGCCGATCATCACAGCCAGTGCGGTGCTTGGAAGGAAATGCTTCAt > 8:198765/1‑149 (MQ=255) ttCCACCACGTTGAGGCTGGCGACGATCTCGTCGCGGTCGGGCTGCAGGCTGTCCCACTTGTTGGCGGCCGCCGCATTGCCGCCGAGCGTGAGGCTGCCCAGGCCGATCATCACAGCCAGTGCGGTGCTTGGAAGGAAATGCTTCATGc > 7:133357/1‑149 (MQ=255) caccacGTTGAGGCTGGCGACGATCTCGTCGCGGTCGGGCTGCAGGCTGTCCCACTTGTTGGCGGCCGCCGCATTGCCGCCGAGCGTGAGGCTGCCCAGGCCGATCATCACAGCCAGTGCGGTGCTTGGAAGGAAATGCTTCATGCTGa > 8:59948/1‑149 (MQ=255) caccacGTTGAGGCTGGCGACGATCTCGTCGCGGTCGGGCTGCAGGCTGTCCCACTTGTTGGCGGCCGCCGCATTGCCGCCGAGCGTGAGGCTGCCCAGGCCGATCATCACAGCCAGTGCGGTGCTTGGAAGGAAATGCTTCATGCTGa > 1:80924/1‑149 (MQ=255) accacGTTGAGGCTGGCGACGATCTCGTCGCGGTCGGGCTGCAGGCTGTCCCACTTGTTGGCGGCCGCCGCATTGCCGCCGAGCGTGAGGCTGCCCAGGCCGATCATCACAGCCAGTGCGGTGCTTGGAAGGAAATGCTTCATGCTGAt > 2:257245/1‑149 (MQ=255) gAGGCTGGCGACGATCTCGTCGCGGTCGGGCTGCAGGCTGTCCCACTTGTTGGCGGCCGCCGCATTGCCGCCGAGCGTGAGGCTGCCCAGGCCGATCATCACAGCCAGTGCGGTGCTTGGAAGGAAATGCTTCATGCTGATTCGACGt < 2:216260/148‑1 (MQ=255) gcgggCGACGTGCTCGTGGCGGTCGGGCTGCAGGCTGTCCCACTTGTTGGCGGCCGCCGCATGGCCGCCGAGCGTGAGGCTGCCCAGTCCGATCATCACAGCCAGTGCGGTGCTTGGAAGGAAATGCTTCATGCTGATTCGACGTGGAg < 7:169715/146‑1 (MQ=255) gCTGGCGACGATCTCGTCGCGGTCGGGCTGCAGGCTGTCCCACTTGTTGGCGGCCGCCGCATTGCCGCCGAGCGTGAGGCTGCCCAGGCCGATCATCACAGCCAGTGCGGTGCTTGGAAGGAAATGTTTCATGCTGATTCGACGTGGAg < 7:198765/149‑1 (MQ=255) accgCGACGAGATCGTCGCGGTCGGGCTGCAGGCTGTCCCACTTGTTGGCGGCCGCCGCATTGCCGCCGAGCGTGAGGCTGCCCAGGCCGATCATCACAGCCAGTGCGGTGCTTggaa < 6:289061/115‑1 (MQ=255) accgCGACGAGATCGTCGCGGTCGGGCTGCAGGCTGTCCCACTTGTTGGCGGCCGCCGCATTGCCGCCGAGCGTGAGGCTGCCCAGGCCGATCATCACAGCCAGTGCGGTGCTTggaa > 5:289061/4‑118 (MQ=255) accgCGACGAGATCGTCGCGGTCGGGCTGCAGGCTGTCCCACTTGTTGGCGGCCGCCGCATTGCCGCCGAGCGTGAGGCTGCCCAGGCCGATCATCACAGCCAGTGCGGTGCTTGGAAGGAAATGCTTCATGCTGATTCGACGTGGAgg > 6:280888/4‑149 (MQ=255) gCGACGATCTCGTCGCGGTCGGGCTGCAGGCTGTCCCACTTGTTGGCGGCCGCCGCATTGCCGCCGAGCGTGAGGCTGCCCAGGCCGATCATCACAGCCAGTGCGGTGCTTGGAAGGAAATGCTTCATGCTGATTCGACGTGGAGGc < 6:66395/147‑1 (MQ=255) | TGTCGGCAGCGGTGAAGTAGCTGCGCGCCGGGTCCAGCAGCTTGATGTAGCTGTCGTAGATAATGACCGAACGGGCATCGTCCAGGGGCGGCTTGCTGTAGTGGTGGCGCTTGAGCAATTCCACCACGTTGAGGCTGGCGACGATCTCGTCGCGGTCGGGCTGCAGGCTGTCCCACTTGTTGGCGGCCGCCGCATTGCCGCCGAGCGTGAGGCTGCCCAGGCCGATCATCACAGCCAGTGCGGTGCTTGGAAGGAAATGCTTCATGCTGATTCGACGTGGAGGC > NC_002947/1920159‑1920442 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |