Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,419,299 | G→A | 10.8% | A150A (GCG→GCA) ‡ | ctpH → | methyl‑accepting chemotaxis protein CtpH |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,419,299 | 0 | G | A | 10.8% | 124.5 / 4.2 | 46 | A150A (GCG→GCA) ‡ | ctpH | methyl‑accepting chemotaxis protein CtpH |
Reads supporting (aligned to +/- strand): ref base G (19/22); new base A (2/3); total (21/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CAGTTCCAGGCCCGAGAACAGCAAGTTCAACAACTGCTCGGGCAATTGATCGACAACAGCGATGCCAGGCTCAAGGCGTCGCTGCAGCAATTGCGCGACAGCCACCGCCAGTTGGGCCAGGCCTATGCACAAGGCCGCCAGGCGTTCCTGGCGGCAGGCGGCGACCCGGTAGCGGGCGACCGGGCGGTCAAAGGCGTGGACCGTGCCGCCAGTGAGCAAATGAGCGAACTGGTCGAGCAACTGCGCGCCGATGCTCGCCAGCGTGCAGCCAGCATCAATGCCAGTGCCGAGC > NC_002947/2419156‑2419447 | cagTTCCAGGCCCGAGAACAGCAAGTTCAACAACTGCTCGGGCAATTGATCGACAACAGCGATGCCAGGCTCAAGGCGTCGCTGCAGCAATTGCGCGACAGCCACCGCCAGTTGGGCCAGGCCTATGCACAAGGCCGCCAGGCGTTCCt < 7:84271/149‑1 (MQ=255) cagTTCCAGGCCCGAGAACAGCAAGTTCAACAACTGCTCGGGCAATTGATCGACAACAGCGATGCCAGGCTCAAGGCGTCGCTGCAGCAATTGCGCGACAGCCACCGCCAGTTGGGCCAGGCCTATGCACAAGGCCGCCAGGCGTTCCt > 6:299480/1‑149 (MQ=255) agTTCCAGGCCCGAGAACAGCAAGTTCAACAACTGCTCGGGCAATTGATCGACAACAGCGATGCCAGGCTCAAGGCGTCGCTGCAGCAATTGCGCGACAGCCACCGCCAGTTGGGCCAGGCCTATGCACAAGGCCGCCAGGCGTTCCTg < 4:298563/149‑1 (MQ=255) ttCCAGGCCCGAGAACAGCAAGTTCAACAACTGCTCGGGCAATTGATCGACAACAGCGATGCCAGGCTCAAGGCGTCGCTGCAGCAATTGCGCGACAGCCACCGCCAGTTGGGCCAGGCCTATGCACAAGGCCGCCAGGCGTTCCTggc < 3:28471/149‑1 (MQ=255) ttCCAGGCCCGAGAACAGCAAGTTCAACAACTGCTCGGGCAATTGATCGACAACAGCGATGCCAGGCTCAAGGCGTCGCTGCAGCAATTGCGCGACAGCCACCGCCAGTTGGGCCAGGCCTATGCACAAGGCCGCCAGGCGTTCCTggc > 3:95213/1‑149 (MQ=255) cAGGCCCGAGAACAGCAAGTTCAACAACTGCTCGGGCAATTGATCGACAACAGCGATGCCAGGCTCAAGGCGTCGCTGCAGCAATTGCGCGACAGCCACCGCCAGTTGGGCCAGGCCTATGCACAAGGCCGCCAGGAACGCCTggcgg < 1:283588/148‑1 (MQ=255) ggCCCGAGAACAGCAAGTTCAACAACTGCTCGGGCAATTGATCGACAACAGCGATGCCAGGCTCAAGGCGTCGCTGCAGCAATTGCGCGACAGCCACCGCCAGTTGGGCCAGGCCTATGCACAAGGCCGCCAGGCGTTCCTGGCGGCAg > 1:39542/1‑149 (MQ=255) gCCCGAGAACAGCAAGTTCAACAACTGCTCGGGCAATTGATCGACAACAGCGATGCCAGGCTCAAGGCGTCGCTGCAGCAATTGCGCGACAGCCACCGCCAGTTGGGCCAGGCCTATGCACAAGGCCGCCAGGCGTTCCTGGCGGCAgg > 1:307029/1‑149 (MQ=255) cccGAGAACAGCAAGTTCAACAACTGCTCGGGCAATTGATCGACAACAGCGATGCCAGGCTCAAGGCGTCGCTGCAGCAATTGCGCGACAGCCACCGCCAGTTGGGCCAGGCCTATGCACAAGGCCGCCAGGAACGCCTggcggccttg < 6:37268/149‑5 (MQ=255) ccGAGAACAGCAAGTTCAACAACTGCTCGGGCAATTGATCGACAACAGCGATGCCAGGCTCAAGGCGTCGCTGCAGCAATTGCGCGACAGCCACCGCCAGTTGAGCCAGGCCTATGCACAAGGCCGCCAGGCGTTCCTGGCGGCAggcg > 4:38631/1‑149 (MQ=255) cGAGAACAGCAAGTTCAACATCTGCTCGGGCAATTGATCGACAACAGCGATGCCAGGCTCAAGGCGTCGCTGCAGCAATTGCGCGACAGCCACCGCCAGTTGGGCCAGGCCTATGCACAAGGCCGCCAGGCGTTCCTGGCGGCAggcgg < 1:196103/149‑1 (MQ=255) cGAGAACAGCAAGTTCAACAACTGCTCGGGCAATTGATCGACAACAGCGATGCCAGGCTCAAGGCGTCGCTGCAGCAATTGCGCGACAGCCACCGCCAGTTGGGCCAGGCCTATGCACAAGGCCGCCAGGCg > 6:145426/1‑132 (MQ=255) cGAGAACAGCAAGTTCAACAACTGCTCGGGCAATTGATCGACAACAGCGATGCCAGGCTCAAGGCGTCGCTGCAGCAATTGCGCGACAGCCACCGCCAGTTGGGCCAGGCCTATGCACAAGGCCGCCAGGCg < 5:145426/132‑1 (MQ=255) aacaacTGCTCGGGCAATTGATCGACAACAGCGATGCCAGGCTCAAGGCGTCGCTGCAGCAATTGCGCGACAGCCACCGCCAGTTGGGCCAGGCCTATGCACAAGGCCGCCAGGAACGCCTggcggc < 1:24826/127‑1 (MQ=255) aacaacTGCTCGGGCAATTGATCGACAACAGCGATGCCAGGCTCAAGGCGTCGCTGCAGCAATTGCGCGACAGCCACCGCCAGTTGGGCCAGGCCTATGCACAAGGCCGCCAGGAACGCCTggcggc > 2:24826/1‑127 (MQ=255) acTGCTCGGGCAATTGATCGACAACAGCGATGCCAGGCTCAAGGCGTCGCTGCAGCAATTGCGCGACAGCCACCGCCAGTTGGGCCAGGCCTATGCACAAGGCCGCCAGGCGTTCCTGGCGGCAGGCGGCGACCCGGTAGCGGGCGAcc < 5:310324/149‑1 (MQ=255) gggCAATTGATCGACAACAGCGATGCCAGGCTCAAGGCGTCGCTGCAGCAATTGCGCGACAGCCACCGCCAGTTGGGCCAGGCCTATGCACAAGGCCGCCAGGCGTTCCTGGCGGCAGGCGGCGACCCGGTAGCGGGCGACCGGGCgg > 5:2468/1‑148 (MQ=255) aaTTGATCGACAACAGCGATGCCAGGCTCAAGGCGTCGCTGCAGCAATTGCGCGACAGCCACCGCCAGTTGGGCCAGGCCTATGCACAAGGCCGCCAGGCGTTCCTGGCGGCAGGCGGCGACCCGGTAGCGGGCGACCGGGCGGTCaaa < 5:299480/149‑1 (MQ=255) aaTTGATCGACAACAGCGATGCCAGGCTCAAGGCGTCGCTGCAGCAATTGCGCGACAGCCACCGCCAGTTGGGCCAGGCCTATGCACAAGGCCGCCAGGCGTTCCTGGCGGCAGGCGGCGACCCGGTAGCGGGCGACCGGGCGGTCa > 1:5222/1‑147 (MQ=255) tGATCGACAACAGCGATGCCAGGCTCAAGGCGTCGCTGCAGCAATTGCGCGACAGCCACCGCCAGTTGGGCCAGGCCTATGCACAAGGCCGCCAGGCGTTCCTGGCGGCAGGCGGCGACCCGGTAGCGGGCGACCGGGCGGTCAAAgg < 6:2468/148‑1 (MQ=255) aTCGACAACAGCGATGCCAGGCTCAAGGCGTCGCTGCAGCAATTGCGCGACAGCCACCGCCAGTTGGGCCAGGCCTATGCACAAGGCCGCCAGGCGTTCCTGGCGGCAGGCGGCGACCCGGTAGCGGGCGACCGGGCGGTCAAAGGCGt < 2:307029/149‑1 (MQ=255) gACAACAGCGATGCCAGGCTCAAGGCGTCGCTGCAGCAATTGCGCGACAGCCACCGCCAGTTGGGCCAGGCCTATGCACAAGGCCGCCAGGCGTTCCTGGCGGCAGGCGGCGACCCGGTAGCGGGCGACCGGGCGGTCAAAGGCGTGGa > 4:208031/1‑149 (MQ=255) ggcacaGCGATGCCAGGCGCACGGCGTCGCTGCAGCAATTGCGCGACAGCCACCGCCAGTTGGGCCAGGCCTATGCACAAGGCCGCCAGGCGTTCCTGGCGGCAGGCGGCGACCCGGTAGCGGGCGACCGGGCGGTCAAAGGCGTGGAc < 1:149463/146‑1 (MQ=255) tcaGCGATGCCAGGCTCAAGGCGTCGCTGCAGCAATTGCGCGACAGCCACCGCCAGTTGGGCCAGGCCTATGCACAAGGCCGCCAGGCGTTCCTGGCGGCAGGCGGCGACCCGGTAGCGGGCGACCGGGCGGTCAAAGGCGTGGACCGt < 4:31065/148‑1 (MQ=255) acaGCGATGCCAGGCTCAAGGCGTCGCTGCAGCAATTGCGCGACAGCCACCGCCAGTTGGGCCAGGCCTATGCACAAGGCCGCCAGGCGTTCCTGGCGGCAGGCGGCGACCCGGTAGCGGGCGACCGGGCGGTCAAAGGCGTGGACCGt > 2:299966/1‑149 (MQ=255) caGCGATGCCAGGCTCAAGGCGTCGCTGCAGCAATTGCGCGACAGCCACCGCCAGTTGGGCCAGGCCTATGCACAAGGCCGCCAGGCGTTCCTGGCGGCAGGCGGCGACCCGGTAGCGGGCGACCGGGCGGTCAAAGGCGTGGACCGTg < 4:147246/149‑1 (MQ=255) aGCGATGCCAGGCTCAAGGCGTCGCTGCAGCAATTGCGCGACAGCCACCGCCAGTTGGGCCAGGCCTATGCACAAGGCCGCCAGGCGTTCCTGGCGGCAGGCGGCGACCCGGTAGCGGGCGACCGGGCGGTCAAAGGCGTGGACCGTgc > 3:240825/1‑149 (MQ=255) aGGCTCAAGGCGTCGCTGCAGCAATTGCGCGACAGCCACCGCCAGTTGGGCCAGGCCTATGCACAAGGCCGCCAGGCGTTCCTGGCGGCAGGCGGCGACCCGGTAGCGGGCGACCAGGCGGTCAAAGGCGTGGACCGTGCCGCCAGTGa < 5:163436/149‑1 (MQ=255) cAAGGCGTCGCTGCAGCAATTGCGCGACAGCCACCGCCAGTTGGGCCAGGCCTATGCACAAGGCCGCCAGGCGTTCCTGGCGGCAGGCGGCGACCCGGTAGCGGGCGACCGGGCGGTCAAAGGCGTGGACCGTGCCGCCAGTGAGCaaa > 8:260688/1‑149 (MQ=255) aaGGCGTCGCTGCAGCAATTGCGCGACAGCCACCGCCAGTTGGGCCAGGCCTATGCACAAGGCCGCCAGGCGTTCCTGGCGGCAGGCGGCGACCCGGTAGCGGGCGACCGGGCGGTCAAAGGCGTGGACCGTGCCGCCAGTGAGCAAAt < 2:5222/149‑1 (MQ=255) cagcaATTGCGCGACAGCCACCGCCAGTTGGGCCAGGCCTATGCACAAGGCCGCCAGGCGTTCCTGGCGGCAGGCGGCGACCCGGTAGCGGGCGACCGGGCGGTCAAAGGCGTGGACCGt < 7:221259/120‑1 (MQ=255) cagcaATTGCGCGACAGCCACCGCCAGTTGGGCCAGGCCTATGCACAAGGCCGCCAGGCGTTCCTGGCGGCAGGCGGCGACCCGGTAGCGGGCGACCGGGCGGTCAAAGGCGTGGACCGt > 8:221259/1‑120 (MQ=255) agcaATTGCGCGACAGCCACCGCCAGTTGGGCCAGGCCTATGCACAAGGCCGCCAGGCGTTCCTGGCGGCAGGCGGCGACCCGGTAGCGGGCGACCGGGCGGTCAAAGGCGTGGACCGTGCCGCCAGTGAGCAAATGAGCGAACTGGTc < 4:95213/149‑1 (MQ=255) gcaATTGCGCGACAGCCACCGCCAGTTGGGCCAGGCCTATGCACAAGGCCGCCAGGCGTTCCTGGCGGCAGGCGGCGACCCGGTAGCGGGCg > 1:132067/1‑92 (MQ=255) gcaATTGCGCGACAGCCACCGCCAGTTGGGCCAGGCCTATGCACAAGGCCGCCAGGCGTTCCTGGCGGCAGGCGGCGACCCGGTAGCGGGCg < 2:132067/92‑1 (MQ=255) ccGCCAGTTGGGCCAGGCCTATGCACAAGGCCGCCAGGCGTTCCTGGCGGCAGGCGGCGACCCGGTAGCGGGCGACCGGGCGGTCAAAGGCGTGGACCGTGCCGCCa > 3:111147/1‑107 (MQ=255) ccGCCAGTTGGGCCAGGCCTATGCACAAGGCCGCCAGGCGTTCCTGGCGGCAGGCGGCGACCCGGTAGCGGGCGACCGGGCGGTCAAAGGCGTGGACCGTGCCGCCa < 4:111147/107‑1 (MQ=255) cTATGCACAAGGCCGCCAGGCGTTCCTGGCGGCAGGCGGCGACCCGGTAGCGGGCGACCGGGCGGTCAAAGGCGTGGACCGTGCCGCCAGTGAGCAAATGAGCGAACTGGTCGAGCAACTGCGCGCCGATGCTCGCCAGCGTGcagc > 2:275767/1‑147 (MQ=255) tATGCACAAGGCCGCCAGGCGTTCCTGGCGGCAGGCGGCGACCCGGTAGCGGGCGACCGGGCGGTCAAAGGCGTGGACCGTGCCGCCAGTGAGCAAATGAGCGAACTGGTCGAGCAACTGCGCGCCGATGCTCGCCAGCGTGcagccag > 1:176737/1‑149 (MQ=255) cgcctgccgccAGGAACGCCTGGCGGCCGGCGGCGACCCGGTAGCGGGCGACCGGGCGGTCAAAGGCGTGGACCGTGCCGCCAGTGAGCAAATGAGCGAACTGGTCGAGCAACTGCGCGCCGATGCTCGCCAGCGTGCAGCCAGCATc > 7:14962/6‑148 (MQ=255) acaAGGCCGCCAGGCGTTCCTGGCGGCAGGCGGCGACCCGGTAGCGGGCGACCGGGCGGTCAAAGGCGTGGACCGTGCCGCCAGTGAGCAAATGAGCGAACTGGTCGAGCAACTGCGCGCCGATGCTCGCCAGCGTGc < 5:55211/138‑1 (MQ=255) acaAGGCCGCCAGGCGTTCCTGGCGGCAGGCGGCGACCCGGTAGCGGGCGACCGGGCGGTCAAAGGCGTGGACCGTGCCGCCAGTGAGCAAATGAGCGAACTGGTCGAGCAACTGCGCGCCGATGCTCGCCAGCGTGc > 6:55211/1‑138 (MQ=255) acaAGGCCGCCAGGCGTTCCTGGCGGCAGGCGGCGACCCGGTAGCGGGCGACCGGGCGGTCAAAGGCGTGGACCGTGCCGCCAGTGAGCAAATGAGCGAACTGGTCGAGCAACTGCGCGCCGATGCTCGCCAGCGTGCAGCCAGCATc > 5:294199/1‑148 (MQ=255) ggCCGCCAGGCGTTCCTGGCGGCAGGCGGCGACCCGGTAGCGGGCGACCGGGCGGTCAAAGGCGTGGACCGTGCCGCCAGTGAGCAAATGAGCGAACTGGTCGAGCAACTGCGCGCCGATGCTCGCCAGCGTGCAGCCAGCATCAATGc < 4:240825/149‑1 (MQ=255) ggCCGCCAGGCGTTCCTGGCGGCAGGCGGCGACCCGGTAGCGGGCGACCGGGCGGTCAAAGGCGTGGACCGTGCCGCCAGTGAGCAAATGAGCGAACTGGTCGAGCAACTGCGCGCCGATGCTCGCCAGCGTGCAGCCAGCATCAATGc < 7:260688/149‑1 (MQ=255) cgccAGGCGTTCCTGGCGGCAGGCGGCGACCCGGTAGCGGGCGACCGGGCGGTCAAAGGCGTGGACCGTGCCGCCAGTGAGCAAATGAGCGAACTGGTCGAGCAACTGCGCGCCGATGCTCGCCAGCGTGcag > 4:190435/1‑133 (MQ=255) cgccAGGCGTTCCTGGCGGCAGGCGGCGACCCGGTAGCGGGCGACCGGGCGGTCAAAGGCGTGGACCGTGCCGCCAGTGAGCAAATGAGCGAACTGGTCGAGCAACTGCGCGCCGATGCTCGCCAGCGTGcag < 3:190435/133‑1 (MQ=255) cGTTCCTGGCGGCAGGCGGCGACCCGGTAGCGGGCGACCGGGCGGTCAAAGGCGTGGACCGTGCCGCCAGTGAGCAAATGAGCGAACTGGTCGAGCAACTGCGCGCCGATGCTCGCCAGCGTGCAGCCAGCATCAATGCCAGTGCCGAg < 3:208031/149‑1 (MQ=255) gTTCCTGGCGGCAGGCGGCGACCCGGTAGCGGGCGACCGGGCGGTCAAAGGCGTGGCCCGTGCCGCCAGTGAGCAAATGAGCGAACTGGTCGAGCAACTGCGCGCCGATGCTCGCCAGCGTGCAGCCAGCATCAATGCCAGTGCCGAgc > 5:6919/1‑149 (MQ=255) | CAGTTCCAGGCCCGAGAACAGCAAGTTCAACAACTGCTCGGGCAATTGATCGACAACAGCGATGCCAGGCTCAAGGCGTCGCTGCAGCAATTGCGCGACAGCCACCGCCAGTTGGGCCAGGCCTATGCACAAGGCCGCCAGGCGTTCCTGGCGGCAGGCGGCGACCCGGTAGCGGGCGACCGGGCGGTCAAAGGCGTGGACCGTGCCGCCAGTGAGCAAATGAGCGAACTGGTCGAGCAACTGCGCGCCGATGCTCGCCAGCGTGCAGCCAGCATCAATGCCAGTGCCGAGC > NC_002947/2419156‑2419447 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |