Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,495,413 | G→C | 8.2% | intergenic (+4/+19) | PP_2188 → / ← PP_2189 | tRNA 2‑methylthio‑N6‑isopentenyl adenosine(37) hydroxylase MiaE/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,495,413 | 0 | G | C | 8.2% | 146.8 / 4.3 | 49 | intergenic (+4/+19) | PP_2188/PP_2189 | tRNA 2‑methylthio‑N6‑isopentenyl adenosine(37) hydroxylase MiaE/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base G (26/18); new base C (2/2); total (28/21) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.31e-01 |
CTGAAACTGGCGCACAACTACGGTGATGAAGCGGACATCGCTCGCTGCGTCGAGCTGGTACGCGCGGCGGAAATGGAGCTG‑ATCCAGTCACCAGACCAGGAGCTGCGCTTCCACAGCGGCATCCCGCAGGCTTTGGCCGCCTGATGGGCACCAGGCGGCGCAGGCCTTAACTGCGCCGGCCCAGTAGCAGGCCTACCGCCAGCCCGAGGCCGGCAGAAATAGCAACAGTCTGCCAGGGGTGGCCGCCGATGTAGTCCTGGGTGGCGTCCACCACCGGTTGCGCCTTGCT > NC_002947/2495266‑2495554 | cTGAAACTGGCGCACAACTACGGTGATGAAGCGGACATCGCTCGCTGCGTCGAGCTGGTACGCGCGGCGGAAATGGAGCTG‑ATCCAGTCACCAGACCAGGAGCTGCGCTTCCACAGCGGCATCCCGCAGGCTTTGGCCGCCTGATggg > 1:164557/1‑148 (MQ=255) tGGCGCACAACTACGGTGATGAAGCGGACATCGCTCGCTGCGTCGAGCTGGTACGCGCGGCGGAAATGGAGCTG‑ATCCAGTCACCAGACCAGGAGCTGCGCTTCCACAGCGGCATCCCGCAGGCTTAGGCCGCCTGATGGGCACCAggc > 6:167334/1‑149 (MQ=255) cgcACAACTACGGTGATGAAGCGGACATCGCTCGCTGCGTCGAGCTGGTACGCGCGGCGGAAATGGAGCTG‑ATCCAGTCACCAGACCAGGAGCTGCGCTTCCACAGCGGCATCCCGCAGGCTTTGGCCGCCTGATGGGCACCAggcggc < 4:21699/149‑1 (MQ=255) cacaACTACGGTGATGAAGCGGACATCGCTCGCTGCGTCGAGCTGGTACGCGCGGCGGAAATGGAGCTG‑ATCCAGTCACCAGACCAGGAGCTGCGCTTCCACAGCGGCATCCCGCAGGCTTTGGCCGCCTGGTGCCCATCAggcggcca < 6:141409/149‑3 (MQ=255) acaACTACGGTGATGAAGCGGACATCGCTCGCTGCGTCGAGCTGGTACGCGCGGCGGAAATGGAGCTG‑ATCCAGTCACCAGACCAGGAGCTGCGCTTCCACAGCGGCATCCCGCAGGCTTTGGCCGCCTGATGGGCACCAGgcggcg > 7:178953/1‑147 (MQ=255) ctaCTACGGTGATGAAGCGGACATCGCTCGCTGCGTCGAGCTGGGACGCGCGGCGGAAATGGAGCTG‑ATCCAGGCACCAGACCAGGAGCTGCGCTTCCACAGCGGCATCGCGCAGGCTTTTGCCGCCTGATGGGCACCAGGCGGCGCAg < 5:167334/147‑1 (MQ=255) cTACGGTGATGAAGCGGACATCGCTCGCTGCGTCGAGCTGGTACGCGCGGCGGAAATGGAGCTG‑ATCCAGTCACCAGACCAGGAGCTGCGCTTCCACAGCGGCATCCCGCAGGCTTTGTCCGCCTGATGGGCACCAGGCGGCGCAGGcc < 2:41645/149‑1 (MQ=255) tACGGTGATGAAGCGGACATCGCTCGCTGCGTCGAGCTGGTACGCGCGGCGGAAATGGAGCTG‑ATCCAGTCACCAGACCAGGAGCTGCGCTTCCACAGCGGCATCCCGCAGGCTTTGGCCGCCTGATGGGCACCAGGCGGCGCAGGCCt > 1:167597/1‑149 (MQ=255) gaAGCGGACATCGCTCGCTGCGTCGAGCTGGTACGCGCGGCGGAAATGGAGCTG‑ATCCAGTCACCAGACCAGGAGCTGCGCTTCCACAGCGGCATCCCGCAGGCTTTGGCCGCCTGGTGCCCATCAggcggccaaag > 8:223566/1‑132 (MQ=255) gaAGCGGACATCGCTCGCTGCGTCGAGCTGGTACGCGCGGCGGAAATGGAGCTG‑ATCCAGTCACCAGACCAGGAGCTGCGCTTCCACAGCGGCATCCCGCAGGCTTTGGCCGCCTGGTGCCCATCAggcggccaaag < 7:223566/137‑6 (MQ=255) gCGGACATCGCTCGCTGCGTCGAGCTGGTACGCGCGGCGGAAATGGAGCTG‑ATCCAGTCACCAGACCAGGAGCTGCGCTTCCACAGCGGCATCCCGCAGGCTTTGGCCGCCTGATGGGCACCAGGCGGCGCAGGCCTTAACTGCGCCgg > 1:110118/1‑149 (MQ=255) aTCGCTCGCTGCGTCGAGCTGGTACGCGCGGCGGAAATGGAGCTGCATCCAGTCACCAGACCAGGAGCTGCGCTTCCACAGCGGCATCCCGCAGGCTTTGGCCGCCTGATGGGCACCAGGCGGCGCAGGCCTTAACTGCGCCGGCCCAg > 1:224725/1‑149 (MQ=255) ctGCGTCGAGCTGGTACGCGCGGCGGAAATGGAGCTG‑ATCCAGTCACCAGACCAGGAGCTGCGCTTCCACAGCGGCATCCCGCAGGCTTTGGCCGCCTGATGGGCACCAGGCGGCGCAGGCCTTAACTGCGCCGGCCCAGTAGCAGGcc > 7:263458/1‑149 (MQ=255) gAGCTGGTACGCGCGGCGGAAATGGAGCTG‑ATCCAGTCACCAGACCAGGAGCTGCGCTTCCACAGCGGCATCCCGCAGGCTTTGGCCGCCTGATGGGCACCAGGCGGCGCAGGCCTTAACTGCGCCGGCCCAGTAGCAGGCCTACCGc > 8:93827/1‑148 (MQ=255) gTACGCGCGGCGGAAATGGAGCTG‑ATCCAGTCACCAGACCAGGAGCTGCGCTTCCACAGCGGCATCCCGCAGGCTTTGGCCGCCTGATGGGCACCAGGCGGCGCAGGCCTTAACTGCGCCGGCCCAGTAGCAGGCCTACCGCCAGccc > 4:10099/1‑148 (MQ=255) tACGCGCGGCGGAAATGGAGCTG‑ATCCAGTCACCAGACCAGGAGCTGCGCTTCCACAGCGGCATCCCGCAGGCTTTGGCCGCCTGATGGGCACCAGGCGGCGCAGGCCTTAACTGCGCCGGCCCAGTAGCAGGCCTACCGCCAGCCCGa < 7:126661/149‑1 (MQ=255) cgcgGCGGAAATGGAGCTG‑ATCCAGTCACCAGACCAGGAGCTGCGCTTCCACAGCGGCATCCCGCAGGCTTTGGCCGCCTGATGGGCACCAGGCGGCGCAGGCCTTAACTGCGCCGGCCCAGTAGCAGGCCTACCGCCAGCCCGAGGcc < 8:178953/149‑1 (MQ=255) gcggcgGAAATGGAGCTG‑ATCCAGTCACCAGACAAGGAGCTGCGCTTCCACAGCGGCATCCCGCAGGCTTTGGCCGCCTGATGGGCACCAGGCGGCGCAGGCCTTAACTGAGCCGGCCCAGTAGACGGCCTACCGCCACCCCCAGGCCg > 8:126938/1‑149 (MQ=255) cggAAATGGAGCTG‑ATCCAGTCACCAGACCAGGAGCTGCGCGTCCACAGCGGCATCCCGCAGGCTTTGGCCGCCTGATGGGCACCAGGCGGCGCAGGCCTTAACTGCGCCGGCCCAGTAGCAGGCCTACCGCCAGCCCGAGGCCGGCAg < 4:15366/149‑1 (MQ=255) tGGAGCTG‑ATCCAGTCACCAGACCAGGAGCTGCGCTTCCACAGCGGCATCCCGCAGGCTTTGGCCGCCTGATGGGCACCAGGCGGCGCAGGCCTTAACTGCGCCGGCCCAGTAGCAGGCCTACCGCCAGCCCGAGGCCGGCAGAAATAg < 2:164557/149‑1 (MQ=255) aGCTG‑ATCCAGTCACCAGACCAGGAGCTGCGCTTCCACAGCGGCATCCCGCAGGCTTTGGCCGCCTGATGGGCACCAGGCGGCGCAGGCCTTAACTGCGCCGGCCCAGTAGCAGGCCTACCGCCAGCCCGAGGCCGGCAGAAATAGCaa < 7:93827/149‑1 (MQ=255) gCTG‑ATCCAGTCACCAGACCAGGAGCTGCGCTTCCACAGCGGCATCCCGCAGGCTTTGGCCGCCTGATGGGCACCAGGCGGCGCAGGCCTTAACTGCGCCGGCCCAGTAGCAGGCCTACCGCCAGCCCGAGGCCGGCAGAAATAGCaa > 7:160673/1‑148 (MQ=255) g‑ATCCAGTCACCAGACCAGGAGCTGCGCTTACACAGCGGCATACCGCAGGCTTTGGCCGCCTGATGGGCACCAGGCGGCGCAGGCCTTAACTGCGCCGGCCCAg > 1:140628/1‑104 (MQ=255) gatggaGTCACGAGAGCAGGAGCTGCGCTTCCACAGCTGCATGCCGCAGGGTTTGGCCGCCTGATGGTCACCAGGCGGCGCAGGGCTTAACTGCGCCGTCCCAg < 2:140628/99‑1 (MQ=255) ccAGTCACCAGACCAGGAGCTGCGCTTCCACAGCGGCATCCCGCAGGCTTTGGCCGCCTGATGGGCACCAGGCGGCGCAGGCCTTAACTGCGCCGGCCCAGTAGCAGGCCTACCGCCAGCCCGAGGCCGGCAGAAATAGCAACAGTCTg > 4:168077/1‑149 (MQ=255) aGTCACCAGACCAGGAGCTGCGCTTCCACAGCGGCATCCCGCAGGCTTTGGCCGCCTGATGGGCACCAGGCGGCGCAGGCATTAACTGCGCCGGCCCAGTAGCAGGCCTACCGCCAGCCCGAGGCCGGCAGAAATAGAAACAGTCTGc > 2:87555/1‑148 (MQ=255) aGTCACCAGACCAGGAGCTGCGATTCCACAGCGGCATCCCGCAGGCTTTGGCCGCCTGATGGGCACCAGGCGGCGCAGGCCTTAACTGCGCCGGCCCAGTAGCAGGCCTACCGCCAGCCCGAGGCCGGCAGAAATAGCAACAGTCTGcc > 8:15899/1‑149 (MQ=255) gTCACCAGACCAGGAGCTGCGCTTCCACAGCGGCATCCCGCAGGCTTTGGCCGCCTGATGGGCACCAGGCGGCGCAGGCCTTAACTGCGCCGGCCCAGTAGCAGGCCTACCGCCAGCCCGAGGCCGGCAGAAATAGCAACAGTCTGc > 2:291723/1‑147 (MQ=255) accacaccacGCGCCGCGCCGCCACAGCGGCATCCCCCAGGCTTTGGCCGCCTGATGGGCACCACGCGGCGCAGGCCTTAACTGCGCCGGCCCAGTAGCAGGCCTACCGCCAGCCCGAGGCCGGCAGAAATAGCAACAGTCTGCCAggg < 4:286696/149‑1 (MQ=255) ccagaccagGAGCTGCGCTTCCACAGCGGCATCCCGCAGGCTTTGGCCGCCTGATGGGCACCAGGCGGCGCAGGCCTTAACTGCGCCGGCCCAGTAGCAGGCCTACCGCCAGCCCGAGGCCGGCAGAAATAGCAACAGTCTGCCAgggg < 8:165630/149‑1 (MQ=255) agaccagGAGCTGCGCTTCCTCAGCGGCATCCCGCAGGCTTTGGCCGCCTGATGGGCACCAGGCGGCGCAGGCCTTAACTGCGCCGGCCCAGTAGCAGGCCTACCGCCAGCCCGAGGCCGGCAGAAATAGCAACAGTCTGCCAGGGGTg < 7:126938/149‑1 (MQ=255) agaccagGAGCTGCGCTTCCACAGCGGCATCCCGCAGGCTTTGGCCGCCTGATGGGCACCAGGCGGCGCAGGCCTTAACTGCGCCGGCCCAGTAGCAGGCCTACCGCCAGCCCGAGGCCGGCAGAAATAGCAACAGTCTGCCAGGGGTg > 6:40963/1‑149 (MQ=255) agaccagGAGCTGCGCTTCCACAGCGGCATCCCGCAGGCTTTGGCCGCCTGATGGGCACCAGGCGGCGCAGGCCTTAACTGCGCCGGCCCAGTAGCAGGCCTACCGCCAGCCCGAGGCCGGCAGAAATAGCAACAGTCTGCCAGGGGTg > 3:236346/1‑149 (MQ=255) cTGCGCTTCCACAGCGGCATCCCGCAGGCTTTGGCCGCCTGATGGGCACCAGTCGGCGCAGGCCTTAACTGCGCCGGCCCAGTAGCAGGCCTACCGCCAGCCCGACGCCGCCAGAAATAGCAACAGACTGCCAGCGCTGgcacatcgg > 6:74673/1‑141 (MQ=255) cgcTTCCACAGCGGCATCCCGCAGGCTTTGGCCGCCTGATGGGCACCAGGCGGCGCAGGCCTTAACTGCGCCGGCCCAGTAGCAGGCCTACCGCCAGCCCGAGGCCGGCAGAAATAGCAACAGTCTGCCAGGGGTGGCCGCCGATGTa < 2:167597/148‑1 (MQ=255) ttCCACAGCGGCATCCCGCAGGCTTTGGCCGCCTGATGGGCACCAGGCGGCGCAGGCCTTAACTGCGCCGGCCCAGTAGCAGGCCTACCGCCAGCCCGAGGCCGGCAGAAATAGCAACAGTCTGCCAGGGGTGGCCGCCGATGTAGTcc > 6:191426/1‑149 (MQ=255) ttCCACAGCGGCATCCCGCAGGCTTTGGCCGCCTGATGGGCACCAGGCGGCGCAGGCCTTAACTGCGCCGGCCCAGTAGCAGGCCTACCGCCAGCCCGAGGCCGGCAGAAATAGCAACAGTCTGCCAGGGGTGGCCGCCGATGTAGTcc > 6:44498/1‑149 (MQ=255) ccACAGCGGCATCCCGCAGGCTTTGGCCGCCTGATGGGCACCAGGCGGCGCAGGCCTTAACTGCGCCGGCCCAGTAGCAGGCCTACCGCCAGCCCGAGGCCGGCAGAAATAGCAACAGTCTGCCAGGGGTGGCCGCCGATGt > 1:136547/1‑142 (MQ=255) ccACAGCGGCATCCCGCAGGCTTTGGCCGCCTGATGGGCACCAGGCGGCGCAGGCCTTAACTGCGCCGGCCCAGTAGCAGGCCTACCGCCAGCCCGAGGCCGGCAGAAATAGCAACAGTCTGCCAGGGGTGGCCGCCGATGt < 2:136547/142‑1 (MQ=255) cacaGCGGCATCCCGCAGGCTTTGGCCGCCTGATGGGCACCAGGCGGCGCAGGCCTTAACTGCGCCGGCCCAGTAGCAGGCCTACCGCCAGCCCGAGGCCGGCAGAAATAGCAACAGTCTGCCAGGGGTGGCCGCCGATGTAGTCCTgg < 4:68767/149‑1 (MQ=255) cacaGCGGCATCCCGCAGGCTTTGGCCGCCTGATGGGCACCAGGCGGCGCAGGCCTTAACTGCGCCGGCCCAGTAGCAGGCCTACCGCCAGCCCGAGGCCGGCAGAAATAGCAACAGTCTGCCAGGGGTGGCCGCCGATGTAGTCCTgg > 3:68767/1‑149 (MQ=255) aGCGGCATCCCGCAGGCTTTGGCCGCCTGATGGGCACCAGGCGGCGCAGGCCTTAACTGCGCCGGCCCAGTAGCAGGCCTACCGCCAGCCCGAGGCCGGCAGAAATAGCAACAGTCTGCCAGGGGTGGCCGCCGATGTAGTCCTGGGTg < 3:10099/149‑1 (MQ=255) cGGCATCCCGCAGGCTTTGGCCGCCTGATGGGCACCAGGCGGCGCAGGCCTTAACTGCGCCGGCCCAGTAGCAGGCCTACCGCCAGCCCGAGGCCGGCAGAAATAGCAACAGTCTGCCAGGGGTGGCCGCCGATGTAGTCCTGGGTGGc > 1:146697/1‑149 (MQ=255) cGGCATCCCGCAGGCTTTGGCCGCCTGAGGGGCACCAGGCGGCGCAGGCCTTAACTGCGCCGGCCCAGTAGCAGGCCTACCGCCAGCCCGAGGCCGGCAGAAATAGCAACAGTCTGCCAGGGGTGGCCGCCGATGTAGTCCTGGGTGGc < 2:115338/149‑1 (MQ=255) gCATCCCGCAGGCTTTGGCCGCCTGATGGGCACCAGGCGGCGCAGGCCTTAACTGCGCCGGCCCAGTAGCAGGCCTACCGCCAGCCCGAGGCCGGCAGAAATAGCAACAGTCTGCCAGGGGTGGCCGCCGAAGTAGTCCTGGGAGGcct > 7:239486/1‑147 (MQ=255) aGGCTTTGGCCGCCTGATGGGCACCAGGCGGCGCAGGCCTTAACTGCGCCGGCCCAGTAGCAGGCCTACCGCCAGCCCGAGGCCGGCAGAAATAGCAACAGTCTGCCAGGGGTGTCCGCCGATGTAGTCCTGGGTGGCGTCCACCACCg > 2:67624/1‑149 (MQ=255) tttGGCCGCCTGATGGGCACCAGGCGGCGCAGGCCTTAACTGCGCCGGCCCAGTAGCAGGCCTACCGCCAGCCCGAGGCCGGCAGAAATAGCAACAGTCTGCCAGGGGTGGCCGCCGATGTAGTCCTgg > 6:313395/1‑129 (MQ=255) tttGGCCGCCTGATGGGCACCAGGCGGCGCAGGCCTTAACTGCGCCGGCCCAGTAGCAGGCCTACCGCCAGCCCGAGGCCGGCAGAAATAGCAACAGTCTGCCAGGGGTGGCCGCCGATGTAGTCCTgg < 5:313395/129‑1 (MQ=255) ctgcgccgccTGGTGCCCATCAGGCGGCGCAGGCCTTAACTGCGCCGGCCCAGTAGCAGGCCTACCGCCAGCCCGAGGCCGGCAGAAATAGCAACAGTCTGCCAGGGGTGGCCGCCGATGTAGTCCTGGGTGGCGTCCACCACCGGTTg > 2:6533/5‑149 (MQ=255) cTGATGGGCACCAGGCGGCGCAGGCCTTAACTGCGCCGGCCCAGTAGCAGGCCTACCGCCAGCCCGAGGCCGGCAGAAATAGCAACAGTCTGCCAGGGGTGGCCGCCGATGTAGTCCTGGGTGGCGTCCACCACCGGTTGCGCCTtgct < 8:160673/149‑1 (MQ=255) | CTGAAACTGGCGCACAACTACGGTGATGAAGCGGACATCGCTCGCTGCGTCGAGCTGGTACGCGCGGCGGAAATGGAGCTG‑ATCCAGTCACCAGACCAGGAGCTGCGCTTCCACAGCGGCATCCCGCAGGCTTTGGCCGCCTGATGGGCACCAGGCGGCGCAGGCCTTAACTGCGCCGGCCCAGTAGCAGGCCTACCGCCAGCCCGAGGCCGGCAGAAATAGCAACAGTCTGCCAGGGGTGGCCGCCGATGTAGTCCTGGGTGGCGTCCACCACCGGTTGCGCCTTGCT > NC_002947/2495266‑2495554 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |