Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,526,654 | A→G | 7.8% | I300V (ATC→GTC) | PP_2215 → | acetyl‑CoA acetyltransferase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,526,654 | 0 | A | G | 7.8% | 144.1 / 2.9 | 51 | I300V (ATC→GTC) | PP_2215 | acetyl‑CoA acetyltransferase |
Reads supporting (aligned to +/- strand): ref base A (21/26); new base G (2/2); total (23/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.48e-01 |
GCGCTGCGGCGCTGGTACTGATGCGCCGCTCCGAGGCCGACAAACGTGGCCTCAAGCCATTGGCCGTCATCCACGGCCACGCCGCCTTTGCCGACACCCCGGCGCTGT‑TCCCGACCGCCCCGATCGGCGCGATCGACAAACTGATGAAACGCACCGGCTGGAACCTGGCCGAAGTCGACCTGTTCGAGATCAACGAGGCCTTCGCCGTGGTCACCCTGGCGGCCATGAAACACCTCGACCTGCCACACGACAAGGTCAATATCCACGGCGGCGC > NC_002947/2526523‑2526796 | gcgctgcggcgctgGTACTGATGCGCCGCTCCGAGGCCGACAAACGTGGCCTCAAGCCATTGGCCGTCATCCACGGCCACGCCGCCTTTGCCGACACCCCGGCGCTGT‑TCCCGACCGCCCCGATCGGCGCGATCGACAAACTGATGaaa < 2:275558/149‑1 (MQ=255) aTGCGCCGCTCCGAGGCCGACAAACGTGGCCTCAAGCCATTGGCCGTCATCCACGGCCACGCCGCCTTTGCCGACACCCCGGCGCTGTATCCCGACCGCCCCGATCGGCGCGATCGACAAACTGATGAAACGCACCGGCTGGAACCTgg < 1:248929/149‑1 (MQ=255) gcgcCGCTCCGAGGCCGACAAACGTGGCCTCAAGCCATTGGCCGTCATCCACGGCCACGCCGCCTTTGCCGACACCCGGGCGCTGT‑TCCCGACCGCCCCGATCGGCGCGATCGACAAACTGATGAAACGCACCGGCTGGAACCTGGcc > 1:100140/1‑148 (MQ=255) gcgcCGCTCCGAGGCCGACAAACGTGGCCTCAAGCCATTGGCCGTCATCCACGGCCACGCCGCCTTTGCCGACACCCCGGCGCTGT‑TCCCGACCGCCCCGATCGGCGCGATCGACAAACTGATGAAACGCACCGGCTGGAACCTGGcc > 7:11605/1‑148 (MQ=255) gcgcCGCTCCGAGGCCGACAAACGTGGCCTCAAGCCATTGGCCGTCATCCACGGCCACGCCGCCTTTGCCGACACCCCGGCGCTGT‑TCCCGACCGCCCCGATCGGCGCGATCGACAAACTGATGAAACGCACCGGCTGGAACCTGGcc < 2:100140/148‑1 (MQ=255) gccgcTCCGAGGCCGACAAACGTGGCCTCAAGCCATTGGCCGTCATCCACGGCCACGCCGCCTTTGCCGACACCCCGGCGCTGT‑TCCCGACCGCCCCGATCGGCGCGATCGACAAACTGATGAAACGCACCGGCTGGAAc < 5:206056/140‑1 (MQ=255) gccgcTCCGAGGCCGACAAACGTGGCCTCAAGCCATTGGCCGTCATCCACGGCCACGCCGCCTTTGCCGACACCCCGGCGCTGT‑TCCCGACCGCCCCGATCGGCGCGATCGACAAACTGATGAAACGCACCGGCTGGAAc > 6:206056/1‑140 (MQ=255) ccgcTCCGAGGCAGACAAACGTGGCCTCAAGCCATTGGCCGTCATCCACGGCCACGCCGCCATTGCCGACACCCCGGCGCTGT‑TCCCGACCGCCCCGATCGGCGCGATCGACAAACAGATCAAACTCACCGCCAGGAACCTGGCCGAAg > 6:213649/1‑149 (MQ=255) cGAGGCCGACAAACGTGGCCTCAAGCCATTGGCCGTCATCCACGGCCACGCCGCCTTTGCCGACACCCCGGCGCTGT‑TCCCGACCGCCCCGATCGGCGCGATCGACAAACTGATGAAACGCACCGGCTGGAACCTGGCCGAAGTCGAc < 6:255085/148‑1 (MQ=255) gACAAACGTGGCCTCAAGCCATTGGCCGTCATCCACGGCCACGCCGCCTTTGCCGACACCCCGGCGCTGT‑TCCCGACCGCCCCGATCGGCGCGATCGACAAACTGATGAAACGCACCGGCTGGAACCTGGCCGAAGTCGACCTGTTc > 5:62947/1‑147 (MQ=255) cAAACGTGGCCTCAAGCCATTGGCCGTCATCCACGGCCACGCCGCCTTTGCCGACACCCCGGCGCTGT‑TCCCGACCGCCCCGATCGGCGCGATCGACAAACTGATGAAACGCACCGGCTGGAACCTGGCCGAAGTCGACCTGTTc > 7:253907/1‑145 (MQ=255) cAAACGTGGCCTCAAGCCATTGGCCGTCATCCACGGCCACGCCGCCTTTGCCGACACCCCGGCGCTGT‑TCCCGACCGCCCCGATCGGCGCGATCGACAAACTGATGAAACGCACCGGCTGGAACCTGGCCGAAGTCGACCTGTTCgaga < 7:22671/149‑1 (MQ=255) gCCTCAAGCGATTGGCCGTCATCCACGGCCACGCCGCCTTTGCCGACACCCCGGCGGTGT‑TCCCGAGCGCCCCGATCGGCGCGATCGAGTAACTGATGAAACGCACCGGCTGGAACCTGGCCGAAGTCGAGCTGTTCGAGATCAACGAg < 5:213649/149‑1 (MQ=255) tCAAGCCATTGGCCGTCATCCACGGCCACGCCGCCTTTGCCGACACCCCGGCGCTGT‑TCCCGACCGCCCCGATCGGCGCGATCGACAAACTGATGAAACGCACCGGCTGGAACCTGGCCGAAGTCGACCTGTTCGAGATCAACGAGGcc > 6:143644/1‑149 (MQ=255) cATTGGCCGTCATCCACGGCCACGCCGCCTTTGCCGACACCCCGGCGCTGT‑TCCCGACCGCCCCGATCGGCGCGATCGACAAACTGATGAAACGCACCGGCTGGAACCTGGCCGAAGTCGACCTGTTCGAGATCAACGAGGCCTTCGcc > 3:166203/1‑149 (MQ=255) ttGGCCGTCATCCACGGCCACGCCGCCTTTGCCGACACCCCGGCGCTGT‑TCCCGACCGCCCCGATCGGCGCGATCGACAAACTGATGAAACGCACCGGCTGGAACCTGGCCGAAGTCGACCTGTTCGAGATCAACGAGGCCTTCGCCGt < 6:278325/149‑1 (MQ=255) gCCGTCATCCACGGCCACGCCGCCTTTGCCGACACCCCGGCGCTGT‑TCCCGACCGCCCCGATCGGCGCGATCGACAAACTGATGAAACGCACCGGCTGGAACCTGGCCGAAGTCGACCTGTTCGAGATCAACGAGGCCTTCGCCGTGGt > 6:117954/1‑149 (MQ=255) aTCCACGGCCACGCCGCCTTTGCCGACACCCCGGCGCTGT‑TCCCGACCGCCCCGATCGGCGCGATCGACAAACTGATGAAACGCACCGGCTGGAACCTGGCCGAAGTCGACCTGTTCGAGATCAACGAGGCCTTCGCCGTGGTCACCCt < 5:143644/149‑1 (MQ=255) tCCACGGCCACGCCGCCTTTGCCGACACCCCGGCGCTGT‑TCCCGACCGCCCCGATCGGCGCGATCGACAAACTGATGAAACGCACCGGCTGGAACCTGGCCGAAGTCGACCTGTTCGAGATCAACGAGGCCTTCGCCGTGGTCACCCTg > 1:181551/1‑149 (MQ=255) ccACGGCCACGCCGCCTTTGCCGACACCCCGGCGCTGT‑TCCCGACCGCCCCGATCGGCGCGATCGACAAACTGATGAAACGCACCGGCTGGAACCTGGCCGAAGTCGACCTGTTCGAGATCAACGAGGCCTTCGCCGTGGTCACCCTgg > 6:85094/1‑149 (MQ=255) cACGGCCACGCCGCCTTTGCCGACACCCCGGCGCTGT‑TCCCGACCGCCCCGATCGGCGCGATCGACAAACTGATGAAACGCACCGGCTGGAACCTGGCCGAAGTCGACCTGTTCGAGATCAACGAGGCCTTCGCCGTGGTCACCCTggc > 4:234248/1‑149 (MQ=255) cACGGCCACGCCGCCTTTGCCGACACCCCGGCGCTGT‑TCCCGACCGCCCCGATCGGCGCGATCGACAAACTGATGAAACGCACCGGCTGGAACCTGGCCGAAGTCGACCTGTTCGAGATCAACGAGGCCTTCGCCGTGGTCACCCTggc < 8:11605/149‑1 (MQ=255) aCGGCCACGCCGCCTTTGCCGACACCCCGGCGCTGT‑TCCCGACCGCCCCGATCGGCGCGATCGACAAACTGATGAAACGCACCGGCTGGAACCTGGCCGAAGTCGACCTGTTCGAGATCAACGAGGCCTTCGCCGTGGTCACCCTggcg > 5:131364/1‑149 (MQ=255) aCGGCCACGCCGCCTTTGCCGACACCCCGGCGCTGT‑TCCCGACCGCCCCGATCGGCGCGATCGACAAACTGATGAAACGCACCGGCTGGAACCTGGCCGAAGTCGACCTGTTCGAGATCAACGAGGCCTTCGCCGTGGTCACCCTggcg < 5:213655/149‑1 (MQ=255) cACGCCGCCTTTGCCGACACCCCGGCGCTGT‑TCCCGACCGCCCCGATCGGCGCGATCGACAAACTGATGAAACGCACCGGCTGGAACCTGGCCGAAGTCGACCTGTTCGAGATCAACGAGGCCTTCGCCGTGGTCACCCTGGCGGCCAt < 8:253907/149‑1 (MQ=255) cgccgcCTTTGCCGACACCCCGGCGCTGT‑TCCCGACCGCCCCGATCGGCGCGATCGACAATCTGATGAAACGCACCGGCGTGAACCTGGCCGAAGTCGACCTGTTCGAGATCAACGAGGCCTTCGCCGTGGTCACCCTGGCGGCCATgt < 3:79714/149‑2 (MQ=255) cgccTTTGCCGACACCCCGGCGCTGT‑TCCCGACCGCCCCGATCGGCGCGATCGACAAACTGATGAAACGCACCGGCTGGAACCTGGCCGAAGTCGACCTGTTCGAGATCAACGAGGCCTTCGCCGTGGTCACCCTGGCGGCCATGAAac < 4:166203/149‑1 (MQ=255) cTTTGCCTACCCCCCCTCGCTGT‑TCCCGACCGCCCCGATCGGCGCGATCGACAAACTGATGAAACGCACCGGCTGGAACCTGGCCGAAGTCGACCTGTTCGAGATCAACGAGGCCTTCGCCGTGGTCACCCTGGCGGCCATGAAac < 6:221184/146‑1 (MQ=255) cTTTGCCGACACCCCGGCGCTGT‑TCCCGACCGCCCCGATCGGCGCGATCGACAAACTGATGCAACGCACCGGCTGGAACCTGGCCGAAGTCGACCTGTTCGAGATCAACGAGGCCTTCGCCGTGGTCACCCTGGCGGCCATGAAac > 5:221184/1‑146 (MQ=255) cGACACCCCGGCGCTGT‑TCCCGACCGCCCCGATCGGCGCGATCGACAAACTGATGAAACGCACCGGCTGGAACCTGGCCGAAGTCGACCTGTTCGAGATCAACGAGGCCTTCGCCGTGGTCACCCTGGCGGcc > 4:307209/1‑133 (MQ=255) cGACACCCCGGCGCTGT‑TCCCGACCGCCCCGATCGGCGCGATCGACAAACTGATGAAACGCACCGGCTGGAACCTGGCCGAAGTCGACCTGTTCGAGATCAACGAGGCCTTCGCCGTGGTCACCCTGGCGGcc < 3:307209/133‑1 (MQ=255) gACACCCCGGCGCTGT‑TCCCGACCGCCCCGATCGGCGCGATCGACAAACTGATGaaa < 8:280445/57‑1 (MQ=255) gACACCCCGGCGCTGT‑TCCCGACCGCCCCGATCGGCGCGATCGACAAACTGATGaaa > 7:280445/1‑57 (MQ=255) cacCCCGGCGCTGT‑TCCCGACCGCCCCGATCGGCGCGATCGACAAACTGATGAAACGCACCGGCTGGAACCTGGCCGAAGTCGACCTGTTCGAGATCAACGAGGCCTTCGCCGTGGTCACCCTGGCGGCCATGAAACACCTCGACCTGc < 2:181551/149‑1 (MQ=255) cccGGCGCTGT‑TCCCGACCGCCCCGATCGGCGCGATCGACAAACTGATGAAACGCACCGGCTGGAACCTGGCCGAAGTCGACCTGTTCGAGATCAACGAGGCCTTCGCCGTGGTCACCCTGGCGGcc > 2:198406/1‑127 (MQ=255) cccGGCGCTGT‑TCCCGACCGCCCCGATCGGCGCGATCGACAAACTGATGAAACGCACCGGCTGGAACCTGGCCGAAGTCGACCTGTTCGAGATCAACGAGGCCTTCGCCGTGGTCACCCTGGCGGcc < 1:198406/127‑1 (MQ=255) gcgcTGT‑TCCCGACCGCCCCGATCGGCGCGATCGACAAACTGATGAAACGCACCGGCTGGAACCTGGCCGAAGTCGACCTGTTCGAGATCAACGAGGCCTTCGCCGTGGTCACCCTGGCGGCCATGAAACACCTCGACCTGCCACACGa < 5:15608/149‑1 (MQ=255) tGT‑TCCCGACCGCCCCGATCGGCGCGATCGACAAACTGATGAAACGCACCGGCTGGAACCTGGCCGAAGTCGACCTGTTCGAGATCAACGAGGCCTTCGCCGTGGTCACCCTGGCGGCCATGAAACACCTCGa < 8:201177/133‑1 (MQ=255) tGT‑TCCCGACCGCCCCGATCGGCGCGATCGACAAACTGATGAAACGCACCGGCTGGAACCTGGCCGAAGTCGACCTGTTCGAGATCAACGAGGCCTTCGCCGTGGTCACCCTGGCGGCCATGAAACACCTCGa > 7:201177/1‑133 (MQ=255) t‑tCCCGACCGCCCCGATCGGCGCGATCGACAAACTGATGAAACGCACCGGCTGGAACCTGGCCGAAGTCGACCTGTTCGAGATCAACGAGGCCTTCGCCGTGGTCACCCTGGCGGCCATGAAACACCTCGACCTGCCACACGACAAg < 5:85094/147‑1 (MQ=255) tgtcGATCGCGCCGATCGGGGCGGTCGACAAACTGATGAAACGCACCGGCTGGAACCTGGCCGAAGTCGACCTGTTCGAGATCAACGAGGCCTTCGCCGTGGTCACCCTGGCGGCCATGAAACACCTCGACCTGCCACACGACAAGGt > 2:88494/4‑148 (MQ=255) ccGACCGCCCCGATCGGCGCGATCGACAAACTGATGAAACGCACCGGCTGGAACCTGGCCGAAGTCGACCTGTTCGAGATCAACGAGGCCTTCGCCGTGGTCACCCTGGCGGCCATGAAACACCTCGACCTGCCACACGACAAGGTCaa > 3:85774/1‑149 (MQ=255) cGATCGCGCCGATCGGGGCGGTCGACAAACTGATGAAACGCACCGGCTGGAACCTGGCCGAAGTCGACCTGTTCGAGATCAACGAGGCCTTCGCCGTGGTCACCCTGGCGGcc > 2:188275/1‑113 (MQ=255) cGATCGCGCCGATCGGGGCGGTCGACAAACTGATGAAACGCACCGGCTGGAACCTGGCCGAAGTCGACCTGTTCGAGATCAACGAGGCCTTCGCCGTGGTCACCCTGGCGGcc < 1:188275/113‑1 (MQ=255) ccccGATCGGCGCGATCGACAAACTGATGAAACGCACCGGCTGGAACCTGGCCGAAGTCGACCTGt < 1:271567/66‑1 (MQ=255) ccccGATCGGCGCGATCGACAAACTGATGAAACGCACCGGCTGGAACCTGGCCGAAGTCGACCTGt > 2:271567/1‑66 (MQ=255) ccccGATCGGCGCGATCGACAAACTGATGAAACGCACCGGCTGGAACCTGGCCGAAGTCGACCTGTTCGAGATCAACGAGGCCTTCGCCGTGGTCACCCTGGCGGCCa > 7:115636/1‑108 (MQ=255) ccccGATCGGCGCGATCGACAAACTGATGAAACGCACCGGCTGGAACCTGGCCGAAGTCGACCTGTTCGAGATCAACGAGGCCTTCGCCGTGGTCACCCTGGCGGCCa < 8:115636/108‑1 (MQ=255) gccGATCGGGGCGGTCGACAAACTGATGAAACGCACCGGCTGGAACCTGGCCGAAGTCGACCTGTTCGAGATCAACGAGGCCTTCGCCGTGGTCACCCTGGCGGCCATGAAACACCTCGACCTGCCACACGACAAGGTCAATATCCAcg < 1:88494/148‑1 (MQ=255) gATCGGCGCGATCGACAAACTGATGAAACGCACCGGCTGGAACCTGGCCGAAGTCGACCTGTTCGAGATCAACGAGGCCTTCGCCGTGGTCACCCTGGCGGCCATGAAACACCTCGACCTGCCACACGACAAGGTCAATATCCAcggcg < 6:62947/149‑1 (MQ=255) ggCGCGATCGACAAACTGATGAAACGCACCGGCTGGAACCTGGCCGAAGTCGACCTGTTCGAGATCAACGAGGCCTTCGCCGTGGTCACCCTGGCGGCCATGAAACACCTCGACCTGCCACACGACAAGGTCAATATCCACGGCGgcgc < 6:131364/149‑1 (MQ=255) | GCGCTGCGGCGCTGGTACTGATGCGCCGCTCCGAGGCCGACAAACGTGGCCTCAAGCCATTGGCCGTCATCCACGGCCACGCCGCCTTTGCCGACACCCCGGCGCTGT‑TCCCGACCGCCCCGATCGGCGCGATCGACAAACTGATGAAACGCACCGGCTGGAACCTGGCCGAAGTCGACCTGTTCGAGATCAACGAGGCCTTCGCCGTGGTCACCCTGGCGGCCATGAAACACCTCGACCTGCCACACGACAAGGTCAATATCCACGGCGGCGC > NC_002947/2526523‑2526796 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |