Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,542,854 | T→G | 14.3% | L105R (CTG→CGG) ‡ | PP_2235 → | hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,542,854 | 0 | T | G | 14.3% | 65.3 / 6.1 | 28 | L105R (CTG→CGG) ‡ | PP_2235 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base T (12/12); new base G (2/2); total (14/14) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.51e-01 |
TTGCAGTACCTGCAATGGCAGTCACGCCAGGCCTGGGCTGCGGCGGCCGTGCACTTCGTCGAGGAATCGTTTCTTGACCTGCTGGGCCAGCATCAGGCACGCGGTGTCAACTTCGCCGCCTACCAGGCCCTGCGCAGCCTGGTGCGCGGGGACGATGGCGTGCTGCATTGCCAGATGGGCGGTCCTCAGGCATACCAAGGTGCGTAGTGCGGGTAGCGATCCAGGCGGGCACCGATGACCATTTCGCTGATCCATGCCGCCAGGAGCGAGCTATACGCTTTCTGGC > NC_002947/2542715‑2543000 | ttGCAGTACCTGCAATGGCAGTCACGCCAGGCCTGGGCTGCGGCGGCCGTGCACTTCGTCGAGGAATCGTTTCTTGACCTGCTGGGCCAGCATCAGGCACGCGGTGTCAACTTCGCCGCCTACCAGGCCCTGCGCAGCCTGGTGCGCgg < 3:106628/149‑1 (MQ=255) tGGCAGTCACGCCAGGCCTGGGCTGCGGCGGCCGTGCACTTCGTCGAGGAATCGTTTCTTGACCTGCTGGGCCAGCATCAGGCACGCGGTGTCAACTTCGCCGCCTACCAGGCCCTGCGCAGCCTGGTGCGCGGGGACGATGGCGtgct > 7:154692/1‑149 (MQ=255) ccAGGCCTGGGCTGCGGCGGCCGTGCACTTCGTCGAGGAATCGTTTCTTGACCTGCTGGGCCAGCATCAGGCACGCGGTGTCAACTTCGCCGCCTACCAGGCCCTGCGCAGCCTGGTGCGCGGGGACGATGGCGTGCTGCATTGCCAGa < 3:2304/149‑1 (MQ=255) tGCGGCGGCCGTGCACTTCGTCGAGGAATCGTTTCTTGACCTGCTGGGCCAGCATCAGGCACGCGGTGTCAACTTCGCCGCCTACCAGGCCCCGCGCACCAGGCTGCGCagggc < 4:39722/114‑2 (MQ=255) tGCGGCGGCCGTGCACTTCGTCGAGGAATCGTTTCTTGACCTGCTGGGCCAGCATCAGGCACGCGGTGTCAACTTCGCCGCCTACCAGGCCCCGCGCACCAGGCTGCGCagggc > 3:39722/1‑113 (MQ=255) ggcggcCGTGCACTTCGTCGAGGAATCGTTTCTTGACCTGCTGGGCCAGCATCAGGCACGCGGTGTCAACTTCGCCGCCTACCAGGCCCTGCGCAGCCTGGTGCGCGGGGACGATGGCGTGCTGCAtt > 4:20624/1‑128 (MQ=255) ggcggcCGTGCACTTCGTCGAGGAATCGTTTCTTGACCTGCTGGGCCAGCATCAGGCACGCGGTGTCAACTTCGCCGCCTACCAGGCCCTGCGCAGCCTGGTGCGCGGGGACGATGGCGTGCTGCAtt < 3:20624/128‑1 (MQ=255) gcggcCGTGCACTTCGTCGAGGAATCGTTTCTTGACCTGCTGTGCCAGCATCAGGCACGCGGTGTCAACTTCGCCGCCTACCAGGCCCTGCGCAGCCTGGTGCGCGGGGACGATGGCGTGCTGCATTGCCAGATGGGCGGTCCTCAgg > 4:102253/1‑148 (MQ=255) ggcCGTGCACTTCGTCGAGGAATCGTTTCTTGACCTGCTGGGCCAGCATCAGGCACGCGGTGTCAACTTCGCCGCCTACCAGGCCCTGCGCAGCCTGGTGCGCGGGGACGATGGCGTGCTGCATTGCCAGATGGGCGGTCCTCAGGCAt < 8:154692/149‑1 (MQ=255) ttCGTCGAGGAATCGTTTCTTGACCTGCTGGGCCAGCATCAGGCACGCGGTGTCAACTTCGCCGCCTACCAGGCCCTGCGCAGCCTGGTGCGCGGGGACGATGGCGTGCTGCATTGCCAGATGGGCGGTCCTCAGGCATACCAAGGTGc > 1:305210/1‑149 (MQ=255) gTTTCTTGACCTGCTGGGCCAGCATCAGGCACGCGGTGTCAACTTCGCCGCCTACCAGGCCCTGCGCAGCCTGGTGCGCGGGGACGATGGCGTGCTGCATTGCCAGATGGGCGGTCCTCAGGCATACCAAGGTGCGTAGTGCGGGTAg < 2:305210/148‑1 (MQ=255) tttCTTGACCTGCTGGGCCAGCATCAGGCACGCGGTGTCAACTTCGCCGCCTACCAGGCCCTGCGCAGCCTGGTGCGCGGGGACGATGGCGTGCTGCATTGCCAGAt < 2:79916/107‑1 (MQ=255) tttCTTGACCTGCTGGGCCAGCATCAGGCACGCGGTGTCAACTTCGCCGCCTACCAGGCCCTGCGCAGCCTGGTGCGCGGGGACGATGGCGTGCTGCATTGCCAGAt > 1:79916/1‑107 (MQ=255) tttCTTGACCTGCTGGGCCAGCATCAGGCACGCGGTGTCAACTTCGCCGCCTACCAGGCCCCGCGCACCAGGCTGCGCaggg < 5:315719/82‑1 (MQ=37) tttCTTGACCTGCTGGGCCAGCATCAGGCACGCGGTGTCAACTTCGCCGCCTACCAGGCCCCGCGCACCAGGCTGCGCaggg > 6:315719/1‑82 (MQ=37) gACCTGCTGGGCCAGCATCAGGCAGGCGGTGTCAACTTCGCCGCCTACCAGGCCCTGCGCAGCCTGGTGCGCGGGGACGATGGCGTGCTGCATTGCCAGATGGGCGGTCCTCAGGCATACCAAGGTGCGTAGTGCGGGTAGCGATCCAg > 5:98729/1‑149 (MQ=255) ctgctgGGCCAGCATCAGGCACGCGGTGTCAACTTCGCCGCCTACCAGGCCCTGCGCAGCCTGGTGCGCGGGGACGATGGCGTGCTGCATTGCCAGATGGGCGGTCCTCAGGCATACCAAGGTGCGTAGTGCGGGTAGCGATCCAGGCg > 6:118534/1‑149 (MQ=255) aCGCGGTGTCAACTTCGCCGCCTACCAGGCCCTGCGCAGCCTGGTGCGCGGGGACGATGGCGTGCTGCATTGCCAGATGGGCGGTCCTCAGGCATACCAAGGTGCGTAGTGCGGGTAGCGATCCAGGCGGGCACCGATGACCATTTCGc < 3:102253/149‑1 (MQ=255) aCTTCGCCGCCTACCAGGCCCTGCGCAGCCTGGTGCGCGGGGACGATGGCGTGCTGCATTGCCAGATGGGCGGTCCTCAGGCATACCAAGGTGCGTAGTGCGGGTAGCGATCCAGGCGGGCACCGATGACCATTTCGCTGATCCATgcc > 4:89283/1‑149 (MQ=255) cTTCGCCGCCTACCAGGCCCTGCGCAGCCTGGTGCGCGGGGACGATGGCGTGCTGCATTGCCAGATGGGCGGTCCTCAGGCATACCAAGGTGCGTAGTGCGGGTAGCGATCCAGGCGGGCACCGATGACCATTTCGCTGATCCATgccg > 3:139960/1‑149 (MQ=255) gccgccTACAAGGCCCTGCGCAGCCTGGAGCGCGGGGACGATCGCGTGCTGCATTGCCAGATGGGCGGTCCTCAGGCATACCAAGGTGCGTAGTGCGGGTAGCGATCCAGGCGGGCACCGATGACCATTTCGCTGATCCATGCCGCCAg > 7:230507/1‑149 (MQ=255) ccTACCAGGCCCTGCGCAGCCTGGTGCGCGGGGACGATGGCGTGCTGCATTGCCAGATGGGCGGTCCTCAGGCATACCAAGGTGCGTAGTGCGGGTAGCGATCCAGGCGGGCACCGATGACCATTTCGCTGATCCATGCCGCCAGgagc < 4:139960/149‑1 (MQ=255) ccAGGCCCTGCGCAGCCTGGTGCGCGGGGACGATGGCGTGCTGCATTGCCAGATGGGCGGTCCTCAGGCATACCAAGGTGCGTAGTGCGGGTAGCGATCCAGGCGGGCACCGATGACCATTTCGCTGATCCATGCCGCCAGgagcga < 8:230507/147‑1 (MQ=255) agCCCTGCGCAGCCTGGTGCGCGGGGACGATGGCGTGCTGCATTGCCAGATGGGCGGTCCTCAGGCATACCAAGGTGCGTAGTGCGGGTAGCGATCCAGGCGGGCACCGATGACCATTTCGCTGATCCATGCCGCCAGGAGCGAGCtat < 5:18721/148‑1 (MQ=255) cTGCGCAGCCTGGTGCGCGGGGACGATGGCGTGCTGCATTGCCAGATGGGCGGTCCTCAGGCATACCAAGGTGCGTAGTGCGGGTAGCGATCCAGGCGGGCACCGATGACCATTTCGCTGATCCATGCCGCCAGGAGCGAGCTATACGc > 1:153202/1‑149 (MQ=255) cgcAGCCTGGTGCGCGGGGACGATGGCGTGCTGCATTGCCAGATGGGCGGTCCTCAGGCATACCAAGGTGCGTAGTGCGGGTAGCGATCCAGGCGGGCACCGATGACCATTTCGCTGATCCATGCCGCCAGGAGCGAGCTATACGCt < 5:118534/147‑1 (MQ=255) gCCTGGTGCGCGGGGACGATGGCGTGCTGCATTGCCAGATGGGCGGTCCTCAGGCATACCAAGGTGCGTAGTGCGGGTAGCGATCCAGGCGGGCACCGATGACCATTTCGCTGATCCATGCCGCCAGGAGCGAGCTATACGCTTTCTgg < 3:89283/149‑1 (MQ=255) ccTGGTGCGCGGGGACGATGGCGTGCTGCATTGCCAGATGGGCGGTCCTCAGGCATACCAAGGTGCGTAGTGCGGGTAGCGATCCAGGCGGGCACCGATGACCATTTCGCTGATCCATGCCGCCAGGAGCGAGCTATACGCTTTCTGGc > 7:125094/1‑149 (MQ=255) | TTGCAGTACCTGCAATGGCAGTCACGCCAGGCCTGGGCTGCGGCGGCCGTGCACTTCGTCGAGGAATCGTTTCTTGACCTGCTGGGCCAGCATCAGGCACGCGGTGTCAACTTCGCCGCCTACCAGGCCCTGCGCAGCCTGGTGCGCGGGGACGATGGCGTGCTGCATTGCCAGATGGGCGGTCCTCAGGCATACCAAGGTGCGTAGTGCGGGTAGCGATCCAGGCGGGCACCGATGACCATTTCGCTGATCCATGCCGCCAGGAGCGAGCTATACGCTTTCTGGC > NC_002947/2542715‑2543000 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |