Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,629,073 | G→T | 7.1% | P10P (CCG→CCT) | clpX → | ATP‑dependent Clp protease ATP‑binding subunit ClpX |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,629,073 | 0 | G | T | 7.1% | 177.4 / 3.6 | 56 | P10P (CCG→CCT) | clpX | ATP‑dependent Clp protease ATP‑binding subunit ClpX |
Reads supporting (aligned to +/- strand): ref base G (24/28); new base T (2/2); total (26/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.60e-01 |
CAGCCGAGTACGGCCTGATCGACTCGGTCTACGACAAGCGGCAACTGGCCTCCTGAACCGGGGGGTCAGAGCAGGTGGGCGTCGAAAGCGCCTACCTGCGGACTTGAAAAAGCCCGCAATTGCCTTCATCTTGTGTTGCAAGCCTACCGGATTGGATCGATCGAATGACTGACACCCGTAACGGCGAGGACAGCGGCAAATTGCTTTATTGCTCCTTCTGCGGCAAAAGCCAGCACGAAGTGCGCAAACTGATTGCCGGGCCCTCGGTATTTATCTGCGACGAGTGCGTCGACC > NC_002947/2628925‑2629218 | cAGCCGAGTACGGCCTGATCGACTCGGTCTACGACAAGCGGCAACTGGCCTCCTGAACCGGGGGGTCAGAGCAGGTGGGCGTCGAAAGCGCCTACCTGCGGACTTGAAAAAGCCCGCAATTGCCTTCATCTTGTGTTGCAAGCCTACCg < 6:272920/149‑1 (MQ=255) cAGCCGAGTACGGCCTGATCGACTCGGTCTACGACAAGCGGCAACTGGCCTCCTGAACCGGGGGGTCAGAGCAGGTGGGCGTCGAAAGCGCCTACCTGCGGACTTGAAAAAGCCCGCAATTGCCTTCATCTTGTGTTGCAAGCCTACCg < 7:48970/149‑1 (MQ=255) aGCCGAGTACGGCCTGATCGACTCGGTCTACGACAAGCGGCAACTGGCCTCCTGAACCGGGGGGTCAGAGCAGGTGGGCGTCGAAAGCGCCTACCTGCGGACTTGAAAAAGCCCGCAATTGCCTTCATCTTGTGTTGCAAGCCTACCg > 2:34562/1‑148 (MQ=255) cGAGTACGGCCTGATCGACTCGGTCTACGACAAGCGGCAACTGGCCTCCTGAACCGGGGGGTCAGAGCAGGTGGGCGTCGAAAGCGCCTACCTGCGGACTTGAAAAAGCCCGCAATTGCCTTCATCTTGTGTTGCAAGCCTACCGGAtt < 6:67954/149‑1 (MQ=255) aCGGCCTGATCGACTCGGTCTACGACAAGCGGCAACTGTCATCCTGAACCGGGGGGTCAGAGCAGGTGGGAGTCGAAAGCTCCTACCTGCGGACTTGAAAAAGCCCGCAAATGCCTTCATCTAGTGTTCCAAGCCGACCGTATTGgaac > 5:203502/1‑147 (MQ=255) tGATCGACTCGGTCTACGACAAGCGGCAACTGGCCTCCTGAACCGGGGGGTCAGAGCAGGTGGGCGTCGAAAGCGCCTACCTGCGGACTTGAAAAAGCCCGCAATTGCCTTCATCTTGTGTTGCAAGCCTACCGGATTGGatcgatcg > 4:170390/1‑148 (MQ=255) atggACTCGGTCTACGACAAGCGGAAACTGGCCTCCTGATCCGGGGTGTCAGAGCAGGTGTGCGTCGAAAGCGCCTACCTGCGGACTTGAAAAAGCCCGCAATTGCCTTCATCTTGTGTTGCAAGCCTACCGGATTGGATCTATCGaa < 6:203502/145‑1 (MQ=255) gACTCGGTCTACGACAAGCGGCAACTGGCCTCCTGAACCGGGGGGGCAGAGCAGGTGGGCGTCGAAAGCGCCTACCTGCGGACTTGAAAAAGCCCGCAATTGCCTTCATCTTGTGTTGCAAGCCTACCGGATTGGATCGATCGAAtgac < 3:201630/149‑1 (MQ=255) gACTCGGTCTACGACAAGCGGAAACTGGCCTCCTGAACCGGGGGGTCAGATCAGGTGGTCGTCGAAAGCGCCTACCTGCGGACTTGAAAAAGCCCTCAATTGCCTTCATCTTGTGTTGCAAGCCTACCGGATTGGATCGATCGAAtgac < 7:141722/149‑1 (MQ=255) aCTCGGTCTACGACAAGCGGCAACTGGCCTCCTGAACCGGGGGGTCAGAGCAGGTGGGCGTCGAAAGCGCCTACCTGCGGACTTGAAAAAGCCCGCAATTGCCTTCATCTTGTGTTGCAAGCCTACCGGATTGGATCGATCGAAtgact < 5:26491/149‑1 (MQ=255) cGACAAGCGGCAACTGGCCTCCTGAACCGGGGGGTCAGAGCAGGTGGGCGTCGAAAGCGCCTACCTGCGGACTTGAAAAAGCCCGCAATTGCCTTCATCTTGTGTTGCAAGCCTACCGGATTGGATCGATCGAATGACTGACACCCGt > 4:53097/1‑148 (MQ=255) gACAAGCGGCAACTGGCCTCCTGAACCGGGGGGTCAGAGCAGGTGGGCGTCGAAAGCGCCTACCTGCGGACTTTAAAAAGCCCGCAATTGCCTTCATCTTGTGTTGCAAGCCTACCGGGTTGGATCGATCGAATGACTGACAACGGTaa > 2:259571/1‑149 (MQ=255) cGGCAACTGGCCTCCTGAACCGGGGGGTCAGAGCAGGTGGGCGTCGAAAGCGCCTACCTGCGGACTTGAAAAAGCCCGCAATTGCCTTCATCTTGTGTTGCAAGCCTACCGGATTGGATCGATCGAATGACTGACACCCGTAACGGc > 7:49229/1‑147 (MQ=255) ggCCTCCTGAACCGGGGGGTCAGAGCAGGTGGGCGTCGAAAGCGCCTACCTGCGGACTTGAAAAAGCCCGCAATTGCCTTCATCTTGTGTTGCAAGCCTACCGGATTGGATCGATCGATTGAGTGACACCCGTAACGGCGAGGACAGCg > 4:212240/1‑149 (MQ=255) ggCCTCCTGAACCGGGGGGTCAGAGCAGGTGGGCGTCGAAAGCGCCTACCTGCGGACTTGAAAAAGCCCGCAATTGCCTTCATCTTGTGTTGCAAGCCTACCGGATTGGATCGATCGAATGACTGACACCCGTAACGGCGAGGACAGCg > 4:238253/1‑149 (MQ=255) ggCCTCCTGAACCGGGGGGTCAGAGCAGGTGGGCGTCGAAAGCGCCTACCTGCGGACTTGAAAAAGCCCGCAATTGCCTTCATCTTGTGTTGCAAGCCTACCGGATTGGATCGATCGAATGACTGACACCCGTAACGGCGAGGACAGCg > 7:87930/1‑149 (MQ=255) ctGAACCGGGGGGTCAGAGCAGGTGGGCGTCGAAAGCGCCTACCTGCGGACTTGAAAAAGCCCGCAATTACCTTCATCTTGTGTTGCAAGCCTACCGGATTGGATCGATCGAATGACTGACACCCGTAACGGCGAGGACAGCGGCaa < 6:199734/147‑1 (MQ=255) gAACCGGGGGGTCAGAGCAGGTGGGCGTCGAAAGCGCCTACCTGCGGACTTGAAAAAGCCCGCAATTGCCTTCATCTTGTGTTGCAAGCCTACCGGATTGGATCGATCGAATGACTGACACCCGTAACGGCGAGGACAGCGGCAAATTg > 3:209685/1‑149 (MQ=255) aaCCGGGGGGTCAGAGCAGGTGGGCGTCGAAAGCGCCTACCTGCGGACTTGAAAAAGCCCGCAATTGCCTTCATCTTGTGTTGCAAGCCTACCGGATTGGATCGATCGAATGACTGACACCCGTAACGGCGAGGACAGCGGCAAATTGc > 1:143725/1‑149 (MQ=255) gggTCAGAGCAGGTGGGCGTCGAAAGCGCCTACCTGCGGACTTGAAAAAGCCCGCAATTGCCTTCATCTTGTGTTGCAAGCCTACCGGATTGGATCGATCGAATGACTGACACCCGTAACGGCGAGGACAGCGGCAAATTGCTTTATTg < 4:209685/149‑1 (MQ=255) gTCAGAGCAGGTGGGCGTCGAAAGCGCCTACCTGCGGACTTGAAAAAGCCCGCAATTGCCTTCATCTTGTGTTGCAAGCCTACCGGATTGGATCGATCGAATGACTGACACCCGTAACGGCGAGGACAGCGGCAAATTGCTTTATTGCt > 2:302313/1‑149 (MQ=255) cAGGTGGGCGTCGAAAGCGCCTACCTGCGGACTTGAAAAAGCCCGCAATTGCCTTCATCTTGTGTTGCAAGCCTACCGGATTGGATCGATCGAATGACTGACACCCGTAACGGCGAGGACAGCGGCAAATTGCTTTATTGCTCCTTCTg > 1:84601/1‑149 (MQ=255) cAGGTGGGCGTCGAAAGCGCCTACCTGCGGACTTGAAAAAGCCCGCAATTGCCTTCATCTTGTGTTGCAAGCCTACCGGATTGGATCGATCGAATGACTGACACCCGTAACGGCGAGGACAGCGGCAAATTGCTTTATTGCTCCTTCTg < 3:103802/149‑1 (MQ=255) cAGGTGGGCGTCGAAAGCGCCTACCTGCGGACTTGAAAAAGCCCGCAATTGCCTTCATCTTGTGTTGCAAGCCTACCGGATTGGATCGATCGAATGACTGACACCCGTAACGGCGAGGACAGCGGCAAATTGCTTTATTGCTCCTTCTg < 3:53097/149‑1 (MQ=255) gtccgCGTCGAAAGCGCCTACCTGCGGACTGCAAAAAGCCCGCAATAGCCTACATCTGGTCTTGCAAGCCTACCGGATTGGATCGATCGAATGACTGACACCCGTACCGGCCAGGACAGCGGCAAAGAGCTTTATTCCTCCTTCTCCgg > 4:67848/5‑149 (MQ=255) tgcgCGTCGAAAGCGGCTACCTGCGGACTTGAAAAAGCGCTGAATTCCCTTCATCTTCATTTGCAAGGCTACCGGCTTGGATCGATCGAATTACTGACACCCTTAACCGCGAGGACAGCGGCAAATTGCTTTATAGCTCCTTCTGCGGc < 2:242835/146‑1 (MQ=255) tCGAAAGCGCCTACCTGCGGACTTGAAAAAGCCCGCAATTGCCTTCATCTTGTGTTGCAAGCCTACCGGATTGGATCGATCGAATGACTGACACCCGTAACGGCGAGGACAGCGGCAAATTGCTTTAtt < 1:54980/129‑1 (MQ=255) tCGAAAGCGCCTACCTGCGGACTTGAAAAAGCCCGCAATTGCCTTCATCTTGTGTTGCAAGCCTACCGGATTGGATCGATCGAATGACTGACACCCGTAACGGCGAGGACAGCGGCAAATTGCTTTAtt > 2:54980/1‑129 (MQ=255) gAAAGCGCCTACCTGCGGACTTGAAAAAGCCCGCAATTGCCTTCATCTTGTGTTGCAAGCCTACCGGATTGGATCGATCGAATGACTGACACCCGTAACGGCGAGGACAGCGGCAAATTGCTTTATTGCTCCTTCTGCGGCAAAAGCCa < 2:84601/149‑1 (MQ=255) aaGCGCCTACCTGCGGACTTGAAAAAGCCCGCAATTGCCTTCATCTTGTGTTGCAAGCCTACCGGATTGGATCGATCGAATGACTGACACCCGTAACGGCGAGGACAGCGGCAAATTGCTTTATTGCTCCTTCTGCGGCAAAAGCCAGc < 3:170390/149‑1 (MQ=255) ccTGCGGACTTGAAAAAGCCCGCAATTGCCTTCATCTTGTGTTGCAAGCCTACCGGATTGGATCGATCGAATGACTGACACCCGTAACGGCGAGGACAGCGGCAAATTGCTTTATTGCTCCTTCTGCGGCAAAAGCCAGCACGAAGt < 5:136852/147‑1 (MQ=255) cTGCGGACTTGAAAAAGCCCGCAATTGCCTTCATCTTGTGTTGCAAGCCTACCGGATTGGATCGATCGAATGACTGACACCCGTAACGGCGAGGACAGCGGCAAATTGCTTTATTGCTc > 7:179377/1‑119 (MQ=255) cTGCGGACTTGAAAAAGCCCGCAATTGCCTTCATCTTGTGTTGCAAGCCTACCGGATTGGATCGATCGAATGACTGACACCCGTAACGGCGAGGACAGCGGCAAATTGCTTTATTGCTc < 8:179377/119‑1 (MQ=255) cTGCGGACTTGAAAAAGCCCGCAATTGCCTTCATCTTGTGTTGCAAGCCTACCGGATTGGATCGATCGAATGACTGACACCCGTAACGGCGAGGACAGCGGCAAATTGCTTTATTGCTCCTTCTGCGGCAAAAGCCAGCACGAAGTgcg > 4:110191/1‑149 (MQ=255) gCGGACTTGAAAAAGCCCGCAATTGCCTTCATCTTGTGTTGCAAGCCTACCGGATTGGATCGATCGAATGACTGACACCCGTAACGGCGAGGACAGCGGCAAATTGCTTTAt < 4:232349/112‑1 (MQ=255) gCGGACTTGAAAAAGCCCGCAATTGCCTTCATCTTGTGTTGCAAGCCTACCGGATTGGATCGATCGAATGACTGACACCCGTAACGGCGAGGACAGCGGCAAATTGCTTTAt > 3:232349/1‑112 (MQ=255) ttGAAAAAGCCCGCAATTGCCTTCATCTTGTGTTGCAAGCCTACCGGATTGGATCGATCGAATGACTGACACCCGTAACGGCGAGGACAGCGGCAAATTGCTTTATTGCTCCTTCTGCGGCAAAAGCCAGCACGAAGTGCGCAAACTGa > 2:117347/1‑149 (MQ=255) gAAAAAGCCCGCAATTGCCTTCATCTTGTGTTGCAAGCCTACCGGATTGGATCGATCGAATGACTGACACCCGTAACGGCGAGGACAGCGGCAAATTGCTTTATTGCTCCTTCTGCGGCAAAAGCCAGCACGAAGTGCGCAAACTGa < 4:240981/147‑1 (MQ=255) gAAAAAGCCCGCAATTGCCTTCATCTTGTGTTGCAAGCCTACCGGATTGGATCGATCGAATGACTGACACCCGTAACGGCGAGGACAGCGGCAAATTGCTTTATTGCTCCTTCTGCGGCAAAAGCCAGCACGAAGTGCGCAAACTGa < 1:302313/147‑1 (MQ=255) aaaaaGCCCGCAATTGCCTTCATCTTGTGTTGCAAGCCTACCGGATTGGATCGATCGAATGACTGACACCCGTAACGGCGAGGACAGCGGCAAATTGCTTTATTGCTCCTTCTGCGGCAAAAGCCAGCACGAAGTGCGCAAACTGAtt < 2:143725/148‑1 (MQ=255) aaaaGCCCGCAATTGCCTTCATCTTGTGTTGCAAGCCTACCGGATTGGATCGATCGAATGACTGACACCCGTAACGGCGAGGACAGCGGCAAATTGCTTTATTGCTCCTTCTGCGGCAAAAGCCAGCACTAAGTGCGCAAACTGATTGc < 8:166001/149‑1 (MQ=255) aGCCCGCATTTGCCTTCATCTTGTGTTTCAAGCCTACCGGCTTGGTTCGATCGAATGACTGACACCCGTAACGGCGAGGAGAGCGGCAAATTGCTTTATTGCTCCTTCTGCGGCTAAAGCCAGCTCGAAGTGCGCAAACTGATTGCCgg < 3:67848/149‑1 (MQ=255) aGCCCGCAATTGCCTTCATCTTGTGTTGCAAGCCTACCGGATTGGATCGATCGAATGACTGACACCCGTAACGGCGAGGACAGCGGCAAATTGCTTTATTGCTCCTTCTGCGGCAAAAGCCAGCACGAAGTGCGCAAACTGATTGCCgg < 8:87930/149‑1 (MQ=255) aTTGCCTTCATCTTGTGTTGCAAGCCTACCGGATTGGATCGATCGAATGACTGACACCCGTAACGGCGAGGACAGCGGCAAATTGCTTTATTGCTCCTTCTGCGGCAAAAGCCAGCACGAAGTGCGCAAACTGATTGCCGGGCCCTCgg < 3:238253/149‑1 (MQ=255) ccTTCATCTTGTGTTGCAAGCCTACCGGATTGGATCGATCGAATGACTGACACCCGTAACGGCGAGGACAGCGGCAAATTGCTTTATTGCTCCTTCTGCGGCAAAAGCCAGCACGAAGTGCGCAAACTGATTGCCGGGCCCTCGGTAt < 8:49229/148‑1 (MQ=255) cTTCATCTTGTGTTGCAAGCCTACCGGATTGGATCGATCGAATGACTGACACCCGTAACGGCGAGGACAGCGGCAAATTGCTTTATTGCTCCTTCTGCGGCAAAAGCCAGCACGAAGTGCGCAAACTGATTGCCGGGCCCTc > 7:77784/1‑142 (MQ=255) cTTCATCTTGTGTTGCAAGCCTACCGGATTGGATCGATCGAATGACTGACACCCGTAACGGCGAGGACAGCGGCAAATTGCTTTATTGCTCCTTCTGCGGCAAAAGCCAGCACGAAGTGCGCAAACTGATTGCCGGGCCCTc < 8:77784/142‑1 (MQ=255) ttCATCTTGTGTTGCAAGCCTACCTGATTGGATCGATCGAATGACTGACACCCGTAACGGCGAGGACAGCGGCAAATTGCTTTATTGCTCCTTCTGCGGCAAAAGCCAGCACGAAGTGCGCAAACTGATTGCCgg < 6:215684/135‑1 (MQ=255) ttCATCTTGTGTTGCAAGCCTACCTGATTGGATCGATCGAATGACTGACACCCGTAACGGCGAGGACAGCGGCAAATTGCTTTATTGCTCCTTCTGCGGCAAAAGCCAGCACGAAGTGCGCAAACTGATTGCCgg < 6:211045/135‑1 (MQ=255) ttCATCTTGTGTTGCAAGCCTACCTGATTGGATCGATCGAATGACTGACACCCGTAACGGCGAGGACAGCGGCAAATTGCTTTATTGCTCCTTCTGCGGCAAAAGCCAGCACGAAGTGCGCAAACTGATTGCCgg > 5:215684/1‑135 (MQ=255) ttCATCTTGTGTTGCAAGCCTACCTGATTGGATCGATCGAATGACTGACACCCGTAACGGCGAGGACAGCGGCAAATTGCTTTATTGCTCCTTCTGCGGCAAAAGCCAGCACGAAGTGCGCAAACTGATTGCCgg > 5:211045/1‑135 (MQ=255) ttCATCTTGTGTTGCAAGCCTACCGGATTGGATCGATCGAATGACTGACACCCGTAACGGCGAGGACAGCGGCAAATTGCTTTATTGCTCCTTCTGCGGCAAAAGCCAGCACGAAGTGCGCAAACTGATTGCCGGGCCCTCGGTATTTa > 1:130872/1‑149 (MQ=255) tCTTGTGTTGCAAGCCTACCGGATTGGATCGATCGAATGACTGACACCCGTAACGGCGAGGACAGCGGCAAATTGCTTTATTGCTCCTTCTGCGGCAAAAGCCAGCACGAAGTGCGCAAACTGATTGCCGGGCCCTCGGTATTTATCTg > 5:39014/1‑149 (MQ=255) tgtgTTGCAAGCCTACCGGATTGGATCGATCGAATGACTGACACCCGTAACGGCGAGGACAGCGGCAAATTGCTTTATTGCTCCTTCTGCGGCAAAAGCCAGCACGAAGTGCGCAAACTGATTGCCGGGCCCTCGGTATTTATCTGcga > 1:57236/1‑149 (MQ=255) tgtTGCAAGCCTACCGGATTGGATCGATCGAATGACTGACACCCGTAACGGCGAGGACAGCGGCAAATTGCTTTATTGCTCCTTCTGCGGCAAAAGCCAGCACGAAGTGCGCAAACTGATTGCCGGGCCCTCGGTATTTATCTGcgac < 6:39014/148‑1 (MQ=255) tgtTGCAAGCCTACCGGATTGGATCGATCGAATGACTGACACCCGTAACGGCGAGGACAGCGGCAAATTGCTTTATTGCTCCTTCTGCGGCAAAAGCCAGCACGAAGTGCGCAAACTGATTGCCGGGCCCTCGGTATTTATCTGcgac < 1:34562/148‑1 (MQ=255) cAAGCCTACCGGATTGGATCGATCGAATGACTGACACCCGTAACGGCGAGGACAGCGGCAAATTGCTTTATTGCTCCTTCTGCGGCAAAAGCCAGCACGAAGTGCGCAAACTGATTGCCGGGCCCTCGGTATTTATCTGCGACGAGTGc < 1:117347/149‑1 (MQ=255) cTACCGGATTGGATCGATCGAATGACTGACACCCGTAACGGCGAGGACAGCGGCAAATTGCTTTATTGCTCCTTCTGCGGCAAAAGCCAGCACGAAGTGCGCAAACTGATTGCCGGGCCCTCGGTATTTATCTGCGACGAGTGCGTCGa > 6:166583/1‑149 (MQ=255) aCCGGATTGGATCGATCGAATGACTGACACCCGTAACGGCGAGGACAGCGGCAAATTGCTTTATTGCTCCTTCTGCGGCAAAAGCCAGCACGAAGTGCGCAAACTGATTGCCGGGCCCTCGGTATTTATCTGCGACGAGTGCGTCGAcc > 6:70838/1‑149 (MQ=255) | CAGCCGAGTACGGCCTGATCGACTCGGTCTACGACAAGCGGCAACTGGCCTCCTGAACCGGGGGGTCAGAGCAGGTGGGCGTCGAAAGCGCCTACCTGCGGACTTGAAAAAGCCCGCAATTGCCTTCATCTTGTGTTGCAAGCCTACCGGATTGGATCGATCGAATGACTGACACCCGTAACGGCGAGGACAGCGGCAAATTGCTTTATTGCTCCTTCTGCGGCAAAAGCCAGCACGAAGTGCGCAAACTGATTGCCGGGCCCTCGGTATTTATCTGCGACGAGTGCGTCGACC > NC_002947/2628925‑2629218 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |