| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,948,090 | C→T | 17.3% | intergenic (+202/+28) | PP_2580 → / ← PP_2581 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,948,090 | 0 | C | T | 17.3% | 49.9 / 4.2 | 25 | intergenic (+202/+28) | PP_2580/PP_2581 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (9/11); new base T (2/2); total (11/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.61e-01 | |||||||||||
CGCATGGCGCGCTCATGGCGGCGCTCCCAATCACGGCGCCGTTCCCAGTCGCGCCGCCGCTCCCAGTCCCGGCGGGCTTGTTCACGCCGCCACTGTTCGCGGCGCCAGTCGCTTCGGTGGTCGTGCCAGCGATCGTCATCATGCGCCAGGAGCGTGGCCGGCTATTCAACGGCCACGCTGGCCACGCTCGACCAAGGGTTGCCGGCTGGCTTCAACGGTGACTGGACGGCCGGTGAAACCGGTTCGGCTGCTTTCATTTGCGTTGCCGATGCCGTGCCCAC > NC_002947/2947957‑2948237 | cgcATGGCGCGCTCATGGCGGCGCTCCCAATCACGGCGCCGTTCCCAGTCGCGCCGCCGCTCCCAGTCCCGGCGGGCTTGTTCACGCCGCCACTGTTCGCGGCGCCAGTCGCTTCGGTGGTCGTGCCAGCGATCGTCATCATGCGCCAg < 7:138075/149‑1 (MQ=255) gcATGGCGCGCTCATGGCGGCGCTCCCAATCACGGCGCCGTTCCCAGTCGCGCCGCCGCTCCCAGTCCCGGCGGGCTTGTTCACGCCGCCACTGTTCGCGGCGCCAGTCGCTTCGGTGGTCGTGCCAGCGATCGtc > 8:225970/1‑136 (MQ=255) gcATGGCGCGCTCATGGCGGCGCTCCCAATCACGGCGCCGTTCCCAGTCGCGCCGCCGCTCCCAGTCCCGGCGGGCTTGTTCACGCCGCCACTGTTCGCGGCGCCAGTCGCTTCGGTGGTCGTGCCAGCGATCGtc < 7:225970/136‑1 (MQ=255) cATGGCGCGCTCATGGCGGCGCTCCCAATCACGGCGCCGTTCCCAGTCGCGCCGCCGCTCCCAGTCCCGGCGGGCTTGTTCACGCCGCCACTGTTCGCGGCGCCAGTCGCTTCGGTGGTCGTGCCAGCGATCGTCATCATGCGCCAGGa < 4:75568/149‑1 (MQ=255) aTGGCGCGCTCATGGCGGCGCTCCCAATCACGGCGCCGTTCCCAGTCGCGCCGCCGCTCCCAGTCCCGGCGGGCTTGTTCACGCCGCCACTGTTCGCGGCGCCAGTCGCTTCGGTGGTCGTGCCAGCGATCGTCATCATGCGCCAGGAg > 4:65041/1‑149 (MQ=255) gcggcgCTCCCAATCACGGCGCCGTTCCCAGTCGCGCCGCCGCTCCCAGTCCCGGCGGGCTTGTTCACGCCGCCACTGTTCGCGGCGCCAGTCGCTTCGGTGGTCGTGCCAGCGATCGTCATCATGCGCCAGGAGCGTGGCCGGCTAt < 8:203143/148‑1 (MQ=255) cgcTCCCAATCACGGCGCCGTTCCCAGTCGCGCCGCCGCTCCCAGTCCCGGCGGGCTTGTTCACGCCGCCACTGTTCGCGGCGCCAGTCGCTTCGGTGGTCGTGCCAGCGATCGTCATCATGCGCCAGGAGCGTGGCCGGCTATTCAAc < 2:232717/149‑1 (MQ=255) ccAATCACGGCGCCGTTCCCAGTCGCGCCGCCGCTCCCAGTCCCGGCGGGCTTGTTCACGCCGCCACTGTTCGCGGCGCCAGTCGCTTCGGTGGTCGTGCCAGCGATCGTCATCATGCGCCa < 3:138208/122‑1 (MQ=255) cGGCGCCGTTCCCAGTCGCGCCGCCGCTCCCAGTCCCGGCGGGCTTGTTCACGCCGCCACTGTTCGCGGCGCCAGTCGCTTCGGTGGTCGTGCCAGCGATCGTCATCATGCGCCAGGAGCGTGGCCGGCTATTCAACggccacgctggc < 5:305722/149‑1 (MQ=255) tCCCAGTCCCGGGGGGCTTGTTCACGCCGCCACTGTTCGGGGCGCCTGGCTCTTCGGTGGTGGTGCCTGCGTTGGTCATCTTGCGCCAGTAGGGTGGCCGGCTATTCAACGGCCACGCTGGCCACGCTCGACCAAGGGTTGCCggctgg < 5:215693/149‑1 (MQ=255) ttGTTCACGCCGCCACTGTTCGCGGCGCCAGTCGCTTCGGTGGTCGTGCCAGCGATCGTCATCATGCGCCAGGAGCGTg < 3:235003/79‑1 (MQ=255) ttGTTCACGCCGCCACTGTTCGCGGCGCCAGTCGCTTCGGTGGTCGTGCCAGCGATCGTCATCATGCGCCAGGAGCGTg > 4:235003/1‑79 (MQ=255) ttGTTCACGCCGCCACTGTTCGCGGCGCCAGTCGCTTCGGTGGTCGTGCCAGCGATCGTCATCATGCGCCAGGAGCGTGGCAGGCTATTCAACGGCCACGCTGGCCACGCTCGACCAAGGGTTGCCGGCTGGCTTCAACGGTGACTGGa > 2:205336/1‑149 (MQ=255) aCGCCGCCACTGTTCGCGGCGCCAGTCGCTTCGGTGGTCGTGCCAGCGATTGTCATCATGCGCCAGGAGCGTGGCCGGCTATTCAACGGCCACGCTGGCCACGCTCGACCAAGGGtt < 5:129506/117‑1 (MQ=255) aCGCCGCCACTGTTCGCGGCGCCAGTCGCTTCGGTGGTCGTGCCAGCGATTGTCATCATGCGCCAGGAGCGTGGCCGGCTATTCAACGGCCACGCTGGCCACGCTCGACCAAGGGtt > 6:129506/1‑117 (MQ=255) aCGCCGCCACTGTTCGCGGCGCCAGTCGCTTCGGTGGTCGTGCCAGCGATTGTCATCATGCGCCAGGAGCGTGGCCGGCTATTCAACGGCCACGCTGGCCACGCTCGACCAAGGGtt > 6:124754/1‑117 (MQ=255) aCGCCGCCACTGTTCGCGGCGCCAGTCGCTTCGGTGGTCGGGCCAGCGATTGGCATCATGCGCCAGGAGCGTGGCCGGCTATTCAACGGCCACGCTGGCCACGCTCGACCAAGGGtt < 5:124754/117‑1 (MQ=255) cACTGTTCGCGGCGCCAGTCGCTGCGGTGGTCGTGCCAGCGATCGTCATCATGCGCCAGGAGCGTGGCCGGCTATTCAACGGCCACGCTGGCCACGCTCGACCAAGGGTTGCCGGCTGGCTTCAACGGTGACTGGACGGCCGGTGAAAc < 6:39494/149‑1 (MQ=255) ttCGCGGCGCCAGTCGCTTCGGTGGTCGTGCCAGCGATCGTCATCATGCGCCAGGAGCGTGGCCGGCTATTCAACGGCCACGCTGGCCACGCTCGACCAAGGGTTGCCGGCTGGCTTCAACGGTGACTGGACGGCCGGTGAAACCGGtt < 3:65041/149‑1 (MQ=255) cgcgGCGCCAGTCGCTTCGGTGGTCGTGCCAGCGATCGTCATCATGCGCCAGGAGCGTGGCCGGCTATTCAACGGCCACGCTGGCCACGCTCGACCAAGGGTTGCCGGCTGGCTTCAACGGTGACTGGACGGCCGGTGAAACCGGt < 7:77/146‑1 (MQ=255) cgcgGCGCCAGTCGCTTCGGTGGTCGTGCCAGCGATCGTCATCATGCGCCAGGAGCGTGGCCGGCTATTCAACGGCCACGCTGGCCACGCTCGACCAAGGGTTGCCGGCTGGCTTCAACGGTGACTGGACGGCCGGTGAAACCGGt > 8:77/1‑146 (MQ=255) cAGTCGCTTCGGTGGTCGTGCCAGCGATCGTCATCATGCGCCAGGAGCGTGGCCGGCTATTCAACGGCCACGCTGGCCACGCTCGACCAAGGGTTGCCGGCTGGCTTCaa > 4:203310/1‑110 (MQ=255) gtggtCGTGCCAGCGATCGTCATCATGCGCCAGGAGCGTGGCCGGCTATTCAACGGCCACGCTGGCCACGCTCGACCAAGGGTTGCCGGCTGGCTTCAACGGTGACTGGACGGCCGGTGAAACCGGTTCGGCTGCTTTCATTTGCGTTg > 2:94762/1‑149 (MQ=255) ggtCGTGCCAGCGATCGTCATCATGCGCCAGGAGCGTGGCCGGCTATTCAACGGCAACGCTGGCCACGCTCGACCAAGGGTTGCCGGCTGGCTTCAACGGTGACTGGACGGCCGGTGAAACCGGTTAGGCTGCTTTCATTTGCGTTGcc > 5:232194/1‑149 (MQ=255) tCGTCATCATGCGCCAGGAGCGTGGCCGGCTATTCAACGGCCACGCTGGCCACGCTCGACCAAGGGTTGCCGGCTGGCTTCAACGGTGACTGGACGGCCGGTGAAACCGGTTCGGCTGCTTTCATTTGCGTTGCCGATGCCGTGCCCAc > 3:70632/1‑149 (MQ=255) | CGCATGGCGCGCTCATGGCGGCGCTCCCAATCACGGCGCCGTTCCCAGTCGCGCCGCCGCTCCCAGTCCCGGCGGGCTTGTTCACGCCGCCACTGTTCGCGGCGCCAGTCGCTTCGGTGGTCGTGCCAGCGATCGTCATCATGCGCCAGGAGCGTGGCCGGCTATTCAACGGCCACGCTGGCCACGCTCGACCAAGGGTTGCCGGCTGGCTTCAACGGTGACTGGACGGCCGGTGAAACCGGTTCGGCTGCTTTCATTTGCGTTGCCGATGCCGTGCCCAC > NC_002947/2947957‑2948237 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |