Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,153,732 | G→C | 7.0% | intergenic (+3/‑65) | PP_2769 → / → PP_2770 | branched‑chain amino acid ABC transporter permease/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,153,732 | 0 | G | C | 7.0% | 176.7 / 4.1 | 57 | intergenic (+3/‑65) | PP_2769/PP_2770 | branched‑chain amino acid ABC transporter permease/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base G (25/28); new base C (2/2); total (27/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.24e-01 |
ATCGATGCCGGGCAGATAGAGAACCTGCAGAAGATTGCCTTCGGCACGCTGATCATCATCTTCCTGATCAAGGAACCGGAGGGCCTGGCGCGCCTCTGGCAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTCGCACCGGGCTTCGCCCGCCTTATGCCACTGCCCACTGATTTGTAAAGGATAACCACGATGTCGACCCGATCCGTCCTCGGCCGCCTGGCGCTGGCCGTAAGCTTAGCTGCCGGCGCACTCAACGTGCACGCGGCCAACGAA > NC_002947/3153586‑3153880 | aTCGATGCCGGGCAGATAGAGAACCTGCAGAAGATTGCCTTCGGCACGCTGATCATCATCTTCCTGATCAAGGAACCGGAGGGCCTGGCGCGCCTCTGGCAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCGa < 8:195115/148‑1 (MQ=255) tGCCGGGCAGATAGAGAACCTGCAGAAGATTGCCTTCGGCACGCTGATCATCATCTTCCTGATCAAGGAACCGGAGGGCCTGGCGCGCCTCTGGCAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTc < 5:181442/149‑1 (MQ=255) ccGGGCAGATAGAGAACCTGCAGAAGATTGCCTTCGGCACGCTGATCATCATCTTCCTGATCAAGGAACCGGAGGGCCTGGCGCGCCTCTGGCAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTCg < 7:11440/148‑1 (MQ=255) tAGAGAACCTGCAGAAGATTGCCTTCGGCACGCTGATCATCATCTTCCTGATCAAGGAACCGGAGGGCCTGGCGCGCCTCTGGCAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTCGCACCGGGCtt > 1:111146/1‑149 (MQ=255) tAGAGAACCTGCAGAAGATTGCCTTCGGCACGCTGATCATCATCTTCCTGATCAAGGAACCGGAGGGCCTGGCGCGCCTCTGGCAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTCGCACCGGGCtt > 1:62169/1‑149 (MQ=255) gagaACCTGCAGAAGATTGCCTTCGGCACGCTGATCATCATCTTCCTGATCAAGGAACCGGAGGGCCTGGCGCGCCTCTGGCAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTCGCACCGGGCTTcg < 7:251988/149‑1 (MQ=255) gaACCTGCAGAAGATTGCCTTCGGCACGCTGATCATCATCTTCCTGATCAAGGAACCGGAGGGCCTGGCGCGCCTCTGGCAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTCGCACCGGGCTTcgc < 6:254309/148‑1 (MQ=255) aaCCTGCAGAAGATTGCCTTCGGCACGCTGATCATCATCTTCCTGATCAAGGAACCGGAGGGCCTGGCGCGCCTCTGGCAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTCGCACCGGGCTTcgccc > 3:143210/1‑149 (MQ=255) aCCTGCAGAAGATTGCCTTCGGCACGCTGATCATCATCTTCCTGATCAAGGAACCGGAGGGCCTGGCGCGCCTCTGGCAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTCGCACCGGGCTTcgcccg > 5:111625/1‑149 (MQ=255) ccTGCAGAAGATTGCCTTCGGCACGCTGATCATCATCTTCCTGATCAAGGAACCGGAGGGCCTGGCGCGCCTCTGGCAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTCGCACCGGGCTTcgcccgc < 2:199268/149‑1 (MQ=255) agaagaTTGCCTTCGGCACGCTGATCATCATCTTCCTGATCAAGGAACCGGAGGGCCTGGCGCGCCTCTGGCAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTCGCACCGGGCTTCGCCCGCCTTAt < 4:70016/149‑1 (MQ=255) gaagaTTGCCTTCGGCACGCTGATCATCATCTTCCTGATCAAGGAACCGGAGGGCCTGGCGCGCCTCTGGCAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTCGCACCGGGCTTcgc < 8:117043/139‑1 (MQ=255) gaagaTTGCCTTCGGCACGCTGATCATCATCTTCCTGATCAAGGAACCGGAGGGCCTGGCGCGCCTCTGGCAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTCGCACCGGGCTTcgc > 7:117043/1‑139 (MQ=255) cGGCACGCTGATCATCATCTTCCTGATCAAGGAACCGGAGGGCCTGGCGCGCCTCTGGCAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTCGCACCGGGCTTCGCCCGCCTTATGCCACTGCCCa < 6:88842/147‑1 (MQ=255) gCACGCTGATCATCATCTTCCTGATCAAGGAACCGGAGGGCCTGGCGCGCCTCTGGCAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTCGCACCGGGCTTCGCCCGCCTTATGCCACTGcc > 3:166457/1‑143 (MQ=255) gCACGCTGATCATCATCTTCCTGATCAAGGAACCGGAGGGCCTGGCGCGCCTCTGGCAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTCGCACCGGGCTTCGCCCGCCTTATGCCACTGcc < 4:166457/143‑1 (MQ=255) cGCTGATCATCATCTTCCTGATCAAGGAACCGGAGGGCCTGGCGCGCCTCTGGCAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTCGCACCGGGCTTCGCCCGCCTTATGCCACTGCCCACTGAttt < 2:62169/149‑1 (MQ=255) cTGATCATCATCTTCCTGATCAAGGAACCGGAGGGCCTGGCGCGCCTCTGGCAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTCGCACCGGGCTTCGCCCGCCTTATGCCACTGCCCACTGATTTGt < 3:281242/149‑1 (MQ=255) tGATCATCATCTTCCTGATCAAGGAACCGGAGGGCCTGGCGCGCCTCTGGCAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTCGCACCGGGCTTCGCCCGCCTTATGCCACTGCCCACTGATTTGt > 7:250633/1‑148 (MQ=255) tGATCATCATCTTCCTGATCAAGGAACCGGAGGGCCTGGCGCGCCTCTGGCAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTCGCACCGGGCTTCGCCCGCATTATGCACCTGCCCACTGATTTGt > 8:214346/1‑148 (MQ=255) atcatcatcTTCCTGATCAAGGAACCGGAGGGCCTGGCGCGCCTCTGGCAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTCGCACCGGGCTTCGCCCGCCTTATGCCACTGCCCACTGATTTGTaaa < 7:131828/149‑1 (MQ=255) atcatcatcTTCCTGATCAAGGAACCGGAGGGCCTGGCGCGCCTCTGGCAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTCGCACCGGGCTTCGCCCGCCTTATGCCACTGCCCACTGATTTGTaaa < 6:111625/149‑1 (MQ=255) atcatcTTCCTGATCAAGGAACCCGAGGGCCTGGCGCGCCTCTGGCAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTCGCACCGGGCTTCGCCCGCCTTATGCCACTGCCCACTGATTTGTAAAGGa > 8:19529/1‑149 (MQ=255) tcatcTTCCTGATCAAGGAACCGGAGGGCCTGGCGCGCCTCTGGCAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTCGCACCGGGCTTCGCCCGCCTTATGCCACTGCCCACTGATTTGTAAAGGAt < 7:19529/149‑1 (MQ=255) ttCCTGATCAAGGAACCGGAGGGCCTGGCGCGCCTCTGGCAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTCGCACCGGGCTTCGCCCGCCTTATGCCACTGCCCACTGATTTGTAAAGGa > 1:223537/1‑143 (MQ=255) ttCCTGATCAAGGAACCGGAGGGCCTGGCGCGCCTCTGGCAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTCGCACCGGGCTTCGCCCGCCTTATGCCACTGCCCACTGATTTGTAAAGGa < 2:223537/143‑1 (MQ=255) ttCCTGATCAAGGAACCGGAGGGCCTGGCGCGCCTCTGGCAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCCAACCTTCGCACCGGGCTTCGCCCGCCTTATGCCACTGCCCACTGATTTGTAAAGGATAACCa > 6:135987/1‑149 (MQ=255) ttCCTGATCAAGGAACCGGAGGGCCTGGCGCGCCTCTGGCAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCCAACCTTCGCACCGGGCTTCGCCCGCCTTATGCCACTGCCCACTGATTTGTAAAGGATAACCa > 6:131161/1‑149 (MQ=255) tCCTGATCAAGGAACCGGAGGGCCTGGCGCGCCTCTGGCAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTCGCACCGGGCTTCGCCCGCCTTATGCCACTGCCCACTGATTTGTAAAGGATAACCAc > 8:255432/1‑149 (MQ=255) gATCAAGGAACCGGAGGGCCTGGCGCGCCTCTGGCAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTCGCACCGGGCTTCGCCCGCCTTATGCCACTGCCCACTGATTTGTAAAg > 5:212397/1‑136 (MQ=255) gATCAAGGAACCGGAGGGCCTGGCGCGCCTCTGGCAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTCGCACCGGGCTTCGCCCGCCTTATGCCACTGCCCACTGATTTGTAAAg < 6:212397/136‑1 (MQ=255) tCAAGGAACCGGAGGGCCTGGCGCGCCTCTGGCAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTCGCACCGGGCTTCGCCCGCCTTATGCCACTGCCCACTGATTTg < 8:228290/129‑1 (MQ=255) tCAAGGAACCGGAGGGCCTGGCGCGCCTCTGGCAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTCGCACCGGGCTTCGCCCGCCTTATGCCACTGCCCACTGATTTg > 7:228290/1‑129 (MQ=255) cAAGGAACCGGAGGGCCTGGCGCGCCTCTGGCAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTCGCACCGGGCTTCGCCCGCCTTATGCCACTGCCCACTGATTTGTAAAGGATAACCACGATGTc > 5:118293/1‑148 (MQ=255) aaGGAACCGGAGGGCCTGGCGCGCCTCTGGCAACGCTTTCGCGAGCTCGCTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTCGCACCGGGCTTCGCCCGCCTTATGCCACTGCCCACTGATTTGTAAAGGATAACCACGATGTCGa < 4:298192/149‑1 (MQ=255) aGGAACCGGAGGGCCTGGCGCGCCTCTGGCAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTCGCACCGGGCTTCGCCCGCCTTATGCCACTGCCCAc < 3:307166/119‑1 (MQ=255) aGGAACCGGAGGGCCTGGCGCGCCTCTGGCAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTCGCACCGGGCTTCGCCCGCCTTATGCCACTGCCCAc > 4:307166/1‑119 (MQ=255) aGGAACCGGAGGGCCTGGCGCGCCTCTGGCAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTCGCACCGGGCTTCGCCCGCCTTATGCCACTGCCCACTGATTTGTAAAGGATAACCACGATGTCGAc < 6:118293/149‑1 (MQ=255) aGGAACCGGAGGGCCTGGCGCGCCTCTGGCAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTCGCACCGGGCTTCGCCCGCCTTATGCCACTGCCCACTGATTTGTAAAGGATAACCACGATGTCGAc > 8:60377/1‑149 (MQ=255) aGGAACCGGAGGGCCTGGCGCGCCTCTGGCAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTCGCACCGGGCTTCGCCCGCCTTATGCCACTGCCCACTGATTTGTAAAGGATAACCACGATGTCGAc > 6:57514/1‑149 (MQ=255) ggAACCGGAGGGCCTGGCGCGCCTCTGGCAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTCGCACCGGGCTTCGCCCGCCTTATGCCACTGCCCACTGATTTGTAAAGGATAACCACGATGTCGAcc > 2:150310/1‑149 (MQ=255) gAACCGGAGGGCCTGGCGCGCCTCTGGCAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCCAACCTTCGCACCGGGCTTCGCCCGCCTTATGCCACTGCCCACTGATTTGTAAAGGATAACCACGATGTCGAccc < 5:131161/149‑1 (MQ=255) gAACCGGAGGGCCTGGCGCGCCTCTGGCAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCCAACCTTCGCACCGGGCTTCGCCCGCCTTATGCCACTGCCCACTGATTTGTAAAGGATAACCACGATGTCGAccc < 5:135987/149‑1 (MQ=255) ctctGGCAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTCGCACCGGGCTTCGCCCGCCTTATGCCACTGCCCACTGATTTGTAAAGGATAACCACGATGTCGACCCGATCCGTCCTCGGCCGCCTgg > 7:76022/1‑149 (MQ=255) tGGCAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTCGCACCGGGCTTCGCCCGCCTTATGCCACTGCCCACTGATTTGTAAAGGATAACCACGATGTCGACCCGATCCGTCCTCGGCCGCCTGgc < 4:143210/147‑1 (MQ=255) cAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTCGCACCGGGCTTCGCCCGCCTTATGCCACTGCCCACTGATTTGTAAAGGATAACCACGATGTCGACCCGATCCGTCCTCGGCCGCCTGGCGCTgg > 2:171390/1‑149 (MQ=255) aaCGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTCGCACCGGGCTTCGCCCGCCTTATGCCACTGCCCACTGATTTGTAAAGGATAACCACGATGTCGACCCGATCCGTCCTCGGCCGCCTGGCGCTGGc > 8:283304/1‑149 (MQ=255) tCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTCGCACCGGGCTTCGCCCGCCTTATGCCACTGCCCACTGATTTGTAAAGGATAACCACGATGTCGACCCGATCCGTCCTCGGCCGCCTGGCGCTGGCCGTaa < 8:250633/147‑1 (MQ=255) gcgcgcTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTCGCACCGGGCTTCGCCCGCCTTATGCCACTGCCCACTGATTTGTAAAGGATAACCACGATGTCGACCCGATCCGTCCTCGGCCGCCTGGCGCTGGCCGTAAGCTTAGCt < 7:283304/149‑1 (MQ=255) cgcgcTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTCGCACCGGGCTTCGCCCGCCTTATGCCACTGCCCACTGATTTGTAAAGGATAACCACGATGTCGACCCGATCCGTCCTCGGCCGCCTGGCGCTGGCCGTAAGCTTAGCTg < 7:60377/149‑1 (MQ=255) gCCGTTGCGCTACTGAGCGAACCTTCGCACCGGGCTTCGCCCGCCTTATGCCACTGCCCACTGATTTGTAAAGGATAACCACGATGTCGACCCGATCCGTCCTCGGCCGCCTGGCGCTGGCCGTAAGCTTAGCTGCCGGCGCACTCAAc > 2:226666/1‑149 (MQ=255) ccGTTGCGCTACTGAGCGAACCTTCGCACCGGGCTTCGCCCGCCTTATGCCACTGCCCACTGATTTGTAAAGGATAACCACGATGTCGACCCGATCCGTCCTCGGCCGCCTGGCGCTGGCCGTAAGCTTAGCTGCCGGCGCACTCAACg > 5:131648/1‑149 (MQ=255) gTTGCGCGACTGCGCGATCCTACGCACCGGGCTTCGCCCGCCTTATGCCACTGCCCACTGCTTTGTATAGGATAACCACGATGTCGACCCGATCCGTCCTCGGCCGCCTGGCGCTGGCCGTAAGCTTAGCTGCCGGCGCACTCAACGTg < 4:71219/149‑1 (MQ=255) tACTGAGCGAACCTTCGCACCGGGCTTCGCCCGCCTTATGCCACTGCCCACTGATTTGTAAAGGATAACCACGATGTCGACCCGATCCGTCCTCGGCCGCCTGGCGCTGGCCGTAAGCTTAGCTGCCGGCGCACTCAACGTGCACGCgg > 4:74904/1‑149 (MQ=255) cTGAGCGAACCTTCGCACCGGGCTTCGCCCGCCTTATGCCACTGCCCACTGATTTGTAAAGGATAACCACGATGTCGACCCGATCCGTCCTCGGCCGCCTGGCGCTGGCCGTAAGCTTAGCTGCCGGCGCACTCAACGTGCACGCgg < 8:76022/147‑1 (MQ=255) aGCGAACCTTCGCACCGGGCTTCGCCCGCCTTATGCCACTGCCCACTGATTTGTAAAGGATAACCACGATGTCGACCCGATCCGTCCTCGGCCGCCTGGCGCTGGCCGTAAGCTTAGCTGCCGGCGCACTCAACGTGCACGCGGCCAAc < 6:131648/149‑1 (MQ=255) cGAACCTTCGCACCGGGCTTCGCCCGCCTTATGCCACTGCCCACTGATTTGTAAAGGATAACCACGATGTCGACCCGATCCGTCCTCGGCCGCCTGGCGCTGGCCGTAAGCTTAGCTGCCGGCGCACTCAACGTGCACGCGGCCAACg > 2:233703/1‑148 (MQ=255) gAACCTTCGCACCGGGCTTCGCCCGCCTTATGCCACTGCCCACTGATTTGTAAAGGATAACCACGATGTCGACCCGATCCGTCCTCGGCCGCCTGGCGCTGGCCGTAAGCTTAGCTGCCGGCGCACTCAACGTGCACGCGGCCAACGaa < 1:171390/149‑1 (MQ=255) | ATCGATGCCGGGCAGATAGAGAACCTGCAGAAGATTGCCTTCGGCACGCTGATCATCATCTTCCTGATCAAGGAACCGGAGGGCCTGGCGCGCCTCTGGCAACGCTTTCGCGAGCGCGCTCGGCGTTGGCCGTTGCGCTACTGAGCGAACCTTCGCACCGGGCTTCGCCCGCCTTATGCCACTGCCCACTGATTTGTAAAGGATAACCACGATGTCGACCCGATCCGTCCTCGGCCGCCTGGCGCTGGCCGTAAGCTTAGCTGCCGGCGCACTCAACGTGCACGCGGCCAACGAA > NC_002947/3153586‑3153880 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |