Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,214,295 | C→T | 6.5% | N70N (AAC→AAT) | mexD → | multidrug RND transporter MexD |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,214,295 | 0 | C | T | 6.5% | 179.5 / 2.1 | 61 | N70N (AAC→AAT) | mexD | multidrug RND transporter MexD |
Reads supporting (aligned to +/- strand): ref base C (27/30); new base T (2/2); total (29/32) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.63e-01 |
GCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAGTGATGGTGACCTTCGAGCCAGGCACCGACCCGGACATGGCGCAGGTCGACGTGCAGAACCGTTTGAAACAGGCCGAGGCACGCATGC > NC_002947/3214149‑3214440 | gCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACgg > 7:111995/1‑149 (MQ=255) tGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCaa < 6:177682/148‑1 (MQ=255) gTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCct > 3:73912/1‑149 (MQ=255) tGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCctg < 2:163951/149‑1 (MQ=255) tGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCctg < 7:269930/149‑1 (MQ=255) ttCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCctgctg < 5:287053/149‑1 (MQ=255) ttCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCctgctg > 3:12785/1‑149 (MQ=255) ttCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCctgctg < 4:73912/149‑1 (MQ=255) cATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGTCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAATGGCGCCAAGGGCCTGCTGtac > 4:103846/1‑149 (MQ=255) cATCCTTGCCCGTGGCCCAGTACCCCAACCTGGCGCCACCCCAGATCTCCATCACCGTCACCTACCCCGGCCCTTCGGCCAAGGACATGCTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAATCCCGCCAAGGGCCAGCTGta > 4:108378/1‑148 (MQ=255) tCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGtacta > 3:180342/1‑149 (MQ=255) gCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGa < 1:141036/147‑1 (MQ=255) cccGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTc < 7:107773/149‑1 (MQ=255) cGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTcca < 8:111995/149‑1 (MQ=255) cccAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACcaa > 4:282449/1‑148 (MQ=255) aGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTccacc < 8:182203/143‑1 (MQ=255) aGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATAATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTccacc > 7:182203/1‑143 (MQ=255) cccAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCaa > 7:175113/1‑149 (MQ=255) cccAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCaa > 3:130532/1‑149 (MQ=255) ccAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAAc > 6:77559/1‑149 (MQ=255) ccAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAAc < 6:308220/149‑1 (MQ=255) gcCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGcc > 7:98986/1‑148 (MQ=255) cACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGaa < 5:77559/149‑1 (MQ=255) aCCGCAGATCTCCATCACCGTCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAATGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAg < 3:103846/149‑1 (MQ=255) aCCGCAGATCTCCATCACCGTCTCCTACCCCGGCGCTTCGGCCAACGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTGGCTCAATGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAg < 3:108378/149‑1 (MQ=255) aCCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCaacaac > 1:12626/1‑130 (MQ=255) aCCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCaacaac < 2:12626/130‑1 (MQ=255) aCCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAg < 3:205627/149‑1 (MQ=255) aCCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAg > 5:158411/1‑149 (MQ=255) aGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAGTGATg < 6:130814/149‑1 (MQ=255) tcCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAGTGATGGTGAc > 8:163663/1‑149 (MQ=255) ccATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGt < 5:4784/130‑1 (MQ=255) ccATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAGTGATGGTGAcc > 6:254546/1‑149 (MQ=255) ccATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCCAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCAAACCGcct > 6:4784/1‑128 (MQ=255) cGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAGTGATGGTGACCTTCGAGc < 8:98986/149‑1 (MQ=255) ctcctACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAGTGATGGTGACCTTCGAGCCAg < 4:130532/149‑1 (MQ=255) aCCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTcc > 8:168906/1‑107 (MQ=255) ccccGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAGTGATGGTGACCTTCGAGCCAGGCAc < 4:12785/147‑1 (MQ=255) cgaggCGCTTAGGCCAAGGTAATGTTGTAGTAGGTGAACATCATCATCTAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAGTGATTGTGACCTTCGAGCCAGGCACCGa < 2:120796/146‑1 (MQ=255) ggCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAGTGATGGTGACCTTCGAGCCAGGCACCGAccc < 8:175113/149‑1 (MQ=255) cGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAGTGATGGTGACCTTCGAGCCAGGCACCGACCCGGACAt < 4:180342/148‑1 (MQ=255) ccAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAGTGATGGTGACCTTCGAGCCAGGCACCGACCCGGACATg > 5:223720/1‑146 (MQ=255) ccAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAGTGATGGTGACCTTCGAGCCAGGCACCGACCCGGACATg < 6:223720/146‑1 (MQ=255) cAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGaa < 1:131822/106‑1 (MQ=255) cAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGaa > 2:131822/1‑106 (MQ=255) aTGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAGTGATGGTGACCTTCGAGCCAGGCACCGACCCGGACATGGCGCAGGTCg < 6:158411/148‑1 (MQ=255) gAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAGTGATGGTGACCTTCGAGCCAGGCACCGACCCGGACATGGCGCAGGTCGACGTg > 4:284131/1‑147 (MQ=255) aCCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAGTGATGGTGACCTTCGAGCCAGGCACCGACCCGGACATGGCGCAGGTCGACGTGCAGAACCGttt < 4:270550/149‑1 (MQ=255) cAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAGTGATGGTGACCTTCGAGCCAGGCACCGACCCGGACATGGCGCAGGTCGACGTGCAGAACCGTTTg > 1:311581/1‑148 (MQ=255) atcatcGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAGTGATGGTGACCTTCGAGCCAGGCACCGACCCGGACATGGCGCAGGTCGACGTGCAGAACCGTTTGAAACa < 3:282449/149‑1 (MQ=255) atcGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAGTGATGGTGACCTTCGAGCCAGGCACCGACCCGGACATGGCGCAGGTCGACGTGCAGAACCGTTTGAAACAGGc > 1:52500/1‑149 (MQ=255) gAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAGTGATGGTGACCTTCGAGCCAGGCACCGACCCGGACATGGCGCAGGTCGACGTGCAGAACCGTTTGAAACAGGCCGa < 2:311581/149‑1 (MQ=255) aaCAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAGTGATGGTGACCTTCGAGCCAGGCACCGACCCGGACATGGCGCAGGTCGACGTGCAGAACCGTTTGAAACAGGCCGAg < 5:254546/149‑1 (MQ=255) tCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAGTGATGGTGACCTTCGAGCCAGGCACCGACCCGGACATGGCGCAGGTCGa > 7:135635/1‑116 (MQ=255) tCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAGTGATGGTGACCTTCGAGCCAGGCACCGACCCGGACATGGCGCAGGTCGa < 8:135635/116‑1 (MQ=255) gCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCACCGGCGTGGCCGAAGTGATGGTGACCTTCGAGCCAGGCACCGACCCGGACATGGCGCAGGTCGACGTGCAGAACCGTGAGAAACAGGCCGAGGCACGCa > 8:232148/1‑149 (MQ=255) gCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAGTGATGGTGACCTTCGAGCCAGGCACCGACCCGGACATGGCGCAGGTCGACGTGCAGAACCGTTTGAAACAGGCCGAGGCACGCa > 2:53343/1‑149 (MQ=255) cTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAGTGATGGTGACCTTCGAGCCAGGCACCGACCCGGACATGGCGCAGGTCGACGTGCAGAACCGTTTGAAACAGGCCGAGGCACGCAt < 7:163663/149‑1 (MQ=255) cTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAGTGATGGTGACCTTCGAGCCAGGCACCGACCCGGACATGGCGCAGGTCGACGTGCAGAACCGTTTGAAACAGGCCGAGGCACGCAt > 2:285529/1‑149 (MQ=255) tCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAGTGATGGTGACCTTCGAGCCAGGCACCGACCCGGACATGGCGCAGGTCGACGCGCAGAACCGTTTGAAACAGGCCGAGGCACGCATg > 1:16474/1‑149 (MQ=255) aaCGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAGTGATGGTGACCTTCGAGCCAGGCACCGACCCGGACATGGCGCAGGTCGACGTGCAGAACCGTTTGAAACAGGCCGAGGCACGCATGc > 6:34699/1‑148 (MQ=255) | GCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAACAGTCGCTCAACGGCGCCAAGGGCCTGCTGTACTACGAGTCCACCAACAACTCCAACGGCGTGGCCGAAGTGATGGTGACCTTCGAGCCAGGCACCGACCCGGACATGGCGCAGGTCGACGTGCAGAACCGTTTGAAACAGGCCGAGGCACGCATGC > NC_002947/3214149‑3214440 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |