Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,589,518 | G→A | 7.1% | L13L (CTG→CTA) | nicP‑I → | porin‑like protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,589,518 | 0 | G | A | 7.1% | 164.0 / 2.7 | 57 | L13L (CTG→CTA) | nicP‑I | porin‑like protein |
Reads supporting (aligned to +/- strand): ref base G (24/28); new base A (2/2); total (26/31) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.57e-01 |
CGCTGCTGAGGCTGCGCCAGCCACGTGCCCGGGAGGTGCTGCGCCGTACCCCATGAACTGCCGTGTTCCCAACGCTTTACCCATAAAAACAAGATCAAGAGAGCTTCGGAATGAACCACACCCCTTGCGTTGCCCTGGGCCTGACACTGCTCAGCCAGCCACTGCTGGCTGCCGAAGGCGGCTTCTTCGAG‑GACTCGAAGGCCACCCTGAGTGCCCGTAACTACTACTTCAGCCGCGATTTTTCCGACATTGTCGGGGCCAACAAACAGTCCAAGGCCGAGGAGTGGGCCCAGGGTT > NC_002947/3589370‑3589666 | cgcTGCTGAGGCTGCGCCAGCCACGTGCCCGGGAGGTGCTGCGCCGTACCCCATGAACTGCCGTGTTCCCAACGCTTTACCCATAAAAACAAGATCAAGAGAGCTTCGGAATGAACCACACCCCTTGCGTTGCCCTGGGCCTGACACTg < 7:9605/149‑1 (MQ=255) tgctgAGGCTGCGCCAGCCACGTGCCCGGGAGGTGCTGCGCCGTACCCCATGAACTGCCGTGTTCCCAACGCTTTACCCATAAAAACAAGATCAAGAGAGCTTCGGAATGAACCACACCCCTTGCGTTGCCCTGGGCCTGACACTGCt > 4:15391/1‑148 (MQ=255) ctgAGGCTGCGCCAGCCACGTGCCCGGGAGGTGCTGCGCCGTACCCCATGAACTGCCGTGTTCCCAACGCTTTACCCATAAAAACAAGATCAAGAGAGCTTCGGAATGAACCACACCCCTTGCGTTGCCCTGGGCCTGACACTACTcag > 5:269044/1‑149 (MQ=255) cagccaCGTGCCCGGGAGGTGCTGCGCCGTACCCCATGAACTGCCGTGTTCCCAACGCTTTACCCATAAAAACAAGATCAAGAGAGCTTCGGAATGAACCACACCCCTTGCGTTGCCCTGGGCCTGACACTACTCAGCCAGCCActgct > 6:275676/1‑149 (MQ=255) agccaCGTGCCCGGGAGGTGCTGCGCCGTACCCCATGAACTGCCGTGTTCCCAACGCTTTACCCATAAAAACAAGATCAAGAGAGCTTCGGAATGAACCACACCCCTTGCGTTGCCCTGGGCCTGACACTGCTCAGCCAGCCActgctg < 1:41014/149‑1 (MQ=255) gccaCGTGCCCGGGAGGTGCTGCGCCGTACCCCATGAACTGCCGTGTTCCCAACGCTTTACCCATAAAAACAAGATCAAGAGAGCTTCGGAATGAACCACACCCCTTGCGTTGCCCTGGGCCTGACACTGCTCAGCCAGCCACTgctgg < 6:56380/149‑1 (MQ=255) ccaCGTGCCCGGGAGGTGCTGCGCCGTACCCCATGAACTGCCGTGTTCCCAACGCTTTACCCGTAAAAACAAGATCAAGAGAGCTTCGGAATGAACCACACCCCTTGCGTTGCCCTGGGCCTGACACTGCTCAGCCAGCCACTgctggc > 1:292249/1‑149 (MQ=255) tGCCCGGGAGGTGCTGCGCCGTACCCCATGAACTGCCGTGTTCCCAACGCTTTACCCATAAAAACAAGATCAAGAGAGCTTCGGAATGAACCACACCCCTTGCGTTGCCCTGGGCCTGACACTGCTCAGCCAGCCACTGCTGGCTGcc > 8:133890/1‑148 (MQ=255) tGCCCGGGAGGTGCTGCGCCGTACCCCATGAACTGCCGTGTTCCCAACGCTTTACCCATAAAAACAAGATCAAGAGAGCTTCGGAATGAACCACACCCCTTGCGTTGCCCTGGGCCTGACACTGCTCAGCCAGCCACTGCTGGCTGcc < 7:133890/148‑1 (MQ=255) ccGGGAGGTGCTGCGCCGTACCCCATGAACTGCCGTGTTCCCAACGCTTTACCCATAAAAACAAGATCAAGAGAGCTTCGGAATGAACCACACCCCTTGCGTTGCCCTGGGCCTGACACTGCTCAGCCAGCCACTGCTGGCTGCCGAAg < 4:155195/149‑1 (MQ=255) gggAGGTGCTGCGCCGTACCCCATGAACTGCCGTGTTCCCAACGCTTTACCCATAAAAACAAGATCAAGAGAGCTTCGGAATGAACCACACCCCTTGCGTTGCCCTGGGCCTGACACTACTCAGCCAGCCACTGCTGGCTGCCGAAggc < 6:269044/149‑1 (MQ=255) aGGTGCTGCGCCGTACCCCATGAACTGCCGTGTTCCCAACGCTTTACCCATAAAAACAAGATCAAGAGAGCTTCGGAATGAACCACACCCCTTGCGTTGCCCTGGGCCTGACGCTGCTCAGCCAGCCACTGCTGGCTGCCGAAggcggc < 4:71018/149‑1 (MQ=255) tgcGCCGTACCCCATGAACTGCCGTGTTCCCAACGCTTTACCCATAAAAACAAGATCAAGAGAGCTTCGGAATGAACCACACCCCTTGCGTTGCCATGGGCCTGACACTGCTCAGCCAGCCACTGCTGGATGCCGAAGGCGGCttcttc > 3:103441/1‑149 (MQ=255) cccATGAACTGCCGTGTTCCCAACGCTTTACCCATAAAAACAAGATCAAGAGAGCTTCGGAATGAACCACACCCCTTGCGTTGCCCTGGGCCTGACACTGCTCAGCCAGCCActg > 2:176909/1‑115 (MQ=255) cccATGAACTGCCGTGTTCCCAACGCTTTACCCATAAAAACAAGATCAAGAGAGCTTCGGAATGAACCACACCCCTTGCGTTGCCCTGGGCCTGACACTGCTCAGCCAGCCACTGCTGGCTGCCGAAGGCGGCTTCTTCGAG‑GACTCg > 2:127592/1‑148 (MQ=255) cccATGAACTGCCGTGTTCCCAACGCTTTACCCATAAAAACAAGATCAAGAGAGCTTCGGAATGAACCACACCCCTTGCGTTGCCCAGGGCCTGACACTGCTCAGCCAGCCActg < 1:176909/115‑1 (MQ=255) cATGAACTGCCGTGTTCCCAACGCTTTACCCATAAAAACAAGATCAAGAGAGCTTCGGAATGAACCACACCCCTTGCGTTGCCCTGGGCCTGACACTACTCAGCCAGCCACTGCTGGCTGCCGAAGGCGGCTTCTTCGAG‑GACTCGAAg < 5:275676/149‑1 (MQ=255) cATGAACTGCCGGGTTCCCACCGCTTACCCCATAAAACCACGATCAACAGACCTTCTGCATGAACCACACCCCTTGCGTTGCCCTGGGCCTGACACTGCTCAGCCAGCCACTGCTGGCTGCCGAAGGCGGCTTCTTCGAG‑GACTCGAAg < 8:101621/149‑1 (MQ=255) aTGAACTGCCGTGTTCCCAACTCTTTAGCCATAAAAACAAGATCAAGAGAGCTTCGGAATGAACCACACCCCTTGCGTTGCCCTGGGCCTGACACTGCTCAGCCAGCCACTGCTGGCTGCCGAAGGCGGCTTCTTCGAG‑GACTCGAAgg < 7:157738/149‑1 (MQ=255) aTGAACTGCCGTGTTCCCAACGCTTTACCCATAAAAACAAGATCAAGAGAGCTTCGGAATGAACCACCACCCTTGCGTTGCCCTGTGCCTGACACTGCTCAGCCAGCCACTGCTGGCTGCCGAAGGCGGCTTCTTCGAG‑GACTCGAAgg < 7:199861/149‑1 (MQ=255) cTGCCGTGTTCCCAACGCTTTACCCATAAAAACAAGATCAAGAGAGCTTCGGAATGAACCACACCCCTTGCGTTGCCCTGGGCCTGACACTGCTCAGCCAGCCACTGCTGGCTGCCGAAGGCGGCTTCTTCGAG‑GACTCGAAGGCCAcc < 1:127592/149‑1 (MQ=255) cGTTTTCCCAACGCTTAACCCATAAAACCAAGATCAAGAGAGTTTCGCAATGAACCACCCCCCTTGCGTTGCCCTGGGCCTGACTCTGCCCACCCCCCCACTGGTGGCTGCCGAAGGCGGCTTCTTCGAG‑GACTCGAAGGCCACCCTGa < 2:152096/149‑1 (MQ=255) tgtTCCCAACGCTTTACCCATAAAAACAAGATCAAGAGAGCTTCGGAATGCACCACACCCCTTGCGTTGCCCTGGGCCTGACACTGCTCAGCCAGCCACTGCTGGCTGCCGAAGGCGGCttcttc > 8:141772/1‑125 (MQ=255) tgtTCCCAACGCTTTACCCATAAAAACAAGATCAAGAGAGCTTCGGAATGAACCACACCCCTTGCGTTGCCCTGGGCCTGACACTGCTCAGCCAGCCACTGCTGGCTGCCGAAGGCGGCttcttc < 7:141772/125‑1 (MQ=255) cGCTTTACCCATAAAAACAAGATCAAGAGAGCTTCGGAATGAACCACACCCCTTGCGTTGCCCTGGGCCTGACACTGCTCAGCCAGCCACTGCTGGCTGCCGAAGGCGGCTTCTTCGAG‑GACTCGAAGGCCACCCTGAGTGCCCGTAac < 1:286157/149‑1 (MQ=255) cTTTACCCATAAAAACAAGATCAAGAGAGCTTCGGAATGAACCACACCCCTTGCGTTGCCCTGGGCCTGACACTGCTCAGCCAGCCACTGCTGGCTGCCGAAGGCGGCTTCTTCGAG‑Ga > 7:156202/1‑119 (MQ=255) cTTTACCCATAAAAACAAGATCAAGAGAGCTTCGGAATGAACCACACCCCTTGCGTTGCCCTGGGCCTGACACTGCTCAGCCAGCCACTGCTGGCTGCCGAAGGCGGCTTCTTCGAG‑Ga < 8:156202/119‑1 (MQ=255) tACCCATAAAAACAAGATCAAGAGAGCTTCGGAATGAACCACACCCCTTGCGTTGCCCTGGGCCTGACACTGCTCAGCCAGCCACTGCTGGCTGCCGAAGGCGGCTTCTTCGAG‑GACTCGAAGGCCACCCTGAGTGCCCGTAactac < 5:210527/147‑1 (MQ=255) tcaaaTAAAAACAACATCAACACAGCTTAGGAATGAACCACACCCCTTGCGTTGCCCTGGGCCTGTCACTGCTCACCCAGCCACTGCTGGCTTCCGAAGGCGGCTTCTTCGAGTGACTCGAAGGCCACCCTGAGTGCCCGTAactacta < 1:47659/145‑1 (MQ=255) ccATAAAAACAAGATCAAGAGAGCTTCGGAATGAACCACACCCCTTGCGTTGCCCTGGGCCTGACACTGCTCAGCCAGCCACTGCTGGCTGCCGAAGGCGGCTTCTTCGAG‑Ga > 1:97195/1‑113 (MQ=255) ccATAAAAACAAGATCAAGAGAGCTTCGGAATGAACCACACCCCTTGCGTTGCCCTGGGCCTGACACTGCTCAGCCAGCCACTGCTGGCTGCCGAAGGCGGCTTCTTCGAG‑Ga < 2:97195/113‑1 (MQ=255) aTAAAAACAAGATCAAGAGAGCTTCGGAATGAACCACACCCCTTGCGTTGCCCTGGGCCTGACACTGCTCAGCCAGCCACTGCTGGCTGCCGAAGGCGGCTTCTTCGAG‑GACTCGAAg > 4:168581/1‑118 (MQ=255) aTAAAAACAAGATCAAGAGAGCTTCGGAATGAACCACACCCCTTGCGTTGCCCTGGGCCTGACACTGCTCAGCCAGCCACTGCTGGCTGCCGAAGGCGGCTTCTTCGAG‑GACTCGAAg < 3:168581/118‑1 (MQ=255) aTAAAAACAAGATCAAGAGAGCTTCGGAATGAACCACACCCCTTGCGTTGCCCTGGGCCTGACACTGCTCAGACAGCCACTGCTGGCTGCCGAAGGCGGCTTCTTCGAG‑GACTCGAAGGCCACCCTGAGTGCCCGTAactacta > 2:47659/1‑144 (MQ=255) aaGATCAAGAGAGCTTCGGAATGAACCACACCCCTTGCGTTGCCCTGGGCCTGACACTGCTCAGCCAGCCACTGCTGGCTGCCGAAGGCGGCTTCTTCGAG‑GACTCGAAGGCCACCCTGa < 4:84631/120‑1 (MQ=255) aaGATCAAGAGAGCTTCGGAATGAACCACACCCCTTGCGTTGCCCTGGGCCTGACACTGCTCAGCCAGCCACTGCTGGCTGCCGAAGGCGGCTTCTTCGAG‑GACTCGAAGGCCACCCTGa > 3:84631/1‑120 (MQ=255) aaGAGAGCTTCGGAATGAACCACACCCCTTGCGTTGCCCTGGGCCTGACACTGCTCAGCCAGCCACTGCTGGCTGCCGAAGGCGGCTTCTTCGAG‑GACTCGAAGGCCACCCTGAGTGCCCGTAACTACTACTTCAGCCGCGATTTTTcc < 2:292249/149‑1 (MQ=255) ttCGGAATGAACCACACCCCTTGCGTTGCCCTGGGCCTGACACTGCTCAGCCAGCCACTGCTGGCTGCCGAAGGCGGCTTCTTCGAG‑GACTCGAAGGCCACCCTGAGTGCCCGTAACTACTACTTCAGCCGCGATTTTTCCGACATTGt > 3:195899/1‑149 (MQ=255) gAATGAACCACACCCCTTGCGTTGCCCTGGGCCTGACACTGCTCAGCCAGCCACTGCTGGCTGCCGAAGGCGGCTTCTTCGAG‑GACTCGAAGGCCACCCTGAGTGCCCGTAACTACTACTTCAGCCGCGATTTTTCCGACATTGTCtgg > 8:197024/1‑149 (MQ=255) gAATGAACCACACCCCTTGCGTTGCCCTGGGCCTGACACTGCTCAGCCAGCCACTGCTGGCTGCCGAAGGCGGCTTCTTCGAG‑GACTCGAAGGCCACCCTGAGTGCCCGTAACTACTACTTCAGCCGCGATTTTTCCGACATTGTCggg > 2:182005/1‑149 (MQ=255) aaTGATCGACACCGCTTGCGTTGCCCTTGGCCTGACAGTTCTCAGCCTGGCACTGCTGGCTGCCGAAGGCGGCTTCTTCGAG‑GACTCGAAGGCCACCCTGAGTGCCCGTAACTACTACTTCAGCCGCGATTTTTCCGACATTGTCg < 4:103441/146‑1 (MQ=255) aaTGAACCACACCCCTTGCGTTGCCCTGGGCCTGACACTGCTCAGCCAGCCACTGCTGGCTGCCGAAGGCGGCTTCTTCGAG‑GACTCGAAGGCCACCCTGAGTGCCCGTAACTACTACTTCAGCCGCGATTTTTCCGACATTGTCgggg < 6:165180/149‑1 (MQ=255) aaTGAACCACACCCCTTGCGTTGCCCTGGGCCTGACACTGCTCAGCCAGCCACTGCTGGCTGCCGAAGGCGGCTTCTTCGAG‑GACTCGAAGGCCACCCTGAGTGCCCGTAACTACTACTTCAGCCGCGATTTTTCCGACATTGTCgggg > 7:168586/1‑149 (MQ=255) acacCCCTTGCGTTGCCCTGGGCCTGACACTGCTCAGCCAGCCACTGCTGGCTGCCGAAGGCGGCTTCTTCGAG‑GACTCGAAGGCCACCCTGAGTGCCCGTAACTACTACTTCAGCCGCGATTTTTCCGACATTGTCGGGGCCaacaaa > 5:20046/1‑149 (MQ=255) ccTTGCGTTGCCCTGGGCCTGACACTGCTCAGCCAGCCACTGCTGGCTGCCGAAGGCGGCTTCTTCGAG‑GACTCGAAGGCCACCCTGa > 6:138515/1‑88 (MQ=255) ccTTGCGTTGCCCTGGGCCTGACACTGCTCAGCCAGCCACTGCTGGCTGCCGAAGGCGGCTTCTTCGAG‑GACTCGAAGGCCACCCTGa < 5:138515/88‑1 (MQ=255) gTTGCCCTGGGCCTGACACTGCTCAGCCAGCCACTGCTGGCTGCCGAAGGCGGCTTCTTCGAG‑GACTCGAAGGCCACCCTGAGTGCCCGTAACTACTACTTCAGCCGCGATTTTTCCGACATTGTCggg < 5:80596/129‑1 (MQ=255) gTTGCCCTGGGCCTGACACTGCTCAGCCAGCCACTGCTGGCTGCCGAAGGCGGCTTCTTCGAG‑GACTCGAAGGCCACCCTGAGTGCCCGTAACTACTACTTCAGCCGCGATTTTTCCGACATTGTCggg > 6:80596/1‑129 (MQ=255) gTTGCCCTGGGCCTGACACTGCTCAGCCAGCCACTGCTGGCTGCCGAAGGCGGCTTCTTCGAG‑GACTCGAAGGCCACCCTGAGTGCCCGTAACTACTACTTCAGCCGCGATTTTTCCGACATTGTCGGGGCCAACAAACAGTCCAAGGc > 7:273318/1‑149 (MQ=255) ttGCCCTGGGCCTGACACTGCTCAGCCAGCCACTGCTGACTGCCGAAGGCGGCTTCTTCGAG‑GACTCGAAGGCCACCCTGAGTGCCCGTAACTACTACTTCAGCCGCGATTTTTCCGACATTGTCGGGGCCAACAAACAGTCCAAGGcc > 5:184088/1‑149 (MQ=255) gCCCTGGGCCTGACACTGCTCAGCCAGCCACTGCTGGCTGCCGAAGGCGGCTTCTTCGAG‑GACTCGAAGGCCACCCTGAGTGCCCGTAACTACTACTTCAGCCGCGATTTTTCCGACATTGTCGGGGCCAACAAACAGTCCAAGGCCg < 8:273318/148‑1 (MQ=255) ggCCTGACACTGCTCAGCCAGCCACTGCTGGCTGCCGAAGGCGGCTTCTTCGAG‑GACTCGAAGGCCACCCTGAGTGCCCGTAACTACTACTTCAGCCGCGATTTTTCCGACATTGTCGGGGCCAACAAACAGTCCAAGGCCGAGGAGTg < 4:195899/149‑1 (MQ=255) tGACACTGCTCAGCCAGCCACTGCTGGCTGCCGAAGGCGGCTTCTTCGAG‑GACTCGAAGGCCACCCTGAGTGCCCGTAACTACTACTTCAGCCGCGATTTTTCCGACATTGTCggg > 2:289721/1‑116 (MQ=255) tGACACTGCTCAGCCAGCCACTGCTGGCTGCCGAAGGCGGCTTCTTCGAG‑GACTCGAAGGCCACCCTGAGTGCCCGTAACTACTACTTCAGCCGCGATTTTTCCGACATTGTCggg < 1:289721/116‑1 (MQ=255) gACACTGCTCAGCCAGCCACTGCTGGCTGCCGAAGGCGGCTTCTTCGAG‑GACTCGAAGGCCACCCTGAGTGCCCGTAACTACTACTTCAGCCGCGATTTTTCCGACATTGTCGGGGCCAACAAACAGTCCAAGGCCGAGGAGTGGGcc > 3:142010/1‑148 (MQ=255) gACACTGCTCAGCCAGCCACTGCTGGCTGCCGAAGGCGGCTTCTTCGAG‑GACTCGAAGGCCACCCTGAGTGCCCGTAACTACTACTTCAGCCGCGATTTTTCCGACATTGTCGGGGCCAACAAACAGTCCAAGGCCGAGGAGTGGGcc > 3:137361/1‑148 (MQ=255) acacTGCTCAGCCAGCCACTGCTGGCTGCCGAAGGCGGCTTCTTCGAG‑GACTCGAAGGCCACCCTGAGTGCCCGTAACTACTACTTCAGCCGCGATTTTTCCGACATTGTCGGGGCCAACAAACAGTCCAAGGCCGAGGAGTGGGcc < 3:15391/147‑1 (MQ=255) acTGCTCAGCCAGCCACTGCTGGCTGCCGAAGGCGGCTTCTTCGAT‑GACTCGAAGGCCACCCTGAGTGCCCGTAACTACTACTTCAGCCGCGATTTTTCCGACATTGTCGGGGCCAACAAACAGTCCAAGGCCGAGGAGTGGGCCCAgg < 6:20046/149‑1 (MQ=255) gCTCAGCCAGCCACTGCTGGCTGCCGAAGGCGGCTTCTTCGAG‑GACTCGAAGGCCACCCTGAGTGCCCGTAACTACTACTTCAGCCGCGATTTTTCCGACATTGTCGGGGCCAACAAACAGTCCAAGGCCGAGGAGTGGGCCCAGGGtt > 5:195028/1‑149 (MQ=255) | CGCTGCTGAGGCTGCGCCAGCCACGTGCCCGGGAGGTGCTGCGCCGTACCCCATGAACTGCCGTGTTCCCAACGCTTTACCCATAAAAACAAGATCAAGAGAGCTTCGGAATGAACCACACCCCTTGCGTTGCCCTGGGCCTGACACTGCTCAGCCAGCCACTGCTGGCTGCCGAAGGCGGCTTCTTCGAG‑GACTCGAAGGCCACCCTGAGTGCCCGTAACTACTACTTCAGCCGCGATTTTTCCGACATTGTCGGGGCCAACAAACAGTCCAAGGCCGAGGAGTGGGCCCAGGGTT > NC_002947/3589370‑3589666 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |