Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,628,082 | C→G | 8.5% | intergenic (+11/‑129) | PP_3198 → / → PP_3199 | 2Fe‑2S ferredoxin/monooxygenase |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,628,082 | 0 | C | G | 8.5% | 139.3 / 2.7 | 45 | intergenic (+11/‑129) | PP_3198/PP_3199 | 2Fe‑2S ferredoxin/monooxygenase |
Reads supporting (aligned to +/- strand): ref base C (22/19); new base G (2/2); total (24/21) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CCACGGCGCGCGCTTCACGCCCGAAGACGGCACTTGCGTTCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACGGGGCGCACAACAAGAACAAAACGTGAGACATGCCATGAATACTGT > NC_002947/3627939‑3628221 | ccACGGCGCGCGCTTCACGCCCGAAGACGGCACTTGCGTTCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCGCTTGAGCAGCTCGATCGCTGACCTATcgcgccgcgc > 6:210486/1‑148 (MQ=255) cgcgcgcTTCACGCCCGAAGACGGCACTTGCGTTCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGt < 1:46049/149‑1 (MQ=255) gcgcTTCACGCCCGAAGACGGCACTTGCGTTCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGc < 2:40412/149‑1 (MQ=255) ttCACGCCCGAAGACGGCACTTGCGTTCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCGGCGCGATAGGTcag < 5:122990/145‑3 (MQ=255) ttCACGCCCGAAGACGGCACTTGCGTTCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCGGCGCGATAGGTcag > 6:122990/1‑143 (MQ=255) gCCCGAAGACGGCACTTGCGTTCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCcgcga > 5:144630/1‑149 (MQ=255) aaGACGGCACTTGCGTTCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCcgcgacgcga > 4:193340/1‑149 (MQ=255) cGGCACTTGCGTTCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTgg > 5:2098/1‑149 (MQ=255) ggCACTTGCGTTCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGt > 4:43259/1‑149 (MQ=255) gTTCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATGGACCg > 5:147235/1‑149 (MQ=255) gTTCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATGGACCg > 3:185549/1‑149 (MQ=255) ttCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATGGACCgg > 5:11299/1‑149 (MQ=255) cTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCGTTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATg > 3:105083/1‑133 (MQ=255) cTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCGTTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATg < 4:105083/133‑1 (MQ=255) ccGAGGCGAAGCCTTGGAGGCACTCGGTCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATGGACCGGCGCAGGCGGGAAg > 1:4311/1‑149 (MQ=255) ccGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCGGCGCGATAg > 3:247368/1‑102 (MQ=255) ccGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCGGCGCGATAg < 4:247368/102‑1 (MQ=255) ccGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATGGACCGGCGCAGGCGGGAAg < 7:80042/149‑1 (MQ=255) ccGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACACGATTGGTCATGGACCGGCGCAGGCGGGaa < 4:104678/148‑1 (MQ=255) aGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATGGACCGGCGCAGGCGGGAAGCtg < 6:11299/149‑1 (MQ=255) gCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATGGACCGGCGCAGGCGGGAAGCtgtg > 6:209439/1‑149 (MQ=255) ccgtGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATGGACCGGCGCAGGCGGGAAGCTGTGCATAgg < 3:193340/146‑1 (MQ=255) gAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATGGACCGGCGCAGGCGGGa < 7:257042/131‑1 (MQ=255) gAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATGGACCGGCGCAGGCGGGa > 8:257042/1‑131 (MQ=255) aGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAg > 3:113882/1‑148 (MQ=255) ggCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAgg > 1:218642/1‑148 (MQ=255) aCTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAAc < 5:210486/149‑1 (MQ=255) cTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACg > 7:244029/1‑149 (MQ=255) caAGGAAGCGGGCGGCTGGCTGCTATTGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGcccc > 2:282346/1‑149 (MQ=255) ggctggctGCTATTGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCGTCATG‑CGGGgcg < 6:147235/149‑1 (MQ=255) tGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCT‑CATGACGGGGCGCACAACAAGAAc < 1:219102/148‑1 (MQ=255) ccGCTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACGGGGCGCACAACAAGAACaa > 3:84984/1‑148 (MQ=255) gCTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACGGGGCGCACAACAAGAACAAAAc < 3:43259/149‑1 (MQ=255) gAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACGGGGCGCACAACAAGAACAAAACGt < 2:4311/147‑1 (MQ=255) gAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACGGGGCGCACAACAAGAACAAAACGt < 2:218642/147‑1 (MQ=255) gAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACGGGGCGCACAACAAGAACAAAACGTga < 8:287873/149‑1 (MQ=255) gcagcTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACGGGGCGCACAACAAGAACAAAACGTgaga > 5:32225/1‑149 (MQ=255) gagcTCGATCGGTGACCTATCGCGCCGCGCGTTAGGTCGCATCCCGCGACGCGATTGGTCATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGTCCGCCCCG‑CATGACGGGGGGCACAAGAAGAACAAAACGTGAGAc < 4:113882/148‑1 (MQ=255) cagcTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACGGGGCGCACAACAAGAACAAAACGTgaga > 2:280081/1‑148 (MQ=255) gcTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACGGGGCGCACAACAAGAACAAAACGTGAGACAt < 5:209439/149‑1 (MQ=255) cTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACGGGGCGCACAACAAGAACAAAACGTGAGACATg < 8:244029/149‑1 (MQ=255) gATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACGGGGCGCACAACAAGAACAAAACGTGAGACATGCCa > 4:108878/1‑149 (MQ=255) tCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACGGGGCGCACAACAAGAACAAAACGTga > 7:235636/1‑138 (MQ=255) tCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACGGGGCGCACAACAAGAACAAAACGTga < 8:235636/138‑1 (MQ=255) tATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACGGGGCGCACAACAAGAACAAAACGTGAGACATGCCATGAATACtgt > 7:265411/1‑148 (MQ=255) tATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACGGGGCGCACAACAAGAACAAAACGTGAGACATGCCATGAATACtgt > 7:269652/1‑148 (MQ=255) | CCACGGCGCGCGCTTCACGCCCGAAGACGGCACTTGCGTTCACGGCCCCTGCCGAGGCGAAGCCTTGGAGGCACTCGATCACAAGGAAGCGGGCGGCTGGCTGCTATTGCCGCTTGAGCAGCTCGATCGCTGACCTATCGCGCCGCGCGATAGGTCGCATCCCGCGACGCGATTGGTCATGGACCGGCGCAGGCGGGAAGCTGTGCATAGGCACAGGAAACGGCCGCCCCG‑CATGACGGGGCGCACAACAAGAACAAAACGTGAGACATGCCATGAATACTGT > NC_002947/3627939‑3628221 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |