| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,760,424 | T→C | 6.4% | intergenic (+82/‑229) | folEB → / → PP_3325 | GTP cyclohydrolase I/ferric siderophore receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,760,424 | 0 | T | C | 6.4% | 177.6 / 2.9 | 63 | intergenic (+82/‑229) | folEB/PP_3325 | GTP cyclohydrolase I/ferric siderophore receptor |
| Reads supporting (aligned to +/- strand): ref base T (35/23); new base C (2/2); total (37/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.48e-01 | |||||||||||
CCCCGCAGGCCGCTGCGCCTGACCAACAAGAATCATTTGCAACCGGTAATGAACGCTAACCACTAGCGTTACGTTATTACATCTAATAACATGCGCATCCCAACACATGAACATTTCCTCATCAGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATGCAGCACGGCCCGAAGCAGGGCGCGGCATCGATGTTGGCATCGAGTGCAGCCTGCACAGCCTACACCGTGGAGCCTGATGGTGTACCCGTTGTGAT > NC_002947/3760284‑3760571 | ccccGCAGGCCGCTGCGCCTGACCAACAAGAATCATTTGCAACCGGTAATGAACGCTAACCACTAGCGTTACGTTATTACATCTAATAACATGCGCATCCCAACACATGAACATTTCCTCATCAGGATTCATTTGTCAGGTCTGACGc > 3:89455/1‑148 (MQ=255) cccGCAGGCCGCTGCGCCTGACCAACAAGAATCATTTGCAACCGGTAATGAACGCTAACCACTAGCGTTACGTTATTACATCTAATAACATGCGCATCCCAACACATGCACATTTCCTCAGCAGGATTCATTTGTCAGGTCTGCCGc > 6:157477/1‑147 (MQ=255) ccGCAGGCCGCTGCGCCTGACCAACAAGAATCATTTGCAACCGGTAATGAACGCTAACCACTAGCGTTACGTTATTACATCTAATAACATGCGCATCCCAACACATGAACATTTCCTCATCAGGATTCATTTGTCAGGTCTGACGCAAg > 7:82145/1‑149 (MQ=255) cTGCGCCTGACCAACAAGAATCATTTGCAACCGGTAATGAACGCTAACCACTAGCGTTACGTTATTACATCTAATAACATGCGCATCCCAACACATGAACATTTCCTCATCAGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGct > 4:284727/1‑149 (MQ=255) cgcCTGACCAACAAGAATCATTTGCAACCGGTAATGAACGCTAACCACTAGCGTTACGTTATTACATCTAATAACATGCGCATCCCAACACATGAACATTTCCTCATCAGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGctct < 3:275334/148‑1 (MQ=255) gcCTGACCAACAAGAATCATTTGCAACCGGTAATGAACGCTAACCACTAGCGTTACGTTATTACATCTAATAACATGCGCATCCCAACACATGAACATTTCCTCATCAGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTAc < 7:141434/149‑1 (MQ=255) ccTGACCAACAAGAATCATTTGCAACCGGTAATGAACGCTAACCACTAGCGTTACGTTATTACATCTAATAACATGCGCATCCCAACACATGAACATTTCCTCATCAGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACt < 2:222735/149‑1 (MQ=255) gACCAACAAGAATCATTTGCAACCGGTAATGAACGCTAACCACTAGCGTTACGTTATTACATCTAATAACATGCGCATCCCAACACATGAACATTTCCTCATCAGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCg > 7:111638/1‑148 (MQ=255) gAATCATTTGCAACCGGTAATGAACGCTAACCACTAGCGTTACGTTATTACATCTAATAACATGCGCATCCCAACACATGAACATTTCCTCATCAGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTc > 3:254982/1‑149 (MQ=255) cGGTAATGAACGCTAACCACTAGCGTTACGTTATTACATCTAATAACATGCGCATCCCAACACATGAACATTTCCTCATCAGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGAt > 2:215442/1‑149 (MQ=255) aTGAACGCTAACCACTAGCGTTACGTTATTACATCTAATAACATGCGCATCCCAACACATGAACATTTCCTCATCAGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATgcagc > 3:17203/1‑149 (MQ=255) aTGAACGCTAACCACTAGCGTTACGTTATTACATCTAATAACATGCGCATCCCAACACATGAACATTTCCTCATCAGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATgcag < 4:89455/148‑1 (MQ=255) tAACCACTAGCGTTACGTTATTACATCTAATAACATGCGCATCCCAACACATGAACATTTCCTCATCAGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGa > 3:49189/1‑135 (MQ=255) tAACCACTAGCGTTACGTTATTACATCTAATAACATGCGCATCCCAACACATGAACATTTCCTCATCAGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGa < 4:49189/135‑1 (MQ=255) tAACCACTAGCGTTACGTTATTACATCTAATAACATGCGCATCCCAACACATGAACATTTCCTCATCAGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATGCAGCACGGccc > 3:151784/1‑148 (MQ=255) cACTAGCGTTACGTTATTACATCTAATAACATGCGCATCCCAACACATGAACATTTCCTCATCAGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATGCAGCACGGCCCGAAg > 4:50033/1‑148 (MQ=255) aCTAGCGTTACGTTATTACATCTAATAACATGCGCATCCCAACACATGAACATTTCCTCATCAGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATg < 3:180773/132‑1 (MQ=255) aCTAGCGTTACGTTATTACATCTAATAACATGCGCATCCCAACACATGAACATTTCCTCATCAGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATg > 4:180773/1‑132 (MQ=255) aCTAGCGTTACGTTATTACATCTAATAACATGCGCATCCCAACACATGAACATTTCCTCATCAGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATGCAGCACGGCCCGAAGCa < 4:254982/149‑1 (MQ=255) aCTAGCGTTACGTTATTACATCTAATAACATGCGCATCCCAACACATGAACATTTCCTCATCAGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATGCAGCACGGCCCGAAGCa < 5:305983/149‑1 (MQ=255) gCGTTACGTTATTACATCTAATAACATGCGCATCCCAACACATGAACATTTCCTCATCAGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATGCAGCACGGCCCGAAGCAGGgc < 1:215442/149‑1 (MQ=255) ttacgttaTTACATCTAATAACATGCGCATCCCAACACATGAACATTTCCTCATCAGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATGCAGCACGGCCCGAAGCAGGGcgcg < 8:82145/149‑1 (MQ=255) acgttaTTACATCTAATAACATGCGCATCCCAACACATGAACATTTCCTCATCAGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATGCAGCACGGCCCGAAGCAGGGCGCgg > 7:49430/1‑148 (MQ=255) gttaTTACATCTAATAACATGCGCATCCCAACACATGAACATTTCGTCATCAGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATGCAGCACGGCCCGAAGCAGGGCGCGGCAt > 1:222429/1‑149 (MQ=255) ttattaCATCTAATAACATGCGCATCCCAACACATGAACATTTCCTCATCAGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATGCAGCACGGCCCGAAGCAGGGCGCGGCATc > 5:99880/1‑149 (MQ=255) aCATCTAATAACATGCGCATCCCAACACATGAACATTTCCTCATCAGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATGCAGCACGGCCCGAAGCAGGGCGCGGCATCGATg < 3:284727/148‑1 (MQ=255) tCTAATAACATGCGCATCCCAACACATGAACATTTCCTCATCAGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATTTGTGATGCAGCACGGCCCGAAGCAGGGCGCGGCATCGATGTTgg > 2:221805/1‑149 (MQ=255) taataaCATGCGCATCCCAACACATGAACATTTCCTCATCAGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATGCAGCACGGCCCGAAGCAGGGCGCGGCATCGATGTTggaa > 7:70110/1‑147 (MQ=255) aataaCATGCGCATCCCAACACATGAACATTTCCTCATCAGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATGCAGCACGGCCCGAAGCAGGGCGCGGCATCGATGTTGGCAt > 3:299174/1‑149 (MQ=255) ataaCATGCGCATCCCAACACATGAACATTTCCTCATCAGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATGCAGCACGGCCCGAAGCAGGGCGCGGCATCGATGTTGGCATc < 4:17203/149‑1 (MQ=255) aaCATGCGCATCCCAACACATGAACATTTCCTCATCAGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATGCAGCACGGCCCGAAGCAGGGCGCGGCATCGATGTTGGCATc > 4:266345/1‑147 (MQ=255) cATGCGCATCCCAACACATGAACATTTCCTCATCAGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATGCAGCACGGCCCGAAGCAGGGCGCGGCATCGATGTTGGCATCGAGt < 4:299174/149‑1 (MQ=255) gcgcATCCCAACACATGAACATTTCCTCATCAGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATGCAGCACGGCCCGAAGCAGGGCGCGGCATCGATGTTGGCATCGAGTg > 6:212239/1‑147 (MQ=255) cgcATCCCAACACATGAACATTTCCTCATCAGGATTCATTTGTCAGGGCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATGCAGCACGGCCCGAAGCAGGGCGCGGCATCGATGTTGGCATCGAGTGCa < 5:157477/148‑1 (MQ=255) aTCCCAACACATGAACATTTCCTCATCAGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTAATCTGTGATGCAGCACGGCACGAAGCAGGGCGCGGCATCGATGTTGGCATCGAGTGCAGCCt > 2:308157/1‑149 (MQ=255) ccAACACATGAACATTTCCTCATCAGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATGCAGCACGGCCCGAAGCAGGGCGCGGCATCGATGTTGGCATCGAGTGCAGCCTGca < 8:6880/149‑1 (MQ=255) cAACACATGAACATTTCCTCATCAGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATGCAGCACGGCCCGAAGCAGGGCGCGGCATCGATGTTg > 8:67280/1‑129 (MQ=255) cacaTGAACATTTCCTCATCAGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATGCAGCACGGCCCGAAGCAGGGCGCGGCATCGATGTTGGCATCGAGTGCAGCCTGCACAGc < 6:99880/149‑1 (MQ=255) acaTGAACATTTCCTCATCAGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATGCAGCACGGCCCGAAGCAGGGCGCGGCATCGATGTTGGCATCGAGTGCAGCCTGCACAGc > 8:271552/1‑148 (MQ=255) aTGAACATTTCCTCATCAGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATGCAGCACGGCCCGAAGCAGGGCGCGGCATCGATGTTGGc > 7:125514/1‑125 (MQ=255) aTGAACATTTCCTCATCAGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATGCAGCACGGCCCGAAGCAGGGCGCGGCATCGATGTTGGc < 8:125514/125‑1 (MQ=255) aTTTCCTCATCAGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATGCAGCACGGCCCGAAGCAGGGCGCGGCATCGATGTTGGCATCGAGTGCAGCCTGCACAGCCTACACCGt > 8:95445/1‑149 (MQ=255) tttCCTCATCAGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATGCAGCACGGCCCGAAGCAGGGCGCGGCATCGATGTTGGCATCGAGTGCAGCCTGCACAGCCTACACCGTg < 8:226895/149‑1 (MQ=255) cTCATCAGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATGCAGCACGGCCCGAAGCAGGGCGCGGCATCGATGTTGGCATCGAGTGCAGCCTGCACAGCCTACACCGTGGAGc > 6:111961/1‑149 (MQ=255) cTCATCAGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATGCAGCACGGCCCGAAGCAGGGCGCGGCATCGATGTTGGCATCGAGTGCAGCCTGCACAGCCTACACCGTGGAGc < 1:308157/149‑1 (MQ=255) catcaGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATGCAGCACGGCCCGAAGCAGGGCGCGGCATCGATGTTGGCATCGAGTGCAGCCTGCACAGCCTACACCGTGGAGCCt > 2:163721/1‑149 (MQ=255) atcaGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATGCAGCACGGCCCGAAGCAGGGCGCGGCATCGATGTTGGCATCGAGTGCAGCCTGcaca < 5:75660/130‑1 (MQ=255) atcaGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATGCAGCACGGCCCGAAGCAGGGCGCGGCATCGATGTTGGCATCGAGTGCAGCCTGcaca > 6:75660/1‑130 (MQ=255) caGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATGCAGCACGGCCCGAAGCAGGGCGCGGCATCGATGTTGGCATCGAGt < 1:7337/116‑1 (MQ=255) caGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATGCAGCACGGCCCGAAGCAGGGCGCGGCATCGATGTTGGCATCGAGt > 2:7337/1‑116 (MQ=255) caGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATGCAGCACGGCCCGAAGCAGGGCGCGGCATCGATGTTGGCATCGAGTGCAGCCTGCACAGCCTACACCGTGGAGCCTGAt > 8:100704/1‑149 (MQ=255) aGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATGCAGCACGGCCCGAAGCAGGGCGCGGCATCGATGTTGGCATCGAGTGCAGCCTGCACAGCCTACACCGTGGAGCCTGATg < 3:50033/149‑1 (MQ=255) ggATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATGCAGCACGGCCCGAAGCAGGGCGCGGCATCGATGTTGGCATCGAGTGCAGCCTGCACAGCCTACACCGTGGAGCCTGATgg > 1:125091/1‑149 (MQ=255) aTTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATGCAGCACGGCCCGAAGCAGGGCGCGGCATCGATGTTGGCATCGAGTGCAGCCTGCACAGCCTACACCGTGGAGCCTGATGgtg > 6:313479/1‑149 (MQ=255) cttgcgTCAGACCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATGCAGCACGGCCCGAAGCAGGGCGCGGCATCGATGTTGGCATCGAGTGCAGCCTGCACAGCCTacac < 2:93061/124‑1 (MQ=255) cttgcgTCAGACCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATGCAGCACGGCCCGAAGCAGGGCGCGGCATCGATGTTGGCATCGAGTGCAGCCTGCACAGCCTacac < 2:96835/124‑1 (MQ=255) cttgcgTCAGACCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATGCAGCACGGCCCGAAGCAGGGCGCGGCATCGATGTTGGCATCGAGTGCAGCCTGCACAGCCTacac > 1:96835/6‑129 (MQ=255) cttgcgTCAGACCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATGCAGCACGGCCCGAAGCAGGGCGCGGCATCGATGTTGGCATCGAGTGCAGCCTGCACAGCCTacac > 1:93061/6‑129 (MQ=255) tttGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATGCAGCACGGCCCGAAGCAGGGCGCGGCATCGATGTTGGCATCGAGTGCAGCCTGCACAGCCTACACCGTGGAGCCCGATGGTGTAccc > 2:293792/1‑149 (MQ=255) tCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGa < 6:46831/56‑1 (MQ=255) tCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGa > 5:46831/1‑56 (MQ=255) tCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATGCAGCACGGCCCGAAGCAGGGCGCGGCATCGATGTTGGCATCGAGTGCAGCCTGCACAGCCTACACCGTGGAGCCTGATGGTGTACCCGtt < 3:300582/148‑1 (MQ=255) gTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATGCAGCACGGCCCGAAGCAGGGCGCGGCATCGATGTTGGCCTCGAGTGCAGCCTGCACAGCCTACACCGTGGAGCCTGATGGTGTACCCGTTGTGAt > 4:276150/1‑149 (MQ=255) | CCCCGCAGGCCGCTGCGCCTGACCAACAAGAATCATTTGCAACCGGTAATGAACGCTAACCACTAGCGTTACGTTATTACATCTAATAACATGCGCATCCCAACACATGAACATTTCCTCATCAGGATTCATTTGTCAGGTCTGACGCAAGGCGGGCCGCTCTACTCGCAAGGGTTTCTTGTCATCTGTGATGCAGCACGGCCCGAAGCAGGGCGCGGCATCGATGTTGGCATCGAGTGCAGCCTGCACAGCCTACACCGTGGAGCCTGATGGTGTACCCGTTGTGAT > NC_002947/3760284‑3760571 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |