Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,043,323 | C→T | 8.0% | E141K (GAG→AAG) | PP_3564 ← | AraC family transcriptional regulator |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,043,323 | 0 | C | T | 8.0% | 144.6 / 2.6 | 50 | E141K (GAG→AAG) | PP_3564 | AraC family transcriptional regulator |
Reads supporting (aligned to +/- strand): ref base C (19/27); new base T (2/2); total (21/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.63e-01 |
AGCGCACGGGTTCGCCCGCAAGCGCGTGACAGTAGTGCAACGGCCAGATCTATGGCGGCGGTGCCACCGGCGCACGTGATGCGGTTGCCATCGATGCAGTACAACTGCTCGCGCAACAGCTGCAACTGCGGAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACGCCTGGTAACG > NC_002947/4043175‑4043458 | aGCGCACGGGTTCGCCCGCAAGCGCGTGACAGTAGTGCAACGGCCAGATCTATGGCGGCGGTGCCACCGGCGCACGTGATGCGGTTGCCATCGATGCAGTACAACTGCTCGCGCAACAGCTGCAACTGCGGAAACGCAGCACGAAACTc < 2:133123/149‑1 (MQ=255) cGGGTTCGCCCGCAAGCGCGTGACAGTAGTGCAACGGCCAGATCTATGGCGGCGGTGCCACCGGCGCACGTGATGCGGTTGCCATCGATGCAGTACAACTGCTCGCGCAACAGCTGCAACTGCGGAAACGCAGCACGAAACTCGGCTTc < 5:142777/149‑1 (MQ=255) ccGCAAGCGCGTGACAGTAGTGCAACGGCCAGATCTATGGCGGCGGTGCCACCGGCGCACGTGATGCGGTTGCCATCGATGCAGTACAACTGCTCGCGCAACAGCTGCAACTGCGGAAACGCAGCACGAAACTCGGCTTCGTGACGc > 6:63129/1‑147 (MQ=255) ccGCAAGCGCGTGACAGTAGTGCAACGGCCAGATCTATGGCGGCGGGGCCACCGGCGCACGTGATGCGGGTGCCATCGATGCAGTACAACTGCTCGCGCAACAGCTGCAACTGCGGAAACGCAGCACGAAACTCGGCTTCGTGACGCCa < 4:46529/149‑1 (MQ=255) gCAAGCGCGTGACAGTAGTGCAACGGCCAGATCTATGGCGGCGGTGCCACCGGCGCACGTGATGCGGTTGCCATCGATGCAGTACAACTGCTCGCGCAACAGCTGCAACTGCGGAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGt < 5:39287/149‑1 (MQ=255) cAAGCGCGTGACAGTAGTGCAACGGCCAGATCTATGGCGGCGGTGCCACCGGCGCACGTGATGCGGTTGCCATCGATGCAGTACAACTGCTCGCGCAACAGCTGCAACTGCGGAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTg < 1:301545/149‑1 (MQ=255) cAGTAGTGCAACGGCCAGATCTATGGCGGCGGTGCCACCGGCGCACGTGATGCGGTTGCCATCGATGCAGTACAACTGCTCGCGCAACAGCTGCAACTGCGGAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACtt < 5:111400/149‑1 (MQ=255) agtagtGCAACGGCCAGATCTATGGCGGCGGTGCCACCGGCGCACGTGATGCGGTTGCCATCGATGCAGTACAACTGCTCGCGCAACAGCTGCAACTGCGGAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACttt > 2:52656/1‑149 (MQ=255) cAACGGCCAGATCTCTGGCGGCGGTGCCACCGGCGCACGTGATGCGGTTGCCATCGATGCAGTACAACTGCTCGCGCAACAGCTGCAACTGCGGAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGcccc < 6:120073/149‑1 (MQ=255) aaCGGCCAGATCTATGGCGGCGGTGCCACCGGCGCACGTGATGCGGTTGCCATCGATGCAGTACAACTGCTCGCGCAACAGCTGCAACTGCGGAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCt < 5:63129/149‑1 (MQ=255) aCGGCCAGATCTATGGCGGCGGTGCCACCGGCGCACGTGATGCGGTTGCCATCGATGCAGTACAACTGCTCGCGCAACAGCTGCAACTGCGGAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCTg > 4:175263/1‑149 (MQ=255) ggCCAGATCTATGGCGGCGGTGCCACCGGCGCACGTGATGCGGTTGCCATCGATGCAGTACAACTGCTCGCGCAACAGCTGCAACTGCGGAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACttt > 5:25895/1‑138 (MQ=255) ggCCAGATCTATGGCGGCGGTGCCACCGGCGCACGTGATGCGGTTGCCATCGATGCAGTACAACTGCTCGCGCAACAGCTGCAACTGCGGAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACttt < 6:25895/138‑1 (MQ=255) ccAGATCTATGGCGGCGGTGCCACCGGCGCACGTGATGCGGTTGCCATCGATGCAGTACAACTGCTCGCGCAACAGCTGCAACTGCGGAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACttt < 6:283900/136‑1 (MQ=255) ccAGATCTATGGCGGCGGTGCCACCGGCGCACGTGATGCGGTTGCCATCGATGCAGTACAACTGCTCGCGCAACAGCTGCAACTGCGGAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCTgcag > 6:317948/1‑148 (MQ=255) ccAGATCTATGGCGGCGGTGCCACCGGCGCACGTGATGCGGTTGCCATCGATGCAGTACAACTGCTCGCGCAACAGCTGCAACTGCGGAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCTgcag > 4:52537/1‑148 (MQ=255) tGGCGGCGGTGCCACCGGCGCACGTGATGCGGTTGCCATCGATGCAGTACAACTGCTCGCGCAACAGCTGCAACTGCGGAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCTGCAGCAGGcc < 3:137629/145‑1 (MQ=255) gTGCCACCGGCGCACGTGATGCGGTTGCCATCGATGCAGTACAACTGCTCGCGCAACAGCTGCAACTGCGGAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCTgcagca < 4:113371/133‑1 (MQ=255) gTGCCACCGGCGCACGTGATGCGGTTGCCATCGATGCAGTACAACTGCTCGCGCAACAGCTGCAACTGCGGAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCTgcagca > 3:113371/1‑133 (MQ=255) gTTGCCATCGATGCAGTACAACTGCTCGCGCAACAGCTGCAACTGCGGAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGAccc > 5:57889/1‑149 (MQ=255) aTCGATGCAGTACAACTGCTCGCGCAACAGCTGCAACTGCGGAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCccac > 4:280543/1‑147 (MQ=255) aTCGATGCAGTACAACTGCTCGCGCAACAGCTGCAACTGCGGAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCccac > 7:72949/1‑147 (MQ=255) tCGATGCAGTACAACTGCTCGCGCAACAGCTGCAACTGCGGAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAg > 7:152333/1‑149 (MQ=255) gATGCAGTACAACTGCTCGCGCAACAGCTGCAACTGCGGAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCt < 3:228106/149‑1 (MQ=255) cAGTACAACTGCTCGCGCAACAGCTGCAACTGCGGAACCGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGac < 8:125242/149‑1 (MQ=255) aaCTGCTCGCGCAACAGCTGCAACTGCGGAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCTGCAGCAGGCCgca < 2:92347/98‑1 (MQ=255) aaCTGCTCGCGCAACAGCTGCAACTGCGGAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCTGCAGCAGGCCgca > 1:92347/1‑98 (MQ=255) aaCTGCTCGCGCAACAGCTGCAACTGCGGAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGc > 7:1854/1‑149 (MQ=255) cTCGCGCAACAGCTGCAACTGCGGAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCGCACCAGCTTGACACCCGCCtt < 6:57889/147‑1 (MQ=255) cTCGCGCAACAGCTGCAACTGCGGAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCtt < 3:52537/147‑1 (MQ=255) gcgcAACAGCTGCAACTGCGGAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTggcgg > 1:164494/1‑149 (MQ=255) cAACAGCTGCAACTGCGGAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGTCCCCCACCAGCTTGACACCCGCCTTGGCGgcct < 5:317948/149‑1 (MQ=255) cAACAGCTGCAACTGCGGAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACATCCGCCTTGGCGgcct < 8:72949/149‑1 (MQ=255) cAACAGCTGCAACTGCGGAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGgcct < 2:164494/149‑1 (MQ=255) cAACAGCTGCAACTGCGGAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGgcct < 1:52656/149‑1 (MQ=255) aCAGCTGCAACTGCGGAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGgcctgc < 6:89431/149‑1 (MQ=255) cAGCTGCAACTGCGGAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGgcc < 8:73136/145‑1 (MQ=255) cAGCTGCAACTGCGGAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACACGCCTTGGCGgcctag > 7:73136/1‑146 (MQ=255) tGCAACTGCGGAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAg > 5:101962/1‑149 (MQ=255) tGCGGAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCCGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACGc > 8:189534/1‑149 (MQ=255) cGGAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACGc < 3:175263/147‑1 (MQ=255) cGGAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACGCCt < 8:152333/149‑1 (MQ=255) gAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGa < 4:121176/138‑1 (MQ=255) gAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGa > 3:121176/1‑138 (MQ=255) gAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACGCCTgg < 8:1854/149‑1 (MQ=255) cGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACGCCTGGTAAc < 3:280543/149‑1 (MQ=255) gcagcaCGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACGCCTGGTAACg > 5:286317/1‑149 (MQ=255) cGAAACTTGGCTTCGTGACGCCAGTGCACAACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACGcc < 2:291971/135‑1 (MQ=255) cGAAACTTGGCTTCGTGACGCCAGTGCACAACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACGcc < 2:287327/135‑1 (MQ=255) cGAAACTTGGCTTCGTGACGCCAGTGCACAACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACGcc > 1:291971/1‑135 (MQ=255) cGAAACTTGGCTTCGTGACGCCAGTGCACAACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACGcc > 1:287327/1‑135 (MQ=255) | AGCGCACGGGTTCGCCCGCAAGCGCGTGACAGTAGTGCAACGGCCAGATCTATGGCGGCGGTGCCACCGGCGCACGTGATGCGGTTGCCATCGATGCAGTACAACTGCTCGCGCAACAGCTGCAACTGCGGAAACGCAGCACGAAACTCGGCTTCGTGACGCCAGTGCACCACCACTTTGTGCCCCTGCAGCAGGCCGCAGGCAGCCAGCAGGAAGGCGCCATTGTCGACCCCCACCAGCTTGACACCCGCCTTGGCGGCCTGCCTGAGCAACGCCTGGTAACG > NC_002947/4043175‑4043458 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |