Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,200,212 | T→A | 8.9% | R276* (AGA→TGA) | PP_3690 ← | hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,200,212 | 0 | T | A | 8.9% | 116.7 / 3.8 | 45 | R276* (AGA→TGA) | PP_3690 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base T (18/23); new base A (2/2); total (20/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.04e-01 |
AAGCTGCATCACGGCTGGCACCGCTTGCTTGGAAATTGCGGCAAAATCGTTGTCCGTTCCGAGATCTTCAAAGTACGCCTTCAGAACGCCCTCGATACATACGCTAACGTTCAGTGCTGCCGAATCTATGCCTGCCTGCCAAGCTCTATTGAGCTTGTTCCAGCTGTCATAAAACACGCCTCCGTCACGCTCAAAAAATCTGACGAGTAGGCTAAAAACAGACCCGAAGAAGTCAGAAGCACAATTGAAGGGTATCTCGACAGGCGGAAGGAGTTGACGATTACTGAACTC > NC_002947/4200066‑4200356 | aaGCTCCATCACGGCTGGCACCGCTTGCTTGGAAATTGCGGCAAAATCGTTGTCCGTTCCGAGATCTTCAAAGTACGCCTTCAGAACGCCCTCGATACATACGCTAACGTTCAGTGCTGCCGAATCTATGCCTGCCTGCCAAGCTCTAt < 7:131890/149‑1 (MQ=255) aGCTGCATCACGGCTGGCACCGCTTGCTTGGAAATTGCGGCAAAATCGTTGTCCGTTCCGAGATCTTCAAAGTACGCCTTCAGAACGCCCTCGATACATACGCTAACGTTCAGTGCTGCCGAATCTATGCCTGCCTGCCAAGCTCTAtt < 3:52357/149‑1 (MQ=255) ctacATCACGGCTGGCACCGCTTGCTTGGAAATTGCGGCAAAATCGTTGTCCGTTCCGAGATCTTCAAAGTACGCCTTCAGAACGCCCTCGATACATACGCTAACGTTCAGTGCTGCCGAATCTATGCCTGCCTGCCAAGCTCTATTGa < 2:74486/146‑1 (MQ=255) cTGCATCACGGCGGGCACCGCTTGCTTGGAAATTGCGGCAAAATCGTTGTCCGTTCCGAGATCTTCAAAGTACGCCTTCAGAACGCCCTCGATACACACGCTAACGTTCAGTGCTGCCGAATCTATGCCTGCCTGCCAAGCTCTATTGa < 2:105710/149‑1 (MQ=255) tGCATCACGGCTGGCACCGCTTGCTTGGAAATTGCGGCAAAATCGTTGTCCGTTCCGAGATCTTCAAAGTACGCCTTCAGAACGCCCTCGATTCATACGCTAACGTTCAGTGCTGCCGAATCTATGCCTGCCTGCCAAGCTCTAtt > 2:54262/1‑146 (MQ=255) tCACGGCTGGCACCGCTTGCTTGGAAATTGCGGCAAAATCGTTGTCCGTTCCGAGATCTTCAAAGTACGCCTTCAGAACGCCCTCGATACATACGCTAACGTTCAGTGCTGCCGAATCTATGCCTGCCTGCCAAGCTCTATTGAGCTTg > 6:103377/1‑149 (MQ=255) tCACGGCTGGCACCGCTTGCTTGGAAATTGCGGCAAAATCGTTGTCCGTTCCGAGATCTTCAAAGTACGCCTTCAGAACGCCCTCGATACATACGCTAACGTTCAGTGCTGCCGAATCTATGCCTGCCTGCCAAGCTCTATTGAGCTTg > 2:316873/1‑149 (MQ=255) gCTGGCACCGCTTGCTTGGAAATTGCGGCAAAATCGTTGTCCGTTCCGAGATCTTCAAAGTACGCCTTCAGAACGCCCTCGATACATACGCTAACGTTCAGTGCTGCCGAATCTATGCCTGCCTGCCAAGCTCTATTGAGCTTGTTCCa < 1:288049/149‑1 (MQ=255) cttgGAAATTGCGGCAAAATCGTTGTCCGTTCCGAGATCTTCAAAGTACGCCTTCAGAACGCCCTCGATACATACGCTAACGTTCAGTGCTGCCGAATCTATGCCTGCCTGCCAAGCTCTATTGAGCTTGTTCCAGCTGTCATAAAac < 5:103377/148‑1 (MQ=255) ggAAATTGCGGCAAAATCGTTGTCCGTTCCGAGATCTTCAAAGTACGCCTTCAGAACGCCCTCGATACATACGCTAACGTTCAGTGCTGCCGAATCTATGCCTGCCTGCCAAGCTCTATTGAGCTTGTTCCAGCTGTCATAAAacac < 1:207520/147‑1 (MQ=255) aaTCGTTGTCCGTTCCGAGATCTTCAAAGTACGCCTTCAGAACGCCCTCGATACATACGCTAACGTTCAGTGCTGCCGAATCTATGCCTGCCTGCCAAGCTCTATTGAGCTTGTTCCAGCTGTCATAAAACACGCCTCCGTCACGCTc > 2:91569/1‑148 (MQ=255) gTTGTCCGTTCCGAGATCTTCAAAGTACGCCTTCAGAACGCCCTCGATACATACGCTAACGTTCAGTGCTGCCGAATCTATGCCTGCCTGCCAAGCTCTATTGAGCTTGTTCCAGCTGTCATAAAACACGCCTCCGTCACGCTCaaaaa < 8:171714/149‑1 (MQ=255) cGAGAGCTTCAAAGTTCGCCTTCTGAACGCCCTCGATACATAGGCTAAGCTTCAGTGCTGCCGAATCTATGCCTGCCTGCCATGCTCTATTGAGCTTGTTCCAGCTGTCATAAAACACGCCTCCGTCACGCTCAAAAAATCTGACGAGt < 4:151853/149‑1 (MQ=255) ttCAAAGTACGCCTTCAGAACGCCCTCGATACATACGCTAACGTTCAGTGCTGCCGAATCTATGCCTGCCTGCCAAGCTCTATTGAGCTTGTTCCAGCTGTCATAAAACACGCCTCCGTCACGCTCAAAAAATCTGACGAGTAGGCTa > 2:62921/1‑148 (MQ=255) ttCAAAGTACGCCTTCAGAACGCCCTCGATACATACGCTAACGTTCAGTGCTGCCGAATCTATGCCTGCCTGCCAAGCTCAATAGAGCtt < 4:158290/90‑1 (MQ=255) ttCAAAGTACGCCTTCAGAACGCCCTCGATACATACGCTAACGTTCAGTGCTGCCGAATCTATGCCTGCCTGCCAAGCTCAATAGAGCtt > 3:158290/1‑90 (MQ=255) tCAAAGTACGCCTTCAGAACGCCCTCGATACATACGCTAACGTTCAGTGCTGCCGAATCTATGCCTGCCTGCCAAGCTCTATTGAGCTTGTTCCAGCTGTCATAAAACACGCCTCCGTCACGCTCAAAAAATCTGACGAGTAGGCTaa > 1:6327/1‑148 (MQ=255) cAAAGTACGCCTTCAGAACGCCCTCGATACATACGCTAACGTTCAGTGCTGCCGAATCTATGCCTGCCTGCCAAGCTCTATTGAGCTTGTTCCAGCTGTCATAAAACACGCCTCCGTCACGCTCAAAAAATCTGACGAGTa > 8:96936/1‑141 (MQ=255) cAAAGTACGCCTTCAGAACGCCCTCGATACATACGCTAACGTTCAGTGCTGCCGAATCTATGCCTGCCTGCCAAGCTCTATTGAGCTTGTTCCAGCTGTCATAAAACACGCCTCCGTCACGCTCAAAAAATCTGACGAGTa < 7:96936/141‑1 (MQ=255) aCGCCTTCAGAACGCCCTCGATACATACGCTAACGTTCAGTGCTGCCGAATCTATGCCTGCCTGCCAAGCTCTATTGAGCTTGTTCCAGCTGTCATAAAACACGCCTCCGTCACGCTCAAAAAATCTGACGAGTAGGCTAAAAACAGAc > 3:269385/1‑149 (MQ=255) tCAGAACGCCCTCGATACATACGCTAACGTTCAGTGCTGCCGAATCTATGCCTGCCTGCCAAGCTCTATTGAGCTTGTTCCAGCTGTCATAAAACACGCCTCCGTCACGCTCAAAAAATCTGACGAGTAGGCTAAAAAAAGACCCg > 2:43715/1‑146 (MQ=255) ccTCGATACATACGCTAACGTTCAGTGCTGCCGAATCTATGCCTGCCTGCCAAGCTCTATTGAGCTTGTTCCAGCTGTCATAAAACACGCCTCCGTCACGCTCAAAAAATCTGACGAGTAGGCTAAAAACAGACCCGAAGAAGTCAGaa < 1:91569/149‑1 (MQ=255) ccTCGATACATACGCTAACGTTCAGTGCTGCAGAATCTATGCCTGCCTCCCAAGCTCTATTGAGCTTGATCCAGCTCTCATAAAACACGCCTCCGTCACGCTCAAAAAATCTCACCAGTAGCCTAAACACAGAACCAaagaagaaaga > 6:252701/1‑143 (MQ=255) cTCGATACATACGCTAACGTTCAGTGCTGCCGAATCTATGCCTGCCTGCCAAGCTCTATTGAGATTGTTCCAGCTGTCATACAACACGCCTCCGTCACGCTCAAAAAATCTGACGACTAGGCTAAAAACAGACCCGAAGAAGTCAGAAg > 1:243029/1‑149 (MQ=255) tacatacGCTAACGTTCAGTGCTGCCGAATCTATGCCTGCCTGCCAAGCTCTATTGAGCTTGTTCCAGCTGTCATAAAACACGCCTCCGTCACGCTCAAAAAATCTGACGAGTAGGCTAAAAACAGACCCGAAGAAGTCAGAAGCACaa < 4:269385/149‑1 (MQ=255) cGCTAACGTTCAGTGCTGCCGAATCTATGCCTGCCTGCCAAGCTCTATTGAGCTTGTTCCAGCTGTCATAAAACACGCCTCCGTCAAGCTCAAAAAATCTGACGAGTAGGCTAAAAACAGACCCGAAGAAGTCAGAAGCACAATTGaa < 5:266281/148‑1 (MQ=255) gCTAACGTTCAGTGCTGCCGAATCTATGCCTGCCTGCCAAGCTCTATTGAGCTTGTTCCAGCTGTCATAAAACACGCCTCCGTCACGCTCAAAAAATCTGACGAGTAGGCTAAAAACAGACCCGAAGAAGTCAGAAGCACAATTGAAgg < 1:54262/149‑1 (MQ=255) tAACGTTCAGTGCTGCCGAATCTATGCCTGCCTGCCAAGCTCTATTGAGCTTGTTCCAGCTGTCATAAAACACGCCTCCGTCACGCTCAAAAAATCTGACGAGTAGGCTAAAAACAGACCCGAAGAAGTCAGaa < 1:203788/134‑1 (MQ=255) tAACGTTCAGTGCTGCCGAATCTATGCCTGCCTGCCAAGCTCTATTGAGCTTGTTCCAGCTGTCATAAAACACGCCTCCGTCACGCTCAAAAAATCTGACGAGTAGGCTAAAAACAGACCCGAAGAAGTCAGaa > 2:203788/1‑134 (MQ=255) aCGTTCAGTGCTGCCGAATCTATGCCTGCCTGCCAAGCTCTATTGTGCTTGTTCCAGCTGTCATAAAACACGCCTCCTTCACGCTCAAAAAATCTTACGAGTAGGCTAAAAACAGAGCCGAAGAAGTCAGAAGCACAATTGAAGTGTAt < 1:43715/149‑1 (MQ=255) aCGTTCAGTGCTGCCGAATCTATGCCTGCCTGCCAAGCTCTATTGAGCTTGTTCCAGCTGTCATAAAACACGCCTCCGTCACGCTCAAAAAATCTGACGAGTAGGCTAAAAACAGACCCGAAGAAGTCAGAAGCACAATTGAAGGGt < 5:28122/147‑1 (MQ=255) gTTCAGTGCTGCCGAATCTATGCCTGCCTGCCAAGCTCTATTGAGCTTGTTCCAGCTGTCATAAAACACGCCTCCGTCACGCTCAAAAAATCTGACGAGTAGGCTAAAAACAGACCCGAAGAAGTCAGAAGCACAATTGAAGGGTAtct < 2:6327/149‑1 (MQ=255) tgctgcCGAATCTATGCCTGCCTGCCAAGCTCTATTGAGCTTGTTCCAGCTGTCATAAAACACGCCTCCGTCACGCTCAAAAAATCTGACGAGTAGGCTAAAAACAGACCCgaagaa < 7:80977/117‑1 (MQ=255) tgctgcCGAATCTATGCCTGCCTGCCAAGCTCTATTGAGCTTGTTCCAGCTGTCATAAAACACGCCTCCGTCACGCTCAAAAAATCTGACGAGTAGGCTAAAAACAGACCCgaagaa > 8:80977/1‑117 (MQ=255) tgcCGAATCTATGCCTGCCTGCCAAGCTCTATTGAGCTTGTTCCAGCTGTCATAAAACACGCCTCCGTCACGCTCAAAAAATCTGACGAGTAGGCTAAAAACAGACCCGAAGAAGTCAGAAGCACAATTGAAgg < 7:2650/134‑1 (MQ=255) tgcCGAATCTATGCCTGCCTGCCAAGCTCTATTGAGCTTGTTCCAGCTGTCATAAAACACGCCTCCGTCACGCTCAAAAAATCTGACGAGTAGGCTAAAAACAGACCCGAAGAAGTCAGAAGCACAATTGAAgg > 8:2650/1‑134 (MQ=255) gAATCTATGCCTGCCTGCCAAGCTCTATTGAGCTTGTTCCAGCTGTCATAAAACACGCCTCCGTCACGCTCAAAAAATCTGACGAGTAGGCTAAAAACAGACCCGAAGAAGTCAGAAGca > 5:62200/1‑120 (MQ=255) gAATCTATGCCTGCCTGCCAAGCTCTATTGAGCTTGTTCCAGCTGTCATAAAACACGCCTCCGTCACGCTCAAAAAATCTGACGAGTAGGCTAAAAACAGACCCGAAGAAGTCAGAAGca < 6:62200/120‑1 (MQ=255) aTGCCTGCATTCCAATCTCTTTTGAGCTTGTTCCAGCTGTAATAAAACACGGCTCCGTCACGCTAAAAAAATGTGACGTTTAGGCTAAAAACTGACCCGAAGAAGTGAGAAGCACAATTGAAGGGTATCTCGACAGGCGGAAGGAGtt < 5:252701/148‑1 (MQ=255) ccAAGCTCTATTGAGCTTGTTCCAGCTGTCATAAAACACGCCTCCGTCACGCTCAAAAAATCTGACGAGTAGGCTAAAAACAGACCCGTAGAAGTCAGAAGCACAATTGAAGGGTATCTCGACAGGCGGAAGGAGTTGACGATTACTg > 8:124707/1‑148 (MQ=255) acAAGCTCAATAGAGCTTGTTCCAGCTGTCATAAAACACGCCTCCGTCACGCTCAAAAAATCTGACGAGTAGGCTAAAAACAGACCCGAAGAAGTCAGAAGCACAATTGAAGGGTATCTCGACAGGCGGAAg < 3:120141/131‑1 (MQ=255) acAAGCTCAATAGAGCTTGTTCCAGCTGTCATAAAACACGCCTCCGTCACGCTCAAAAAATCTGACGAGTAGGCTAAAAACAGACCCGAAGAAGTCAGAAGCACAATTGAAGCGTATCTCGACAGGCGGAAg > 4:120141/2‑132 (MQ=255) cAAGCTCTATTGAGCTTGTTCCAGCTGTCATAAAACACGCCTCCGTCACGCTCAAAAAATCTGACGAGTAGGCTAAAAACAGACCCGAAGAAGTCAGAAGCACAATTGAAGGGTATCTCGACAGGCGGAAGGAGTTGACGATTACTGa > 8:238658/1‑148 (MQ=255) aaGCTCTATTGAGCTTGTTCCAGCTGTCATAAAACACGCCTCCGTCACGCTCAAAAAATCTGACGAGTAGGCTAAAAACAGACCCGAAGAAGTCAGAAGCACAATTGAAGGGTATCTCGACAGGCGGAAGGAGTTGACGATTACTGAAc < 1:316873/149‑1 (MQ=255) aGCTCTATTGAGCTTGTTCCAGCTGTCATAAAACACGCCTCCGTCACGCTCAAAAAATCTGACGAGTAGGCTAAAAACAGACCCGAAGAAGTCAGAAGCACAATTGAAGGGTATCTCGACAGGCGGAAGGAGTTGACGATTACTGAACt > 4:26417/1‑149 (MQ=255) ctctATTGAGCTTTTTCCAGCTGTCATAAAACACGCCTCCGTCACGCTCAAAAAATCTGACGAGTAGGATAAAAACAGACCCGAAGAAGTCAGAAGCACAATTGAAGGGTATCTCTACAGGCGGAAGGAGTTGACGATTAATGaaata > 6:213020/1‑145 (MQ=255) ctctATTGAGCTAGTTCCAGCTGTCATAAAACACGCCTCCGTCACGCTCAAAAAATCTGACGAGTAGGCTAAAAACAGACCCGAAGAAGTCAGAAGCACAATTGAAGGGTATCTCGACAGGCGGAAGCAGTTGACGATTACTGAAATc > 6:208431/1‑148 (MQ=255) | AAGCTGCATCACGGCTGGCACCGCTTGCTTGGAAATTGCGGCAAAATCGTTGTCCGTTCCGAGATCTTCAAAGTACGCCTTCAGAACGCCCTCGATACATACGCTAACGTTCAGTGCTGCCGAATCTATGCCTGCCTGCCAAGCTCTATTGAGCTTGTTCCAGCTGTCATAAAACACGCCTCCGTCACGCTCAAAAAATCTGACGAGTAGGCTAAAAACAGACCCGAAGAAGTCAGAAGCACAATTGAAGGGTATCTCGACAGGCGGAAGGAGTTGACGATTACTGAACTC > NC_002947/4200066‑4200356 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |