Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 4,385,287 A→T 6.0% V83V (GTT→GTA)  PP_3860 ← FluMu protein gp47

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029474,385,2870AT 6.0% 205.5 / 2.5 71V83V (GTT→GTA) PP_3860FluMu protein gp47
Reads supporting (aligned to +/- strand):  ref base A (29/36);  new base T (2/2);  total (33/38)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.92e-01

GCGCACCGGCACCTGCGCCGTACCATCCACCAGACGCGTCGTTACGGTCACGACGTAGCGGCGGCCGTCCTGATGCTGGTAGACCATACCGGCATCCACCAAGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAGGTCGCCGGGTGGGACTGCCGCGCGATCCACTCCTGATGGCCATACAGACCGTAGGCGGCGCCACTAAGAACCCGCGAAGCCA  >  NC_002947/4385143‑4385435
                                                                                                                                                |                                                                                                                                                    
gcgcACCGGCACCTGCGCCGTACCATCCACCAGACGCGTCGTTACGGTCACGACGTAGCGGCGGCCGTCCTGATGCTGGTAGACCATACCGGCATCCACCAAGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAg                                                                                                                                                  >  4:151105/1‑149 (MQ=255)
gcgcACCGGCACCTGCGCCGTACCATCCACCAGACGCGTCGTTACGGTCACGACGTAGCGGCGGCCGTCCTGATGCTGGTAGACCATACCGGCATCCACCAAGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAg                                                                                                                                                  >  1:302022/1‑149 (MQ=255)
  gcACCGGCACCTGCGCCGTACCATCCACCAGACGCGTCGTTACGGTCACGACGTAGCGGCGGCCGTCCTGATGCTGGTAGACCATACCGGCATCCACCAAGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAgcc                                                                                                                                                >  5:88253/1‑149 (MQ=255)
    aCCGGCACCTGCGCCGTACCATCCACCAGACGCGTCGTTACGGTCACGACGTAGCGGCGGCCGTCCTGATGCTGGTAGACCATACCGGCATCCACCAAGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAgccgc                                                                                                                                              <  8:110835/149‑1 (MQ=255)
    aCCGGCACCTGCGCCGTACCATCCACCAGACGCGTCGTTACGGTCACGACGTAGCGGCGGCCGTCCTGATGCTGGTAGACCATACCGGCATCCACCAAGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAgccgc                                                                                                                                              >  7:110835/1‑149 (MQ=255)
      cGGCCCCTGTGCCGTACCATCCCCCAGACGCGTCGTTACGGTCACGACGTAGCGGCGGCCGGCCTGATGCTGGTAGACCATACCGGCATCCACCAAGGCGGTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGGACCGCCGCCt                                                                                                                                            >  8:139879/1‑149 (MQ=255)
               cgcCGTACCATCCACCAGACGCGTCGTTACGGTCACGACGTAGCGGCGGCCGTCCTGATGCTGGTAGACCATACCGGCATCCACCAAGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAGCCGCCTTGCGccc                                                                                                                                     <  8:228899/147‑1 (MQ=255)
                 ccGTACCATCCACCAGACGCGTCGTTACGGTCACGACGTAGCGGCGGCCGTCCTGATGCTGGTAGACCATACCGGCATCCACCAAGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTcc                                                                                                                                 <  6:133961/149‑1 (MQ=255)
                  tttACCATCCTCCTTACGCGTGGTTACGGTCACGACGTAGCGGCGGCCGTCCTGATGCTGGTAGACCATACCGGCATCCACCAAGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCGGGAACATCCGCCTTGCGCCCGTCCt                                                                                                                                <  6:316019/147‑1 (MQ=255)
                    tACCATCCACCATACGCGTCGTTACGGTCACGACGTAGCGGCGGCCGTCCTGATGCTGGTAGACCATACCGGCATCAACAAATGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCAGGAACAGCCGCCTTGCGCCCGTACTTa                                                                                                                              >  5:316019/1‑149 (MQ=255)
                    tACCATCCACCAGACGCGTCGTTACGGTCACGACGTAGCGGCGGCCGTCCTGATGCTGGTAGACCATACCGGCATCCACCAAGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGGTGGTCCcgccgcag                                                                                                                                            >  2:19880/1‑133 (MQ=255)
                    tACCATCCACCAGACGCGTCGTTACGGTCACGACGTAGCGGCGGCCGTCCTGATGCTGGTAGACCATACCGGCATCCACCAAGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGTTCCAgccgcag                                                                                                                                            <  1:19880/135‑3 (MQ=255)
                         tCCACCAGACGCGTCGTTACGGTCACGACGTAGCGGCGGCCGTCCTGATGCTGGTAGACCATACCGGCATCCACCAAGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGCACAGCCGCCTTGCGCCCGTCCTTACGgcg                                                                                                                         >  2:250046/1‑149 (MQ=255)
                         tCCACCAGACGCGTCGTTACGGTCACGACGTAGCGGCGGCCGTCCTGATGCTGGTAGACCATACCGGCATCCACCAAGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGgcg                                                                                                                         >  2:253849/1‑149 (MQ=255)
                                gACGCGTCGTTACGGTCACGACGTAGCGGCGGCCGTCCTGATGCTGGTAGACCCTACCGGCATCCACCAAGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCg                                                                                                                  >  6:92230/1‑149 (MQ=255)
                                   acgtcgtGACCGTAACGACGTAGCGGCGGCCGTCCTGATGCTGGTAGACCATACCGGCATCCACCAAGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGcc                                                                                                               >  8:153925/2‑149 (MQ=255)
                                        gtTACGGTCAGGTCGTAGCGGCGGCCGTGCTGATGGTGGTAGACCATACCGGCATCCACCATGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCAttt                                                                                                          <  7:257205/149‑1 (MQ=255)
                                          tACGGTCACGACGTAGCGGCGGCCGTCCTGATGCTGGTAGACCATACCGGCATCCACCAAGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCAttt                                                                                                          >  3:249951/1‑147 (MQ=255)
                                               tCACGACGTAGCGGCGGCCGTCCTGATGCTGGTAGACCATACCGGCATCCACCAAGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTcagcag                                                                                                    >  1:137545/1‑148 (MQ=255)
                                               tCACGACGTAGCGGCGGCCGTCCTGATGCTGGTAGACCATACCGGCATCCACCAAGGCGTTATAAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCagcagc                                                                                                   <  5:157792/149‑1 (MQ=255)
                                               tCACGACGTAGCGGCGGCCGGCCTGATGCTGGTAGACCATACCGGCATCCACCAAGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCagcagc                                                                                                   <  2:291725/149‑1 (MQ=255)
                                                  cgacgTAGCGGCGGCCGTCCTGATGCTAGTAGACCATACCGGCATCCACCAAGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCAtc                                                                                                >  4:12227/1‑149 (MQ=255)
                                                         gcggcgGCCGTCCTGATGCTGGTAGACCATACCGGCATCCACCAAGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCAt                                                                                         <  2:302022/149‑1 (MQ=255)
                                                             cggcCGTCCTGATGCTGGTAGACCATACCGGCATCCACCAAGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCa                                                                                     <  7:139879/149‑1 (MQ=255)
                                                              ggcCGTCCTGATGCTGGTAGACCATACCGGCATCCACCAAGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACTGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAg                                                                                    <  1:250046/149‑1 (MQ=255)
                                                              ggcCGTCCTGATGCTGGTAGACCATACCGGCATCCACCAAGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAg                                                                                    <  1:253849/149‑1 (MQ=255)
                                                                    ccTGATGCTGGTAGACCATACCGGCATCCACCAAGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAGGTCGcc                                                                              >  7:72998/1‑149 (MQ=255)
                                                                        aTGCTGGTAGACCATACCGGCATCCACCAAGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAGGTCGCCGGGt                                                                          >  2:223156/1‑149 (MQ=255)
                                                                           cTGGTAGACCATACCGGCATCCACCAAGGCGTTATTAGCGCCGCTGACGACAAGGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTACGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAGGTCGCCGGGTgg                                                                        <  6:88253/148‑1 (MQ=255)
                                                                            tGGTAGACCATACCGGCATCCACCAAGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAgg                                                                                   <  4:154095/136‑1 (MQ=255)
                                                                            tGGTAGACCATACCGGCATCCACCAAGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAgg                                                                                   >  3:154095/1‑136 (MQ=255)
                                                                              gTAGACCATACCGGCATCCACCAAGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTca                                                                                                        <  3:67334/113‑1 (MQ=255)
                                                                              gTAGACCATACCGGCATCCACCAAGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTca                                                                                                        >  4:67334/1‑113 (MQ=255)
                                                                              gTAGACCATACCGGCATCCACCAAGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAGGTCGCCGGGTGGGa                                                                      <  8:125690/147‑1 (MQ=255)
                                                                              gTAGACCATACCGGCATCCACCAAGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAGGTCGCCGGGTGGGAc                                                                     <  3:151105/148‑1 (MQ=255)
                                                                                    cATACCGGCATCCACCAAGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAGGTCGCCggg                                                                           <  3:65422/136‑1 (MQ=255)
                                                                                    cATACCGGCATCCACCAAGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAGGTCGCCggg                                                                           >  4:65422/1‑136 (MQ=255)
                                                                                       aCCGGCATCCACCAAGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAGCCGCCGTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAGGTCGCCGGGTg                                                                         <  1:136842/135‑1 (MQ=255)
                                                                                       aCCGGCATCCACCAAGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAGCCGCCGTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAGGTCGCCGGGTg                                                                         >  2:136842/1‑135 (MQ=255)
                                                                                         cgtcATCCACCAAGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAGGTCGCCGGGt                                                                          <  5:74479/129‑1 (MQ=255)
                                                                                         cGGCATCCACCAAGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAGGTCGCCGGGt                                                                          >  6:74479/1‑132 (MQ=255)
                                                                                         cGGCATCCACCAAGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAGGTCGCCGGGTGGGACTGCCGCACGATc                                                         <  8:126028/149‑1 (MQ=255)
                                                                                          ggCATCCACCAAGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAGGTCACCGGGTGGGACTGCCGCGCGATc                                                         >  5:302823/1‑148 (MQ=255)
                                                                                           gCATCCACCAAGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAGGTCGCCGGGTGGGACTGCCGCGCGATCCa                                                       <  3:12227/149‑1 (MQ=255)
                                                                                             aTCCACCAAGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAGGTCGCCGGGTGGGACTGCCGCGCGATCCACt                                                     >  2:117228/1‑149 (MQ=255)
                                                                                              tCCACCAAGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAGGTCGCCGGGTGGGACTGCCGCGCGATCCACTc                                                    <  8:72998/149‑1 (MQ=255)
                                                                                                 accaAGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAGGTCGCCGGGTGGGACTGCCGCGCGATCCACTCCt                                                  >  1:75747/1‑148 (MQ=255)
                                                                                                   caAGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAGGTCGCCGGGTGGGACTGCCGCGCGATCCACTCCTGAt                                               <  2:137545/149‑1 (MQ=255)
                                                                                                   caAGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAGGTCGCCGGGTGGGACTGCCGCGCGATCCACTCCTGAt                                               <  5:92230/149‑1 (MQ=255)
                                                                                                    aaGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAGGTCGCCGGGTGGGACTGCCGCGCGATCCACTCCTGATg                                              <  7:153925/149‑1 (MQ=255)
                                                                                                    aaGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAGGTCGCCGGGTGGGACTGCCGCGCGATCCACTCCTGATg                                              <  1:117228/149‑1 (MQ=255)
                                                                                                      ggCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAGGTCGCCGGGTGGGACTGCCGCGCGATCCACTCCTGATGGc                                            <  2:75747/149‑1 (MQ=255)
                                                                                                       gCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAGGTCGCCGGGTGGGACTGCCGCGCGATCCACTCCTGATGGcc                                           <  3:28784/149‑1 (MQ=255)
                                                                                                        cGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAGGTCGCCGGGTGGGACTGCCGCGCGATCCACTCCTGATGGCCa                                          >  3:147212/1‑149 (MQ=255)
                                                                                                               aGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAGGTCGCCGGGTGGGACTGCCGCGCGATCCACTCCTGATGGCCATACAGa                                    <  4:249951/148‑1 (MQ=255)
                                                                                                                      cTGACGACAATGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAGGTCGCCGGGTGGGACTGCCGCGCGATCCACTCCTGATGGCCATACAGACCGTAggc                            >  3:88772/1‑149 (MQ=255)
                                                                                                                           gacAATGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAGGTCGCCGGGTGGGACTGCCGCGCGATCCACTCCTGATGGCCATa                                        >  3:192115/1‑132 (MQ=255)
                                                                                                                           gacAATGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAGGTCGCCGGGTGGGACTGCCGCGCGATCCACTCCTGATGGCCATa                                        <  4:192115/132‑1 (MQ=255)
                                                                                                                           gacAATGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAGGTCGCCGGGTGGGACTGCCGCGCGATCCACTCCTGATGGCCATACAGACCGTAGGCGgcgc                       >  7:28004/1‑149 (MQ=255)
                                                                                                                              aaTGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAGGTCGCCGGGTGGGACTGCCGCGCGATCCACTCCTGATGGCCATACAGACCGTAGGCGGCGCCAc                    <  1:223156/149‑1 (MQ=255)
                                                                                                                                 ggggCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAGGTCGCCGGGTGGGACTGCCGCGCGATCCACTCCTGATGGCCATACAGACCGTAGGCGGCGCCACt                   >  8:91859/1‑147 (MQ=255)
                                                                                                                                   ggCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAGGTCGCCGGGt                                                                          <  1:231588/90‑1 (MQ=255)
                                                                                                                                   ggCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAGGTCGCCGGGt                                                                          >  2:231588/1‑90 (MQ=255)
                                                                                                                                   ggCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAGGTCGCCGGGTGGGACTGCCGCGCGATCCACTCCTGATGGCCATACAGACCGTAGGCGGCGCCACTAAGa               <  4:147212/149‑1 (MQ=255)
                                                                                                                                       ggCGGCTGTTCCAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAGGTCGCCGGGTGGGACTGCCGCGCGATCCACTCCTGATGGCCATACAGACCGTAGGCGGCGCCACTaa                 <  7:261221/142‑1 (MQ=255)
                                                                                                                                       ggCGGCTGTTCCAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAGGTCGCCGGGTGGGACTGCCGCGCGATCCACTCCTGATGGCCATACAGACCGTAGGCGGCGCCACTaa                 >  8:261221/2‑143 (MQ=255)
                                                                                                                                         cGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAGGTCGCCg                                                                             >  2:161173/1‑81 (MQ=255)
                                                                                                                                         cGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAGGTCGCCg                                                                             <  1:161173/81‑1 (MQ=255)
                                                                                                                                            cTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAGGTCGCCGGGTGGGACTGCCGCGCGATCCACTCCTGATGGCCATACAGACCGTAGGCGGCGCCACTAAGAACCCGCGaa      <  7:91859/149‑1 (MQ=255)
                                                                                                                                            cTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAGGTCGCCGGGTGGGACTGCCGCGCGATCCACTCCTGATGGCCATACAGACCGTAGGCGGCGCCACTAAGAACCCGCGaa      <  4:88772/149‑1 (MQ=255)
                                                                                                                                             tGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAGGTCGCCGGGTGGGACTGCCGCGCGATCCACTCCTGATGGCCATACAGACCGTAGGCGGCGCCACTAAGAACCCGCGAAg     >  6:284442/1‑149 (MQ=255)
                                                                                                                                                aaCAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAGGTCGCCGGGTGGGACTGCCGCGCGATCCACTCCTGATGGCCATACAGACCGTAGGCGGCGCCACTAAGAACCCGCGAAGCCa  >  3:1745/1‑149 (MQ=255)
                                                                                                                                                |                                                                                                                                                    
GCGCACCGGCACCTGCGCCGTACCATCCACCAGACGCGTCGTTACGGTCACGACGTAGCGGCGGCCGTCCTGATGCTGGTAGACCATACCGGCATCCACCAAGGCGTTATTAGCGCCGCTGACGACAATGGGGCCTGCGGCTGGAACAGCCGCCTTGCGCCCGTCCTTAAGGCGCCATTCGGCCCATTTCAGCAGCATCTCTTCATCGCAGGTCGCCGGGTGGGACTGCCGCGCGATCCACTCCTGATGGCCATACAGACCGTAGGCGGCGCCACTAAGAACCCGCGAAGCCA  >  NC_002947/4385143‑4385435

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑