Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,448,507 | C→T | 6.8% | L208L (CTG→TTG) | nicX → | 2,5‑dihydroxypyridine 5,6‑dioxygenase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,448,507 | 0 | C | T | 6.8% | 177.1 / 2.0 | 59 | L208L (CTG→TTG) | nicX | 2,5‑dihydroxypyridine 5,6‑dioxygenase |
Reads supporting (aligned to +/- strand): ref base C (30/25); new base T (2/2); total (32/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.32e-01 |
AAGGCCGGTAGCGACTTCCACGCCCCGCTCGGCCAGTACCCGGCCGTGACTGAGTACGGCTATGCCGACGAACCGGGGCGCTGGGACCACTGGCCCAGCGGCTTTCTGTTCACCTGGCCGAACGAGGACAGCGCCGAGGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAACTATTGCCGCGAGCGCATCACCCTGGAAATCGAAAAAGGCTTCATCACCGGCATACATGGCGGCTTCGAGGCCGAGTACCTGCGTGACTACATGAAA > NC_002947/4448363‑4448644 | aaGGCCGGTAGCGACTTCCACGCCCCGCTCGGCCAGTACCCGGCCGTGACTGAGTACGGCTATGCCGACGAACCGGGGCGCTGGGACCACTGGCCCAGCGGCTTTCTGTTCACCTGGCCGAACGAGGACAGCGCCGAGGGCACGCTGGt > 5:70099/1‑149 (MQ=255) gCCGGTAGCGACTTCCACGCCCCGCTCGGCCAGTACCCGGCCGTGACTGAGTACGGCTATGCCGACGAACCGGGGCGCTGGGACCACTGGCCCAGCGGCTTTCTGTTCACCTGGCCGAACGAGGACAGCGCCGAGGGCACGCTGGTGCt < 2:2701/149‑1 (MQ=255) ccACGCCCCGCTCGGCCAGTACCCGGCCGTGACTGAGTACGGCTATGCCGACGAACCGGGGCGCTGGGACCACTGGCCCAGCGGCTTTCTGTTCACCTGGCCGAACGAGGACAGCGCCGAGGGCACGc < 4:287759/128‑1 (MQ=255) ccACGCCCCGCTCGGCCAGTACCCGGCCGTGACTGAGTACGGCTATGCCGACGAACCGGGGCGCTGGGACCACTGGCCCAGCGGCTTTCTGTTCACCTGGCCGAACGAGGACAGCGCCGAGGGCACGc > 3:287759/1‑128 (MQ=255) ccACGCCCCGCTCGGCCAGTACCCGGCCGTGACTGAGTACGGCTATGCCGACGAACCGGGGCGCTGGGACCACTGGCCCAGCGGCTTTCTGTTCACCTGGCCGAACGAGGACAGCGCCGAGGGCACGCTGGTGCTGGACGt < 4:106726/141‑1 (MQ=255) ccACGCCCCGCTCGGCCAGTACCCGGCCGTGACTGAGTACGGCTATGCCGACGAACCGGGGCGCTGGGACCACTGGCCCAGCGGCTTTCTGTTCACCTGGCCGAACGAGGACAGCGCCGAGGGCACGCTGGTGCTGGACGt > 3:106726/1‑141 (MQ=255) cACGCCCCGCTCGGCCAGTACCCGGCCGTGACTGAGTACGGCTATGCCGACGAACCGGGGCGCTGGGACCACTGGCCCAGCGGCTTTCTGTTCACCTGGCCGAACGAGGACAGCGCCGAGGGCACGCTGGTGCTGGACGTG‑GGTGAcat > 6:115380/1‑149 (MQ=255) cACGCCCCGCTCGGCCAGTACCCGGCCGTGACTGAGTACGGCTATGCCGACGAACCGGGGCGCTGGGACCACTGGCCCAGCGGCTTTCTGTTCACCTGGCCGAACGAGGACAGCGCCGAGGGCACGCTGGTGCTGGACGTG‑GGTGAca > 8:99458/1‑148 (MQ=255) ccccGCTCGGCCAGTACCCGGCCGTGACTGAGTACGGCTATGCCGACGAACCGGGGCGCTGGGACCACTGGCCCAGCGGCTTTCTGTTCACCTGGCCGAACGAGGACAGCGCCGAGGGCACGCTGGTGCTGGACGTG‑GGTGACatcatc < 6:70099/149‑1 (MQ=255) ccGCTCGGCCAGTACCCGGCCGTGACTGAGTACTGCTATGCCGACGAACCGGGGCGCTGGGACCACTGGCCCAGCGGCTTTCTGTTCACCTGGCCGAACGAGGACAGCGCCGAGGGCACGCTGGTGCTGGACGTG‑GGt < 8:112481/138‑1 (MQ=255) ccGCTCGGCCAGTACCCGGCCGTGACTGAGTACGGCTATGCCGACGAACCGGGGCGCTGGGACCACTGGCCCAGCGGCTTTCTGTTCACCTGGCCGAACGAGGACAGCGCCGAGGGCACGCTGGTGCTGGACGTG‑GGt > 7:112481/1‑138 (MQ=255) ccGCTCGGCCAGTACCCGGCCGTGACTGAGTACGGCTATGCCGACGAACCGGGGCGCTGGGACCACTGGCCCAGCGGCTTTCTGTTCACCTGGCCGAACGAGGACAGCGCCGAGGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCt > 6:97877/1‑149 (MQ=255) ccGGCCGTGACTGAGTACGGCTATGCCGACGAACCGGGGCGCTGGGACCACTGGCCCAGCGGCTTTCTGTTCACCTGGCCGAACGAGGACAGCGCCGAGGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAACt > 1:271188/1‑148 (MQ=255) cGGCCGTGACTGAGTACGGCTATGCCGACGAACCGGGGCGCTGGGACCACTGGCCCAGCGGCTTTCTGTTCACCTGGCCGAACGAGGACAGCGCCGAGGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAACTAt < 3:130537/149‑1 (MQ=255) ggCCGTGACTGAGTACGGCTATGCCGACGAACCGGGGCGCTGGGACCACTGGCCCAGCGGCTTTCTGTTCACCTGGCCGAACGAGGACAGCGCCGAGGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAACTAtt < 7:82960/149‑1 (MQ=255) aGTACGGCTATGCCGACGAACCGGGGCGCTGGGACCACTGGCCCAGCGGCTTTCTGTTCACCTGGCCGAACGAGGACAGCGCCGAGGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAACTATTGCCGCGAgcgc < 4:48019/149‑1 (MQ=255) gTACGGCTATGCCGACGAACCGGGGCGCTGGGACCACTGGCCCAGCGGCTTTCTGTTCACCTGGCCGAACGAGGACAGCGCCGAGGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAACTATTGCCGCGAGCGCa > 7:94915/1‑149 (MQ=255) aTGCCGACGAACCGGGGCGCTGGGACCACTGGCCCAGCGGCTTTCTGTTCACCTGGCCGAACGAGGACAGCGCCGAGGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAACAATTGCCGCGAGCGCATCACCCTg > 4:280768/1‑149 (MQ=255) tGCCGACGAACCGGGGCGCTGGGACCACTGGCCCAGCGGCTTTCTGTTCACCTGGCCGAACGAGGACAGCGCCGAGGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAACTATTGCCGCGAGCGCATCACCCTg > 7:293896/1‑148 (MQ=255) ccGACGAACCGGGGCGCTGGGACCACTGGCCCAGCGGCTTTCTGTTCACCTGGCCGAACGAGGACAGCGCCGAGGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCaa < 7:199666/118‑1 (MQ=255) ccGACGAACCGGGGCGCTGGGACCACTGGCCCAGCGGCTTTCTGTTCACCTGGCCGAACGAGGACAGCGCCGAGGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCaa > 8:199666/1‑118 (MQ=255) cgacgaACCGGGGCGCTGGGACCACTGGCCCAGCGGCTTTCTGTTCACCTGGCCGAACGAGGACAGCGCCGAGGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAACTATTGCCGCGAGCGCATCACCCTGGaaa > 3:227293/1‑149 (MQ=255) cgacgaACCGGGGCGCTGGGACCACTGGCCCAGCGGCTTTCTGTTCACCTGGCCGAACGAGGACAGCGCCGAGGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAACTATTGCCGCGAGCGCATCACCCTGGaa > 7:195236/1‑148 (MQ=255) gacgaACCGGGGCGCTGGGACCACTGGCCCAGCGGCTTTCTGTTCACCTGGCCGAACGAGGACAGCGCCGAGGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAACTATTGCCGCGAGCGCATCACCCTGGAAAt > 6:42161/1‑149 (MQ=255) gacgaACCGGGGCGCTGGGACCACTGGCCCAGCGGCTTTCTGTTCACCTGGCCGAACGAGGACAGCGCCGAGGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAACTATTGCCGCGAGCGCATCACCCTGGAAAt < 2:271188/149‑1 (MQ=255) acgaACCGGGGCGCTGGGACCACTGGCCCAGCGGCTTTCTGTTCACCTGGCCGAACGAGGACAGCGCCGAGGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAACTATTGCCGCGAGCGCATCACCCTGGAAATc < 4:227293/149‑1 (MQ=255) acgaACCGGGGCGCTGGGACCACTGGCCCAGCGGCTTTCTGTTCACCTGGCCGAACGAGGACAGCGCCGAGGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAACTATTGCCGCGAGCGCATCACCCTGGAAATc < 7:99458/149‑1 (MQ=255) aCCGGGGCGCTGGGACCACTGGCCCAGCGGCTTTCTGTTCACCTGGCCGAACGAGGACAGCGCCGAGGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAACTATTGCCGCGAGCGCATCACCCTGGAAATCGaaa < 6:302515/149‑1 (MQ=255) aCCGGGGCGCTGGGACCACTGGCCCAGCGGCTTTCTGTTCACCTGGCCGAACGAGGACAGCGCCGAGGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAACTATTGCCGCGAGCGCATCACCCTGGAAATCGaa > 1:81810/1‑148 (MQ=255) ccGGGGCGCTGGGACCACTGGCCCAGCGGCTTTCTGTTCACCTGGCCGAACTAGGACAGCGCCGAGGGCACGCTGGTGCTGGACGTGTTCTGACATCATCCTGC‑CGTTCAAGAACTATTGCCGCGAGCGCATTACCCTGGAAATCGaaa < 1:249033/149‑1 (MQ=255) ccGGGGCGCTGGGACCACTGGCCCAGCGGCTTTCTGTTCACCTGGCCGAACGAGGACAGCGCCGAGGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAACTATTGCCGCGAGCGCATGACCCTGGAAAGCGaaa > 8:281760/1‑148 (MQ=255) cGGGGCGCTGGGACCACTGGCCCAGCGGCTTTCTGTTCACCTGGCCGAACGAGGACAGCGCCGAGGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAACTATTGCCGCGAGCGCATCACCCTGGAAATCGaaaaa < 5:115380/149‑1 (MQ=255) ggggCGCTGGGACCACTGGCCCAGCGGCTTTCTGTTCACCTGGCCGAACGAGGACAGCGCCGAGGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAACTATTGCCGCGAg > 5:165866/1‑124 (MQ=255) ggggCGCTGGGACCACTGGCCCAGCGGCTTTCTGTTCACCTGGCCGAACGAGGACAGCGCCGAGGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAACTATTGCCGCGAg < 6:165866/124‑1 (MQ=255) ggggCGCTGGGACCACTGGCCCAGCGGCTTTCTGTTCACCTGGCCGAACGAGGACAGCGCCGAGGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAACTATTGCCGCGAGCGCATCACCCTGGAAATCGAAAAAg > 4:34529/1‑149 (MQ=255) ccAGCGGCTTTCTGTTCACCTGGCCGAACGAGGACAGCGCCGAGGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAACTATTGCCGCGAGCGCATCACCCTGGAAATCGAAAAAGGCTTCATCACCGGCATACAt > 7:90690/1‑149 (MQ=255) ccAGCGGCTTTCTGTTCACCTGGCCGAACGAGGACAGCGCCGAGGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAACTATTGCCGCGAGCGCATCACCCTGGAAATCGAAAAAGGCTTCATCACCGGCATACAt > 7:126081/1‑149 (MQ=255) cAGCGGCTTTCTGTTCACCTGGCCGAACGAGGACAGCGCCGAGGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAACTATTGCCGCGAGCGCATCACCCTGGAAATCGAAAAAGGCTTCATCACCGGCATACATg > 3:131089/1‑149 (MQ=255) gCGGCTTTCTGTTCACCTGGCCGAACGAGGACAGCGCCGAGGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAACTATTGCCGCGAGCGCATCACCCTGGAAATCGAAAAAGGCTTCATCACCGGCATACATggc < 5:97877/149‑1 (MQ=255) gTTCACCTGGCCGAACGAGGACAGCGCCGAGGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAAc > 6:157261/1‑79 (MQ=255) gTTCACCTGGCCGAACGAGGACAGCGCCGAGGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAAc < 5:157261/79‑1 (MQ=255) gTTCACCTGGCCGAACGAGGACAGCGCCGAGGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAACTATTGCCGCGAGCGCATCACCCTGGAAATCGAAAACGGCTTCATCACCGGCATACATGTCGGCTTCGCgg > 8:223868/1‑149 (MQ=255) cACCTGGCCGAACGAGGACAGCGCCGAGGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAACTATTGCCGCGAGCGCATCACCCTGGAAATCGAAAAAGGCTTCATCACCGGCATACATGGCGGCTTCGAGGcc > 6:174851/1‑148 (MQ=255) aCCTGGCCGAACGAGGACAGCGCCGAGGGCACGTTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAACTATTGCCGCGAGCGCATCACCCTGGAAATCGAAAAAGGCTTCATCACCGGCATACATGGCGGCTTCGAGGcc > 2:318082/1‑147 (MQ=255) aCCTGGCCGAACGAGGACAGCGCCGAGGGCACGTTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAACTATTGCCGCGAGCGCATCACCCTGGAAATCGAAAAAGGCTTCATCACCGGCATACATGGCGGCTTCGAGGcc > 4:51704/1‑147 (MQ=255) aCCTGGCCGAACGAGGACAGCGCCGAGGGCACGTTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAACTATTGCCGCGAGCGCATCACCCTGGAAATCGAAAAAGGCTTCATCACCGGCATACATGGCGGCTTCGAGGCCGa < 1:318082/149‑1 (MQ=255) aCCTGGCCGAACGAGGACAGCGCCGAGGGCACGTTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAACTATTGCCGCGAGCGCATCACCCTGGAAATCGAAAAAGGCTTCATCACCGGCATACATGGCGGCTTCGAGGCCGa < 3:51704/149‑1 (MQ=255) aCCTGGCCGAACGAGGACAGCGACGAGGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAACTATTGCCGCGAGCGCATCACCCTGGAAATCGAAAAAGGCTTCATCACCGGCATACATGGCGGCTTCGAGGcc > 7:199662/1‑147 (MQ=255) aCCTGGCCGAACGAGGACAACGCCGATGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAACTATTGCCGCGAGCGCATCACCCTGGAAATCGAAAAAGGCTTCATCACCGGCATACATGGCGGCTTCGAGGCCGa > 5:176617/1‑149 (MQ=255) gCCGAACGAGGACAGCGCCGAGGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAACTATTGCCGCGAGCGCATCACCCTGGAAATCGAAAAAGGCTTCATCACCGGCATACATGGCGGCTTCGAGGCCGAGTAcc > 5:138097/1‑149 (MQ=255) cGAACGAGGACAGCGCCGAGGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCTGCAGGTTCAAGAACTATTGCCGCGAGCGCATCACCCTGGAAATCGAAAAAGGCTTCATCACCGGCATACATGGCGGCTTCGAGGCCGAGTACCt > 1:245080/1‑149 (MQ=255) aCGAGGACAGCGCCGAGGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAACTATTGCCGCGAGCGCATCACCCTGGAAATCGAAAAAGGCTTCATCACCGGCATACATGGCGGCTTCGAGGCCGAGTACCTGCGt < 4:131089/149‑1 (MQ=255) aCGAGGACAGCGCCGAGGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAACTATTGCCGCGAGCGCATCACCCTGGAAATCGAAAAAGGCTTCATCACCGGCATACATGGCGGCTTCGAGGCCGAGTACCTGCGt < 2:81810/149‑1 (MQ=255) gAGGACAGCGCCGAGGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAACTATTGCCGCGAGCGCATCACCCTGGAAATCGAAAAAGGCTTCATCACCGGCATACATGGCGGCTTCGAGGCCGAGTACCTGCGTGa < 3:34529/149‑1 (MQ=255) aGGACAGCGCCGAGGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAACTATTGCCGCGAGCGCATCACCCTGGAAATCGAAAAAGGCTTCATCACCGGCATACATGGCGGCTTCGAGGCCGAGTACCTGCGTGAc < 8:293896/149‑1 (MQ=255) gACAGCGCCGAGGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAACTATTGCCGCGAGCGCATCACCCTGGAAATCGAAAAAGGCTTCATCACCGGCATACATGGCGGCTTCGAGGCCGAGTACCTGCGTGACTa < 8:195236/149‑1 (MQ=255) aaGCGCCGAGGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAACTATTGCCGCGCGCGCATCACCCTGGAAATCGAAAAAGGc < 4:92221/96‑1 (MQ=255) cgcCGAGGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAACTATTGCCGCGAGCGCATCACCCTGGAAATCGAAAAAGGCTTCATCACCGGCATACATGGCGGCTTCGAGGCCGAGTACCTGCGTGACTACATg > 1:218280/1‑148 (MQ=255) cgcCGAGGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAACTATTGCCGCGAGCGCATCACCCTGGAAATCGAAAAAGGCTTCATCACCGGCATACATGGCGGCTTCGAGGCCGAGTACCTGCGTGACTACATGa < 5:42161/149‑1 (MQ=255) cGAGGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAACTATTGCCGCGAGCGCATCACCCTGGAAATCGAAAAAGGCTTCATCACCGGCATACATGGCGGCTTCGAGGCCGAGTACCTGCGTGACTACATGaaa < 6:77792/148‑1 (MQ=255) cGAGGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAACTATTGCCGCGAGCGCATCACCCTGGAAATCGAAAAAGGCTTCATCACCGGCATACATGGCGGCTTCGAGGCCGAGTACATGCGTGACTACATGaaa > 5:77792/1‑148 (MQ=255) | AAGGCCGGTAGCGACTTCCACGCCCCGCTCGGCCAGTACCCGGCCGTGACTGAGTACGGCTATGCCGACGAACCGGGGCGCTGGGACCACTGGCCCAGCGGCTTTCTGTTCACCTGGCCGAACGAGGACAGCGCCGAGGGCACGCTGGTGCTGGACGTG‑GGTGACATCATCCTGC‑CGTTCAAGAACTATTGCCGCGAGCGCATCACCCTGGAAATCGAAAAAGGCTTCATCACCGGCATACATGGCGGCTTCGAGGCCGAGTACCTGCGTGACTACATGAAA > NC_002947/4448363‑4448644 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |