Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,471,659 | A→T | 7.1% | intergenic (‑470/‑424) | PP_3961 ← / → PP_3962 | transporter/hypothetical protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,471,659 | 0 | A | T | 7.1% | 161.5 / 3.3 | 56 | intergenic (‑470/‑424) | PP_3961/PP_3962 | transporter/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base A (28/24); new base T (2/2); total (30/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.39e-01 |
GACTTGCCGCATGCCGCGAAGGTTGAGGATTACGAATCGCTATTGCCGTGGAAGTGAAAGTCGGGGAAGCCACGGTAAACCAAGCCCTGACCTTGCGGCAGGAAGGGAACGTGGATCGGTTAAGAAACGCAAAAAGCCTTGAATAATCAGGGCTTTCCTCATGCCTCTGGCCCATTGGGCCGGCGCGCTCCGCTTACCATTTGACACCAAGATTCAATGACGTGAACCGTCGCATATGTCGCAGATCACGCGCATGGGCTGGCCCTGCGTTGGCGAACCCTGCGATGACA > NC_002947/4471514‑4471803 | gaCTTGCCGCATGCCGCGAAGGTTGAGGATTACGAATCGCTATTGCCGTGGAAGTGAAAGTCGGGGAAGCCACGGTAAACCAAGCCCTGACCTTGCGGCAGGAAGGGAACGTGGATCGGTTAAGAAACGCAAAAAGCCTTGAATAATCa < 7:241837/149‑1 (MQ=255) ttGCCGCATGCCGCGAAGGTTGAGGATTACGAATCGCTATTGCCGTGGAAGTGAAAGTCGGGGAAGCCACGGTAAACCAAGCCCTGACCTTGCGGCAGGAAGGGAACGTGGATCGGTTAAGAAACGCAAAAAGCCTTGAATAATCAggg < 7:259361/149‑1 (MQ=255) gCATGCCGCGAAGGTTGAGGATTACGAATCGCTATTGCCGTGGAAGTGAAAGTCGGGGAAGCCACGGTAAACCAAGCCCTGACCTTGCGGCAGGAAGGGAACGTGGATCGGTTAAGAAACGCAAAAAGCCTTGAATAATCAGGGCTTTc > 2:90883/1‑149 (MQ=255) gCATGCCGCGAAGGTTGAGGATTACGAATCGCTATTGCCGTGGAAGTGAAAGTCGGGGAAGCCACGGTAAACCAAGCCCTGACCTTGCGGCAGGAAGGGAACGTGGATCGGTTAAGAAACGCAAAAAGCCTTGAATAATCAGGGCTTTc < 2:300091/149‑1 (MQ=255) ggcgAAGGTTGAGGATTTCGAATCGCTATTGCCGTGGAAGTGAAAGTCGGGGAAGCCACGGTAAACCAAGCCCTGACCTTGCGGCAGTAATGGAACGTGGATCGGTTAAGAAACGCAAAAAGCCTTGAATAATCAGGGCTTTCCTCATg < 1:273151/148‑1 (MQ=255) gTTGAGGATTACGAATCGCTATTGCCGTGGAAGTGAAAGTCGGGGAAGCCACGGTAAACCAAGCCCTGACCTTGCGGCAGGAAGGGAACGTGGATCGGTTAAGAAACGCAAAAAGCCTTGAATAATCAGGGCTTTCCTCATGCCTCTgg > 1:154262/1‑149 (MQ=255) gTTGAGGATTACGAATCGCTATTGCCGTGGAAGTGAAAGTCGGGGAAGCCACGGTAAACCAAGCCCTGACCTTGCGGCAGGAAGGGAACGTGGATCGGTTAAGAAACGCAAAAAGCCTTGAATAATCAGGGCTTTCCTCATGCCTCTgg < 2:154262/149‑1 (MQ=255) ttGAGGATTACGAATCGCTATTGCCGTGGAAGTGAAAGTCGGGGAAGCCACGGTAAACCAAGCCCTGACCTTGCGGCAGGAAGGGAACGTGGATCGGTTAAGAAACGCAAAAAGCCTTGAATAATCAGGGCTTTCCTCATGCCTCTgg < 6:117206/148‑1 (MQ=255) gATTACGAATCGCTATTGCCGTGGAAGTGAAAGTCGGGGAAGCCACGGTAAACCAAGCCCTGACCTTGCGGCAGGAAGGGAACGTGGATCGGTTAAGAAACGCAAAAAGCCTTGAATAATCAGGGCTTTCCTCATGCCTCTGGCCCAtt < 3:177/149‑1 (MQ=255) gAATCGCTATTGCCGTGGAAGTGAAAGACGGGGAAGCCACGGTAAACCAAGCCCTGACCTTGCGGCAGGAAGGGAACGTGGATCGGTTAAGAAACGCAAAAAGCCTTGAATAATCAGGGCTTTCCTCATGCCTCTGGCCCATTGGGCCg > 8:257980/1‑149 (MQ=255) aTCGCTATTGCCGTGGAAGTGAAAGTCGGGGAAGCCACGGTAAACCAAGCCCTGACCTTGCGGCAGGAAGGGAACGTGGATCGGTTAAGAAACGCAAAAAGCCTTGAATAATCAGGGCTTTCCTCATGCCTCTGGCCCATTGGGCCGgc > 5:79864/1‑149 (MQ=255) tCGCTATTGCCGTGGAAGTGAAAGTCGGGGAAGCCACGGTAAACCAAGCCCTGACCTTGCGGCAGGAAGGGAACGTGGATCGGTTAAGAAACGCAAAAAGCCTTGAATAATCAGGGCTTTCCTCAt > 2:83559/1‑126 (MQ=255) tCGCTATTGCCGTGGAAGTGAAAGTCGGGGAAGCCACGGTAAACCAAGCCCTGACCTTGCGGCAGGAAGGGAACGTGGATCGGTTAAGAAACGCAAAAAGCCTTGAATAATCAGGGCTTTCCTCAt > 7:141086/1‑126 (MQ=255) tCGCTATTGCCGTGGAAGTGAAAGTCGGGGAAGCCACGGTAAACCAAGCCCTGACCTTGCGGCAGGAAGGGAACGTGGATCGGTTAAGAAACGCAAAAAGCCTTGAATAATCAGGGCTTTCCTCAt < 1:83559/126‑1 (MQ=255) tCGCTATTGCCGTGGAAGTGAAAGTCGGGGAAGCCACGGTAAACCAAGCCCTGACCTTGCGGCAGGAAGGGAACGTGGATCGGTTAAGAAACGCAAAAAGCCTTGAATAATCAGGGCTTTCCTCAt < 8:141086/126‑1 (MQ=255) cGTGGAAGTGAAAGTCGGGGAAGCCACGGTAAACCAAGCCCTGACCTTGCGGCAGGAAGGGAACGTGGATCGGTTAAGAAACGCAAAAAGCCTTGAATAATCAGGGCTTTCCTCATGCCTCTGGCCCATTGGGCCGGCGCGCTCCGCt > 3:171335/1‑148 (MQ=255) aaGTGAAAGTCGGGGAAGCCACGGTAAACCAAGCCCCGACCTTGCGGCAGGAAGGGAACGTGGATCGGTTAAGAAACGCAAAAAGCCTTGAATAATCAGGGCTTTCCTCATGCCTCTGGCCCATTGGGCCGGCGCGCTCCGCTTACCAt < 7:250622/149‑1 (MQ=255) aGTGAAAGTCGGGGAAGCCACGGTAAACCAAGCCCTGACCTTGCGGCAGGAAGGGAACGTGGATCGGTTAAGAAACGCAAAAAGCCTTGAATAATCAGGGCTTTCCTCATGCCTCTGGCCCATTGGGCCGGCGCGCTCCGCTTACCAtt > 3:250442/1‑149 (MQ=255) aGTCGGGGAAGCCACGGTAAACCAAGCCCTGACCTTGCGGCAGGAAGGGAACGTGGATCGGTTAAGAAACGCAAAAAGCCTTGAATAATCAGGGCTTTCCTCATGCCTCTGGCCCATTGGGCCGGCGCGCTCCGCTTa < 3:217290/138‑1 (MQ=255) aGTCGGGGAAGCCACGGTAAACCAAGCCCTGACCTTGCGGCAGGAAGGGAACGTGGATCGGTTAAGAAACGCAAAAAGCCTTGAATAATCAGGGCTTTCCTCATGCCTCTGGCCCATTGGGCCGGCGCGCTCCGCTTa > 4:217290/1‑138 (MQ=255) gTCGGGGAAGCCACGGTAAACCAAGCCCTGACCTTGCGGCAGGAAGGGAACGTGGATCGGTTAAGAAACGCAAAAAGCCTTGAATAATCAGGGCTTTCCTCATGCCTCTGGCCCATTGGGCCGGCGCGCTCCGCTTACCATTTGACAcc < 8:250898/149‑1 (MQ=255) gggAAGCCACGGTAAACCAAGCCCTGACCTTGCGGCAGGAAGGGAACGTGGATCGGTTAAGAAACGCAAAAAGCCTTGAATAATCAGGGCTTTCCTCATGCCTCTGGCCCATTGGGCCGGCGCGCTCCGCTTACCATTTGACAcc > 6:115286/1‑145 (MQ=255) gggAAGCCACGGTAAACCAAGCCCTGACCTTGCGGCAGGAAGGGAACGTGGATCGGTTAAGAAACGCAAAAAGCCTTGAATAATCAGGGCTTTCCTCATGCCTCTGGCCCATTGGGCCGGCGCGCTCCGCTTACCATTTGACAcc > 7:150076/1‑145 (MQ=255) gggAAGCCACGGTAAACCAAGCCCTGACCTTGCGGCAGGAAGGGAACGTGGATCGGTTAAGAAACGCAAAAAGCCTTGAATAATCAGGGCTTTCCTCATGCCTCTGGCCCATTGGGCCGGCGCGCTCCGCTTACCATTTGACACCAAGa < 6:79864/149‑1 (MQ=255) gCCACGGTAAACCAAGCCCTGACCTTGCGGCAGGAAGGGAACGTGGATCGGTTAAGAAACGCAAAAATCATTGAATAATCAGGGCTTTCCTCATGCCTCTGGCCCATTGGGCCGGCGCGCTCCGCTTACCATTTGACAGCAAGATTCaa < 3:181275/149‑1 (MQ=255) aCGGTAAACCAAGCCCTGACCTTGCGGCAGGAAGGGAACGTGGATCGGTTAAGAAACGCAAAAAGCCTTGAATAATCAGGGCTTTCCTCATGCCTCTGGCCCATTGGGCCGGCGCGCTCCGCTTACCATTTGACACCAAGATTCAATGa > 5:196785/1‑149 (MQ=255) aCGGTAAACCAAGCCCTGACCTTGCGGCAGGAAGGGAACGTGGATCGGTTAAGAAACGCAAAAAGCCTTGAATAATCAGGGCTTTCCTCATGCCTCTGGCCCATTGGGCCGGCGCGCTACGCTTACCATTTGACACCAAGATTCAATGa > 3:202984/1‑149 (MQ=255) aaaCCAAGCCCTGACCTTGCGGCAGGAAGGGAACGTGGATCGGTTAAGAAACGCAAAAAGCCTTGAATAATCAGGGCTTTCCTCATGCCTCTGGCCCATTGGGCCGGCGCGCTCCGCTTACCATTTGACACCAAGATTCAATGACGTg > 5:74795/1‑148 (MQ=255) aGCCCTGACCTTGCGGCAGGAAGGGAACGTGGATCGGTTAAGAAACGCAAAAAGCCTTGAATAATCAGGGCTTTCCTCATGCCTCTGGCCCATTGGGCCGGCGCGCTCCGCTTACCATTTGACACCAAGATTCAATGACGTGAACCGTc < 5:115286/149‑1 (MQ=255) cccTGACCTTGCGGCAGGAAGGGAACGTGGATCGGTTAAGAAACGCAAAAAGCCTTGAATAATCAGGGCTTTCCTCATGCCTCTGGCCCATTGGGCCGGCGCGCTCCGCTTAc > 8:40322/1‑113 (MQ=255) cccTGACCTTGCGGCAGGAAGGGAACGTGGATCGGTTAAGAAACGCAAAAAGCCTTGAATAATCAGGGCTTTCCTCATGCCTCTGGCCCATTGGGCCGGCGCGCTCCGCTTAc < 7:40322/113‑1 (MQ=255) cccTGACCTTGCGGCAGGAAGGGAACGTGGATCGGTTAAGAAACGCAAAAAGCCTTGAATAATCAGGGCTTTCCTCATGCCTCTGGCCCATTGGGCCGGCGCGCTCCGCTTACCATTTGACACCAAGATTCAATGACGTGAACCGTCg > 7:9172/1‑148 (MQ=255) ccTGACCTTGCGGCAGGAAGGGAACGTGGATCGGTTAAGAAACGCAAAAAGCCTTGAATAATCAGGGCTTTCCTCATGCCTCTGGCCCATTGGGCCGGCGCGCTCCGCTTACCATTTGACACCAAGATTCAATGACGTGAACCGTCGc > 8:65475/1‑148 (MQ=255) ggCAGGAAGGGAACGTGGATCGGTTAAGAAACGCAAAAAGCCTTGAATAATCAGGGCTTTCCTCATGCCTCTGGCCCATTGGGCCGGCGCGCTCCGCTTACCATTTGACACCAAGATTCAATGACGTGAACCGTCGCATATGTCg > 1:53008/1‑145 (MQ=255) aGGGAACGTGGATCGGTTAAGAAACGCAAAAAGCCTTGAATAATCAGGGCTTTCCTCATGCCTCTGGCCCATTGGGCCGGCGCGCTCCGCTTACCATTTGACACCAAGATTCAATGACGTGAACCGTCGCATATGTCGCAGATCAcgc < 4:202984/148‑1 (MQ=255) gATCGGTTAAGAAACGCAAAAAGCCTTGAATAATCAGGGCTTTCCTCATGCCTCTGGCCCATTGGGCCGGCGCGCTCCGCTTACCATTTGACACCAAGATTCAATGACGTGAACCGTCGCATATGTCGCAGATCACGCGCATGGGCTg < 7:257980/148‑1 (MQ=255) gTTAAGAAACGCAAAAAGCCTTGAATAATCAGGGCTTTCCTCATGCCTCTGGCCCATTGGGCCGGCGCGCTCCGCTTACCATTTGACACCAAGATTCAATGACGTGAACCGTCGCATATGTCGCAGATCACGCGCATGGGCTGGCCCTg > 4:296091/1‑149 (MQ=255) gTTAAGAAACGCAAAAAGCCTTGAATAATCAGGGCTTTCCTCATGCCTCTGGCCCATTGGGCCGGCGCGCTCCGCTTACCATTTGACACCAAGATTCAATGACGTGAACCGTCGCATATGTCGCAGATCACGCGCATGGGCTGGCCCTg > 3:180308/1‑149 (MQ=255) ttAAGAAACGCAAAAAGCCTTGAATAATCAGGGCTTTCCTCATGCCTCTGGCCCATTGGGCCGGCGCGCTCCGCTTACCATTTGACACCAAGATTCAATGACGTGAACCGTCGCATATGTCGCAGATCACGCGCATGGGCTGGCCCTGc > 6:125453/1‑149 (MQ=255) ttAAGAAACGCAAAAAGCCTTGAATAATCAGGGCTTTCCTCATGCCTCTGGCCCATTGGGCCGGCGCGCTACGCTTACCATTTGACACCAAGATTCAATGACGTGAACCGTCGCATAAGTCGCAGATCACGCGCATGGGCTTGACCTGc > 5:7169/1‑149 (MQ=255) aaGAAACGCAAAAAGCCTTGAATAATCAGGGCTTTCCTCATGCCTCTGGCCCATTGGGCCGGCGCGCTCCGCTTACCATTTGACACCAAGATTCAATGACGTGAACCGTCGCATATGTCGCAGATCACGCGCATGGGCTGGCCCTGCg < 7:65475/148‑1 (MQ=255) aGAAACGCAAAAAGCCTTGAATAATCAGGGCTTTCCTCATGCCTCTGGCCCATTGGTCCGGCGCGCTCCGCTTACCATTTGACACCAAGATTCAATGACGTGAACCGTCGCATATGTCGCAGATCACGCGCATGGGCTGGCCCTGCGtt < 6:196785/149‑1 (MQ=255) aaaCGCAAAAAGCCTTGAATAATCAGGGCTTTCCTCATGCCTCTGGCCCATTGGGCCGGCGCGCTCCGCTTACCATTTGACACCAAGATTCAATGACGTGAACCGTCGCATATGTCGCAGATCACGCGCATGGGCTGGCCCTGCGTTgg > 5:46429/1‑149 (MQ=255) aaaCGCAAAAAGCCTTGAATAATCAGGGCTTTCCTCATGCCTCTGGCCCATTGGGCCGGCGCGCTCCGCTTACCATTTGACACCAAGATTCAATGACGTGAACCGTCGCATATGTCGCAGATCACGCGCATGGGCTGGCCCTGCGTTgg < 4:171335/149‑1 (MQ=255) aaaCGCAAAAAGCCTTGAATAATCAGGGCTTTCCTCATGCCTCTGGCCCATTGGGCCGGCGCGCTCCGCTTACCATTTGACACCAAGATTCAATGACGTGAACCGTCGCATATGTCGCAGATCACGCGCATGGGCTGGCCCTGCGTTgg < 3:244492/149‑1 (MQ=255) aaaCGCAAAAAGCCTTGAATAATCAGGGCTTTCCTCATGCCTCTGGCCCATTGGGCCGGCGCGCTCCGCTTACCATTTGACACCAAGATTCAATGACGTGAACCGTCGCATATGTCGCAGATCACGCGCATGGGCTGGCCCTGCGTTgg > 1:32604/1‑149 (MQ=255) cAAAAAGCCTTGAATAATCAGGGCTTTCCTCATGCCTCTGGCCCATTGGGCCGGCGCGCTCCGCTTACCATTTGACACCAAGATTCAATGACGTGAACCGTCGCATATGTCGCAGATCACGCGCATGGGCTGGCCCTGCGTTGGCGAAc < 8:9172/149‑1 (MQ=255) aggaaaGCCCTGATTATTCAAGGCTTTCCTCATGCCTCTGGCCCATTGGGCCGGCGCGCTCCGCTTACCATTTGACACCAAGATTCAATGACGTGAACCGTCGCATATGTCGCAGATCACGCGCATGGGCTGGcc > 7:257713/4‑135 (MQ=255) aggaaaGCCCTGATTATTCAAGGCTTTCCTCATGCCTCTGGCCCATTGGGCCGGCGCGCTCCGCTTACCATTTGACACCAAGATTCAATGACGTGAACCGTCGCATATGTCGCAGATCACGCGCATGGGCTGGcc < 8:257713/132‑1 (MQ=255) aaaaaGCCTTGAATAATCAGGGCTTTCCTCATGCCTCTGGCCCATTGGGCCGGCGCGCTCCGCTTACCATTTGACACCAAGATTCAATGACGTGAACCGTCGCATATGTCGCAGATCACGCGCATGGGCTGGCCCTGCGTTGGCg > 4:187498/1‑145 (MQ=255) aaaaaGCCTTGAATAATCAGGGCTTTCCTCATGCCTCTGGCCCATTGGGCCGGCGCGCTCCGCTTACCATTTGACACCAAGATTCAATGACGTGAACCGTCGCATATGTCGCAGATCACGCGCATGGGCTGGCCCTGCGTTGGCg < 3:187498/145‑1 (MQ=255) aGCCCTGATTATTCAGGGCTTTCCTCATGCCTCTGGCCCATTGGGCCGGCGCGCTCCGCTTACCATTTGACACCAAGATTCAATGACGTGAACCGTCGCat < 7:276834/101‑1 (MQ=255) aGCCCTGATTATTCAGGGCTTTCCTCATGCCTCTGGCCCATTGGGCCGGCGCGCTCCGCTTACCATTTGACACCAAGATTCAATGACGTGAACCGTCGCat > 8:276834/1‑101 (MQ=255) ttGAATAATCAGGGCTTTCCTCATGCCTCTGGCCCATTGGGCCGGCGCGCTCCGCTTACCATTTGACACCAAGATTCAATGACGTGAACCGTCGCATATGTCGCAGATCACGCGCATGGGCTGGCCCTGCGTTGGCGAACCCTGCGAt > 5:292653/1‑148 (MQ=255) tGAATAATCAGGGCTTTCCTCATGCCTCTGGCCCATTGGGCCGGCGCGCTCCGCTTACCATTTGACACCAAGATTCAATGACGTGAACCGTCGCATATGTCGCAGATCAAGCGCATGGGCTGGCCCTGCGTTGGCGAACCCTGCGATGa > 5:5678/1‑149 (MQ=255) gAATAATCAGGGCTTTCCTCATGCCTCTGGCCCATTGGGCCGGCGCGCTCCGCTTACCATTTGACACCAAGATTCAATGACGTGAACCGTCGCATATGTCGCAGATCACGCGCATGGGCTGGCCCTGCGTTGGCGAACCCTGCGATGa > 4:96470/1‑148 (MQ=255) aataatCAGGGCTTTCCTCATGCCTCTGGCCCATTGGGCCGGCGCGCTCCGCTTACCATTTGACACCAAGATTCAATGACGTGAACCGTCGCATATGTCGCAGATCACGCGCATGGGCTGGCCCTGCGTTGGCGAACCCTGCGATGACa > 2:26742/1‑149 (MQ=255) | GACTTGCCGCATGCCGCGAAGGTTGAGGATTACGAATCGCTATTGCCGTGGAAGTGAAAGTCGGGGAAGCCACGGTAAACCAAGCCCTGACCTTGCGGCAGGAAGGGAACGTGGATCGGTTAAGAAACGCAAAAAGCCTTGAATAATCAGGGCTTTCCTCATGCCTCTGGCCCATTGGGCCGGCGCGCTCCGCTTACCATTTGACACCAAGATTCAATGACGTGAACCGTCGCATATGTCGCAGATCACGCGCATGGGCTGGCCCTGCGTTGGCGAACCCTGCGATGACA > NC_002947/4471514‑4471803 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |