| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 278,744 | +A | intergenic (‑239/+75) | PP_0224 ← / ← sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 278,742 | 1 | . | A | 93.9% | 101.0 / ‑0.1 | 33 | intergenic (‑237/+77) | PP_0224/sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| Reads supporting (aligned to +/- strand): ref base . (1/1); new base A (14/17); total (15/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑T‑AA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTC > NC_002947/278605‑278875 | aGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGc < 7:103294/146‑1 (MQ=255)aGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTc > 5:865/1‑148 (MQ=255) cgACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTAcacaca < 7:73928/148‑1 (MQ=255) gACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACAt < 6:69075/148‑1 (MQ=255) cAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGc < 4:18740/148‑1 (MQ=255) gtgtGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCaa < 2:133338/148‑1 (MQ=255) tggtccggtggtccggTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCtg < 3:189626/148‑1 (MQ=255) tccggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCtgt < 1:148153/146‑1 (MQ=255) gtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTAAAGATCTGTGCACTGTa > 8:132824/1‑147 (MQ=255) gtccggtATATATACACTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCAGGGCTCTTCGCGGG‑TAAA‑CCCACACCTACACACAAGCCTCAATATCTGTGCACTCTa > 8:130326/1‑147 (MQ=255) atatataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCggg < 6:94548/148‑1 (MQ=255) atatataCACTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCggg < 8:86081/148‑1 (MQ=255) tatataCCCTAATGATTTATAAAATTTTTATGAACTAACATTTTGTAATATTTATAGAATGGGTATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGATCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCggg < 1:150488/147‑1 (MQ=255) ccTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTACTACACAAATGCCTCAAGATCTGTGAACTGTAGGAGCGGGGTTACCcg > 1:136653/1‑148 (MQ=255) cTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCcg > 3:132564/1‑147 (MQ=255) tAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCAGCGACTACACACATGCCTCAAGATCTGTGCACGGTAGGAGCGGGGTTACCcgc > 5:143754/1‑147 (MQ=255) tGATTTATAAAATTTTTATGAACTAACTTTTTGTAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGaaa < 6:178237/148‑1 (MQ=255) tGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACCCCTGCCTCAAGATCTGTGCCCTGTAGGAGCGGGTTTACCCGCGaaa > 4:180321/1‑148 (MQ=255) tGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGaaa > 4:177528/1‑148 (MQ=255) tttATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAggg > 7:21601/1‑148 (MQ=255) aaaTTTTTATGAACTAACCTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑ACCCCACCAACACACATGCCTCAAGATATGTGCACTGTAGGAGCGGGTTTAACCCCGAAAGGGCCGGa > 4:97561/1‑147 (MQ=255) actaactTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTGCTACACACATGCCTCAAGCTCTGTGCACTGTATGAGCGGGGTTACCCGCGACAGGGCCGGAACAGGTTTACTc > 7:26315/1‑147 (MQ=255) actTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTGAAGATCTGTGCAATGTTGGCGCGGGTTTACCCGCGAAAGGGGCGGAACAGGTTTACGcggcgg > 3:14555/1‑148 (MQ=255) aaTATTTATATAAGGGGCATTTGTTACAGAGGTGCCGGGCGCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTc < 7:130326/147‑1 (MQ=39) aaTATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTAAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTc < 7:132824/147‑1 (MQ=255) aGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTTGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAAc < 8:21601/147‑1 (MQ=255) aGGGGTATTTGTTACAGCGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGGGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTgc < 6:67968/148‑1 (MQ=255) aGGGGCATTTGTTACAGCGGGGCCGGGCGCTGCGCGGG‑A‑AACCCCGCTCCTACACACATGCCTCACGAGCTGTGCACTGTAGGAGCGGGTTAACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTgc < 1:9167/148‑1 (MQ=255) gggggATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTgc > 5:97468/1‑147 (MQ=255) gggggATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTgc > 5:94560/1‑147 (MQ=255) gggATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTT‑AA‑CCCGCTCCGACCCACCTGCCGCAAGGTCTGTGGACGGGTGGGGCGGGTTTTCCCGCGGAAGGGGCGGAACCGGTTTACGCGGGGGCCGCAGTCCCGAGGCACGTgcg > 8:25722/1‑146 (MQ=255) gATTTGTTACAGAGGGGCCGGGCTCTTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGTTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAg < 2:12971/148‑1 (MQ=255) ggatctTCGCGGG‑TAAA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTcttc < 2:136653/145‑1 (MQ=255) | AGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑T‑AA‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTC > NC_002947/278605‑278875 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |