| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 5,681,415 | +CGGG | intergenic (‑133/+71) | PP_4986 ← / ← PP_4987 | hemolysin III family channel protein/putative Chemotaxis protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,681,415 | 1 | . | C | 100.0% | 23.2 / NA | 9 | intergenic (‑133/+71) | PP_4986/PP_4987 | hemolysin III family channel protein/putative Chemotaxis protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (5/4); total (5/4) | |||||||||||
| * | NC_002947 | 5,681,415 | 2 | . | G | 100.0% | 22.4 / NA | 9 | intergenic (‑133/+71) | PP_4986/PP_4987 | hemolysin III family channel protein/putative Chemotaxis protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (5/4); total (5/4) | |||||||||||
| * | NC_002947 | 5,681,415 | 3 | . | G | 100.0% | 22.4 / NA | 9 | intergenic (‑133/+71) | PP_4986/PP_4987 | hemolysin III family channel protein/putative Chemotaxis protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (5/4); total (5/4) | |||||||||||
| * | NC_002947 | 5,681,415 | 4 | . | G | 100.0% | 22.6 / NA | 9 | intergenic (‑133/+71) | PP_4986/PP_4987 | hemolysin III family channel protein/putative Chemotaxis protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (5/4); total (5/4) | |||||||||||
CCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGC‑‑‑‑GCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCTTTCCAATG > NC_002947/5681272‑5681535 |||| ccGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACcgccgg < 6:167716/147‑4 (MQ=255) aaCACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTGCGCAGcc < 4:48291/148‑1 (MQ=38) caGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTGCGCAGCCCTAt < 7:109221/148‑1 (MQ=37) cTGGGTTCCTGTTGTGATGCTGATGGCTTCATTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTc < 8:54272/148‑1 (MQ=25) ttCGTTATTTGTGGGAGCGGCCTTTTTTAGCGAAAGGGGCGCGAAGCGG‑CCCAGGCTTTAATTGCCACTGCATGAAACGCCGGGGCTGCTGCGCCGCCCGATAGCGCCACCACGCCCCGACCCCTCCAGACCACCAGGCCCTGCGcc > 4:128555/1‑147 (MQ=16) gcgAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTTCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCAGCGCCTCACATCCTAAACAAGGTAAGGtt > 8:81070/1‑143 (MQ=25) gCTTTCATTGCCACTGCATGAACCGCCGGGGCTGCTGCGCAGCCCAATCGCGCCACAAGGCCCCTCCCACTCCAGACCACCAGGCCCTGCGCCACAACTACTAACCAAGGTAAGGTTGGACAACCGCGTCACCCCCCAGCCTTTcc > 8:55996/1‑146 (MQ=255) cTTTCATGGCCACTGCAGTAACCGCCGGGGCGGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCTTTCCAAt < 6:35952/148‑1 (MQ=38) tttCATTGCCACTGCATGAACCGCCGGGGCTTCTGAGCAGACATATAGCGACACAAGGCCGCTACCACTACAGACCACCAGGCCATGCGCCTACCATACTAAACAATGTAAGGTTTAAGATACGCGTCACGCACCAGCCTTTACaa > 2:145998/1‑146 (MQ=255) tttCATTGCCACTGCATGAACCGCCGGGGCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCCCATCAGAACCAACGTCAGGTTGCAGATCCGCGTCACGCACCAGCCTTTCCAATg > 8:29825/1‑148 (MQ=37) |||| CCGTAATACATGCAAACACAGACCTCCTGAGGTGGGCTGGGTTCCTGTTGTGATGCTGATGGCTTCGTTCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCAGGCTTTCATTGCCACTGCATGAACCGC‑‑‑‑GCTGCTGCGCAGCCCTATCGCGACACAAGGCCGCTCCCACTCCAGACCACCAGGCCCTGCGCCTCACATCCTAACCAAGGTCAGGTTGCAGATCCGCGTCACGCACCAGCCTTTCCAATG > NC_002947/5681272‑5681535 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |