| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 1,126,647 | +C | intergenic (‑101/+48) | tdcG‑II ← / ← gcvP‑I | L‑serine dehydratase/glycine dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,126,645 | 1 | . | C | 85.7% | 58.5 / 5.1 | 21 | intergenic (‑99/+50) | tdcG‑II/gcvP‑I | L‑serine dehydratase/glycine dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base . (3/0); new base C (7/11); total (10/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.02e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.84e-01 | |||||||||||
CGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGC‑GGG‑TTTACCCGCGAATGCGGAGGTATAGCCACCATCG‑CATTCGC‑GGGTAAA‑CCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACCGGCGG > NC_002947/1126513‑1126781 | ctatCTTTAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTTGACATTGAGCCCTGTAGGCGC‑GGG‑TTTACCCGCGAATGCGTAGGTATAGCCACCATCG‑CATTCGC‑GGGTAAACCCGCTCCTAcaca < 6:68043/145‑1 (MQ=37)cgatCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGC‑GGGTTTTACCCCCCAA‑GCGGCGGGATAGCCACCAACGCCATACCC‑GGGAAAA‑CCCCACCAAcacac > 4:183354/1‑147 (MQ=255) aCAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGC‑GGG‑TTTACCCGCGAATGCGGAGGTATAGCCACCATCG‑CATTCTC‑GGGTAAACCCGCTCCTACACAGAGCCCGCCa < 4:175868/148‑1 (MQ=255) aGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGC‑GGG‑TTTAACCCCGAAATCGGGGGGATAGCCCCCAACG‑CCTTAGCGGGGAAAA‑CCCCACCAACACAGAGCcccccccc > 2:114057/1‑148 (MQ=255) gTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGG‑TTTACCC‑CCCATTCGGTGGTATATCAACCCACC‑CAATCGCGGGGAAAA‑CCCCCCCAACACACAGCAcccccccc > 7:103891/1‑147 (MQ=255) cATGTGGCCCTCCGGCCAGGTTGTTGGGGGGACATTGAGCCCGGTCGGCGC‑GGG‑TTTACCCGCGAAGGCGGAGGTATAGCCACCATCG‑CATTCGC‑GGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAgg < 7:103575/148‑1 (MQ=38) aTGTGGACCTCCTGCCAGGTTGTGGGGTGGACATGGACCCCTGTAGGCGC‑GGG‑TTTACCCGCGAATGCGGAGGTATAGCCACCATCG‑CATTCGC‑GGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAggg < 7:80743/148‑1 (MQ=38) ggTTGTTGGGTGGACATTGAGCCCTGTCGGCGC‑GGG‑TTTACCCGAGAATGCGGAGGTATCGCCACCATCG‑CATTCGC‑GGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGAt < 6:129823/148‑1 (MQ=38) gggTGGACATTGAGCCGTGTAGGGGC‑GGG‑TTTACCGGCGAATGGGGAGGTATAGCCACCATCG‑CATTCGC‑GGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGACGCCTGATAGccct < 8:103891/147‑1 (MQ=37) gCCCTGTAGGCGC‑GGG‑TTTACCCGCGAATGCGGAGGTATAGCCACCATCG‑CATTCGC‑GGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAg < 3:183354/148‑1 (MQ=255) gc‑gGG‑TTTACCCGCGAATGCGGAGGTATAGCCACCATCG‑CATTCGC‑GGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAg > 8:41511/1‑148 (MQ=255) cagcgAATGCGGAGGTATACCCACCATCG‑CATTCGC‑GGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCACCTGGCGGGGAGGGCTATCAGGCGTCCAGATAGCACTCGATCGACGGGCAGCCGCCCACCAGCATGCGGTct > 6:151686/3‑147 (MQ=255) gcgAATGCGGAGGTATAGCCACCATCG‑CATTCGC‑GGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGcc > 6:5505/1‑148 (MQ=255) gCGGAGGTATAGCCACCATCG‑CATTCGC‑GGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAacac > 4:7428/1‑148 (MQ=255) gAGGTATAGCCACCATCG‑CATTCGC‑GGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGtt < 3:7428/148‑1 (MQ=255) aGGTATAGCCACCATCG‑CATTCGC‑GGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTg < 1:114057/148‑1 (MQ=255) gTATAGCCACCATCG‑CATTCGC‑GGGTAAACCCGCTCCTACACAGAGCCCGCCCCCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGt > 5:49444/1‑147 (MQ=255) cATTCGC‑GGTTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACcg < 6:140540/147‑1 (MQ=255) aTTCGC‑GGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACcggc < 4:9145/148‑1 (MQ=255) aTTCGC‑GGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACcggc > 1:6346/1‑148 (MQ=255) gc‑gGGTAAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACcggcgg > 4:188524/1‑146 (MQ=255) | CGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGC‑GGG‑TTTACCCGCGAATGCGGAGGTATAGCCACCATCG‑CATTCGC‑GGGTAAA‑CCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACACCAGGTTGCGGTCGCCGAACACGTTGTCGACCCGGCCGACCGGCGG > NC_002947/1126513‑1126781 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |