| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 278,744 | +A | intergenic (‑239/+75) | PP_0224 ← / ← sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 278,742 | 1 | . | A | 91.7% | 141.8 / 7.6 | 48 | intergenic (‑237/+77) | PP_0224/sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| Reads supporting (aligned to +/- strand): ref base . (1/3); new base A (24/20); total (25/23) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.38e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATGTCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGT‑AA‑CCCGCTCCTACACACATGCCTCAA‑GATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCGGCGCT > NC_002947/278595‑278885 | aTGTCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGt > 1:159133/1‑148 (MQ=255) gCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGT‑AA‑accc > 4:308699/1‑148 (MQ=255) gCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGT‑AA‑acc < 2:363477/148‑1 (MQ=255) aGCTGATCGCGACAGACGTGTGCTGGTCCGCGGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCGCTcc > 8:134918/1‑149 (MQ=255) tGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTa > 1:345948/1‑148 (MQ=255) gcgACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTacacac < 2:345948/148‑1 (MQ=255) cgACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCAGCTGCTacaagaat > 3:263055/1‑144 (MQ=255) gACAGACGTCTGCTGTTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGTGATTTGTTACAGATCTGCCGGGCTCTTCGCGGGTAAA‑CCCTCTCCTACACACATg < 2:254063/149‑1 (MQ=255) cGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCaa < 5:212880/149‑1 (MQ=255) cTGGGCCGGAGGTCCGGTATATATACCCTAATTATTTATAAAATTTTTATGAACTAACTATATGGAATATTAATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAA‑GATCtg < 6:264442/149‑1 (MQ=255) tggtccggtggtccggTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCCA‑CATAtgt > 6:12039/1‑149 (MQ=255) cggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAA‑GATCTGTGCACTGTa < 7:134918/148‑1 (MQ=255) cggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAA‑GATCTGTGCACTGTAGGAGc < 3:63057/149‑1 (MQ=255) tatatataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCa > 7:131917/1‑125 (MQ=255) tatatataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCa < 8:131917/125‑1 (MQ=255) ataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAA‑GATCTGTGCAATGTAGGAGCGGGTTTAc > 6:294000/1‑149 (MQ=255) cccTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑ACCGCTGCTAAACACATGGCTAAA‑TATATTTTCACTTTAGGAGAGGGTTTTCCcg > 5:29495/1‑149 (MQ=255) ccTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAA‑GATCt < 6:240639/122‑1 (MQ=255) ccTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAA‑GATCt > 5:240639/1‑122 (MQ=255) ccTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAA‑GATCTGTGCACTGTAGGAGCGGGTTTACCcgc > 6:111550/1‑149 (MQ=255) ttaTTTATAAATTTTTTATGAACAAACTTTTTGTAATATTTATAGACGGGGTATTTGTTACAGCGGGGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAA‑TATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAg < 2:159133/147‑1 (MQ=38) tGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAA‑GATCTGTGCACTGTAGGAGCggg < 8:305326/135‑1 (MQ=255) tGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAA‑GATCTGTGCACTGTAGGAGCggg > 7:305326/1‑135 (MQ=255) gATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAA‑GATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAgg > 1:92896/1‑149 (MQ=255) aTTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAA‑GATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAggg > 5:259861/1‑149 (MQ=255) aaaTTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAA‑TATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAAc < 2:92896/149‑1 (MQ=255) aaTTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTACCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAA‑GATCTGTGCACTGTAGGAGCGGGtt < 4:72289/127‑1 (MQ=255) aaTTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTACCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAA‑GATCTGTGCACTGTAGGAGCGGGtt > 3:72289/1‑127 (MQ=255) aTTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAA‑GATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAg < 3:308699/149‑1 (MQ=255) tttttATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAA‑GATCTGTGCACTGTAGGAGCggg < 4:67571/123‑1 (MQ=255) tttttATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAA‑GATCTGTGCACTGTAGGAGCggg > 3:67571/1‑123 (MQ=255) ttatctTTTTTCAATATTTATAGAGCGGGCAGTTGTTACTGAGGTGCCTGGCTCTTCCCGGGTAAA‑CCCGCTCCTACACACA‑GCCCCAATCATATGTGCAGTGAAGGAGCGGGTTAACCCGCGAAAGGGCCGGAACAGGTTTACTCGGa < 4:263055/145‑1 (MQ=255) taactTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑ACCGCTACTACACACATGCCTCAA‑GATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAg > 5:328678/1‑149 (MQ=255) ctTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAA‑GATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGcc < 5:111550/149‑1 (MQ=255) gAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAA‑GATCTGTGGACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTcc > 3:238800/1‑149 (MQ=255) taGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCACAA‑GATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACt > 1:341646/1‑149 (MQ=255) gTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAA‑GATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCg > 6:284493/1‑128 (MQ=255) ttACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAA‑GATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGcc > 8:277019/1‑149 (MQ=255) gCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAA‑GATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAAc > 7:243640/1‑135 (MQ=255) gCCGGGCTCTTCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAA‑GATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAAc < 8:243640/135‑1 (MQ=255) gCCGGGCTCTTCGCGGGTAAA‑CCCGCTCATACACAAATCCCTCAA‑CATGTGTGCACTGTCGGAGCGGTTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGctc < 5:12039/149‑1 (MQ=255) gggCGCTCCGCGGCT‑AACCCCGCTCCTCCCCACATGCCTCAA‑CATCTGTGCACTGTAGCCGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTcttc < 6:259861/149‑1 (MQ=38) ttCGCGGTTAAA‑CCCGCTCCTACCCACATGCCTCAA‑TATCTGTCCACGGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACg < 3:27969/137‑1 (MQ=38) ttCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAA‑GATCTGTGCACTGTAGGTGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTcttccttc < 8:60044/147‑1 (MQ=255) ttCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAA‑GATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTcttccttc > 7:60044/1‑147 (MQ=255) ttCGCGGGTAAA‑CCCCCACCAACACACAAGCCTCAA‑AATCTGTGCACTGTAGGACCGGGGTTACCCGCGAAAGGGCCCGAACACGTTTACTCGGAGGCCGCAGTCCCGACGAACATGCGCAAGAACTGCCGCGTaac > 4:27969/1‑135 (MQ=255) tCGCGGGTAAA‑CCCGCTCCTACACACATGCCTCAA‑GATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCGgc > 5:31149/1‑149 (MQ=255) cgcgGGT‑AACCCCGCCCATACCCACTTGCCTCAC‑TAGCTGTGCACTGTAGCCGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCGgc < 6:29495/148‑1 (MQ=37) cgGGTAAA‑CCCGCTCCTACACACATGCCTCAA‑GATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCAGCGTACGCTCTTCCTTCGGCGCt > 6:314062/1‑149 (MQ=255) | ATGTCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGT‑AA‑CCCGCTCCTACACACATGCCTCAA‑GATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCGGCGCT > NC_002947/278595‑278885 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |