New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4808174 =	2 (0.030)	30 (0.630)	22/212	1.7	54.3%	intergenic (‑283/‑272)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	= 5988935	49 (1.030)					intergenic (+229/‑317)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA

GTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACG‑CCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATC  >  NC_002947/4808028‑4808314                                                                                                                                                   |                                                                                                                                              gtATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGAGTTTCAGCGCCTGGGAGTTGTTCGCCGGGAGAGTTTCAGCGGCTGGGATATCGAGCGccgccc                                                                                                                                             >  5:354195/1‑149 (MQ=255) ctacgtttgtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaccc                                                                                                                                             <  5:250559‑M1/3‑1 (MQ=255)    cgtttgtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCcgc                                                                                                                                           <  6:82682‑M1/5‑1 (MQ=255)     gtttgtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCcgcg                                                                                                                                          <  6:316531‑M1/6‑1 (MQ=255)         gtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAgcg                                                                                                                                     <  3:312098‑M1/11‑1 (MQ=255)                ccgAAGTCGCGCGTTGGCGGTGAGGTGTTTGGCGGGCGGGGGTCAGCGCCTGGTCGGTGTTCGCCGGGGGACTTTCAGCGCCGGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCttcgcg                                                                                                                              <  1:239483/147‑1 (MQ=21)                    gttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCgcgggcg                                                                                                                          <  3:350869‑M1/22‑1 (MQ=255)                        ttcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggcgcgggtttaCCCGCGAAGCGCCGCGCGggcggcga                                                                                                                      <  7:321941‑M1/26‑2 (MQ=255)                                 gacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTca                                                                                                             <  4:21292‑M1/35‑1 (MQ=255)                                 gacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTca                                                                                                             <  3:248342‑M1/35‑1 (MQ=255)                                             gaccgccttggggcatgtctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGaa                                                                                                  <  6:43960‑M1/46‑1 (MQ=255)                                                        ggcatgtctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCa                                                                                      >  3:52629‑M1/92‑149 (MQ=255)                                                            gcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaactaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGgcgc                                                                                                                      >  1:263091‑M1/88‑113 (MQ=255)                                                            gcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGgcgc                                                                                                                      <  2:263091‑M1/26‑1 (MQ=255)                                                               ctccatatagcgtcgtacaaacaaggcggtcgcgcgcgactgttgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCCCGCGGGCGGCGATCCATCTCACAGGCGCTGAAAATCGTCCGGCAAACAcc                                                                                <  4:97919‑M1/64‑1 (MQ=255)                                                                 cgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTc                                                                              <  4:20329‑M1/66‑1 (MQ=255)                                                                         cgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCa                                                                             <  6:220143‑M1/67‑1 (MQ=255)                                                                         cgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCa                                                                             >  5:220143‑M1/75‑141 (MQ=255)                                                                              tacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTc                                                                       >  1:38746‑M1/70‑142 (MQ=255)                                                                              tacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTc                                                                       <  2:38746‑M1/73‑1 (MQ=255)                                                                                caaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACG‑CCGt                                                             >  3:20329‑M1/68‑149 (MQ=255)                                                                                 cccaaggcggtcgcgcgcaaatcccgcaggaataattggcccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACG‑CCGTc                                                            >  6:360380‑M1/67‑149 (MQ=255)                                                                                 aaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACG‑CCGTc                                                            <  6:323562‑M1/83‑1 (MQ=255)                                                                                    caaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACG‑CCGTCCAc                                                         >  5:43960‑M1/64‑149 (MQ=255)                                                                                              gcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACG‑CCGTCCACTCAAAATTcc                                               >  5:323562‑M1/54‑149 (MQ=255)                                                                                                gcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACG‑CCGTCCACTCAAAATTCCaa                                             <  4:297624‑M1/98‑1 (MQ=255)                                                                                                 cgcgactggtgcaggagggactggccgaaacaaacgtaggagcgtgtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACG‑CCGTCCACTCAAAATTCCAAc                                            >  5:367218‑M1/51‑149 (MQ=255)                                                                                                         gtgcaggagggactggccgaaacaaacgtatgagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACG‑CCGTCCACTCAAAATTcc                                               >  6:334032‑M1/43‑138 (MQ=255)                                                                                                         gtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACG‑CCGTCCACTCAAAATTcc                                               <  5:334032‑M1/96‑1 (MQ=255)                                                                                                            caggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACG‑CCGTCCACTCAAAATTCCAACGCCGCACCCt                                  <  2:258294‑M1/109‑1 (MQ=255)                                                                                                                        gccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGACCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAAc                      >  1:258294‑M1/28‑149 (MQ=255)                                                                                                                        gccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACG‑CCGTCCACTCAAAATTCCAAc                                            >  4:359673‑M1/28‑126 (MQ=255)                                                                                                                        gccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACG‑CCGTCCACTCAAAATTCCAAc                                            <  3:359673‑M1/99‑1 (MQ=255)                                                                                                                        gccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACG‑CCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAAcg                     <  7:165237‑M1/122‑1 (MQ=255)                                                                                                                                aaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACG‑CCGTCCACTCTAAATTCAAACGCCGCCCCCTCAAAATTccaacgccgcaacc             <  8:318892‑M1/130‑5 (MQ=255)                                                                                                                                aaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACG‑CCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTcc             <  1:186209‑M1/130‑1 (MQ=255)                                                                                                                                    gtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACG‑CCGTCCACTCAAAATTCCAACGCCGccc                                     >  5:71611‑M1/16‑121 (MQ=255)                                                                                                                                    gtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACG‑CCGTCCACTCAAAATTCCAACGCCGccc                                     <  6:71611‑M1/106‑1 (MQ=255)                                                                                                                                        gagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACG‑CCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTc              >  2:4856‑M1/12‑140 (MQ=255)                                                                                                                                        gagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACG‑CCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTc              <  1:4856‑M1/129‑1 (MQ=255)                                                                                                                                        gagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACG‑CCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGaa      >  3:297624‑M1/12‑148 (MQ=255)                                                                                                                                           cgggtttaCCGGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCTCAGGCGCTGAAAATCCTCCTGCAAACACCTCAAAATTCCAACG‑CCGTCCACTCAAAATTCCAACGCCTCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATc  >  3:97919‑M1/9‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                              GTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACG‑CCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATC  >  NC_002947/4808028‑4808314

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.