New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	82067 =	55 (1.090)	6 (0.130)	6/242	NT	11.6%	intergenic (+44/+84)	PP_0071/qor‑I	hypothetical protein/quinone oxidoreductase
	?	NC_002947	82120 =	40 (0.850)					intergenic (+97/+31)	PP_0071/qor‑I	hypothetical protein/quinone oxidoreductase

AGGCGGCCAAGGCGCAGGCGGAGTTGTCGGCGCGCAGGACTGTGGGGTCGACCGTACTGATTCCTTGAGCCACACACATTCCCTGTAGGAGCGGGTTTACCCGCGAAGAAGCCACCGCGATGGATGGCACCGGCTTTGCCGGTGTTCGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/82218‑82067 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGACCCCACAGTCCTGCGCGCCGACAACTCCGCCTGCGCCTTGGCCGCCTCACTCAGCGGATACCGCTGCTGGATATCCACAGCCAGCTTGCCACTGCC  >  NC_002947/82120‑82267                                                                                                                                                                                                                                                                                                              AGGCGGCCAAGGCGCAGGCGGAGTTGTCGGCGCGCAGGACTGTGGGGTCGACCGTACTGATTCCTTGAGCCACACACATTCCCTGTAGGAGCGGGTTTACCCGCGAAGAAGCCACCGCGATGGATGGCACCGGCTTTGCCGGTGTTCGC                                                                                                                                                         <  5:204831/149‑1   GCGGCCAAGGCGCAGGCGGAGTTGTCGGCGCGCAGGACTGTGGGGTCGACCGTACTGATTCCTTGAGCCACACACATTCCCTGTAGGAGCGGGTTTACCCGCGAAGAAGCCACCGCGATGGATGGCACCGGCTTTGCCGGTGTTCGCGG                                                                                                                                                       >  2:277449/1‑149   GCGGCCAAGGCGCAGGCGGAGTGGTCGGCGCGCAGGACTGTGGGGTCGACCGTACTGATTCCTTGAGCCACACACATTCCCTGTAGGAGCGGGTTTACCCGCGAAGAAGCCACCGCGATGGATGGCACCGGCTTTGCCGGTGTTCGCGG                                                                                                                                                       <  7:136292/149‑1             CGCAGGCGGAGTTGTCGGCGCGCAGGACTGTGGGGTCGACCGTACTGATTCCTTGAGCCACACACATTCCCTGTAGGAGCGGGTTTACCCGCGAAGAAGCCACCGCGATGGATGGCACCGGCTTTGCCGGTGTTCGCGG                                                                                                                                                       <  8:184744/139‑1             CGCAGGCGGAGTTGTCGGCGCGCAGGACTGTGGGGTCGACCGTACTGATTCCTTGAGCCACACACATTCCCTGTAGGAGCGGGTTTACCCGCGAAGAAGCCACCGCGATGGATGGCACCGGCTTTGCCGGTGTTCGCGG                                                                                                                                                       >  7:184744/1‑139             CGCAGGCGGAGTTGTCGGCGCGCAGGACTGTGGGGTCGACCGTACTGATTCCTTGAGCCACACACATTCCCTGTAGGAGCGGGTTTACCCGCGAAGAAGCCACCGCGATGGATGGCACCGGCTTTGCCGGTGTTCG                                                                                                                                                          <  8:287181/136‑1             CGCAGGCGGAGTTGTCGGCGCGCAGGACTGTGGGGTCGACCGTACTGATTCCTTGAGCCACACACATTCCCTGTAGGAGCGGGTTTACCCGCGAAGAAGCCACCGCGATGGATGGCACCGGCTTTGCCGGTGTTCG                                                                                                                                                          >  7:287181/1‑136                                                                      CCACACACATTCCCTGTAGGAGCGGGTTTACCCGCGAAGAAGCCACCGCGATGGATGGCACCGGCTTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGACCCCACAGTCCTGC                                                                                    >  8:72811/1‑149                                                                                   CTGTAGGAGCGGGTTTACCCGCGAAGAAGCCACCGCGATGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGACCCCACAGTCCTGCGCGCCGACAACTC                                                                       >  3:206999/1‑149                                                                                           GCGGGTTTACCCGCGAAGAAGCCACCGCGATGGATGGCACCGGCTTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGACCCCACAGTCCTGCGCGCCGACAACTCCGCCTGCG                                                               <  7:72811/149‑1                                                                                             GGGTTTACCCGCGAAGAAGCCACCGCGATGGATGGCACCGGCTTTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGCCCCCACAGTCCTGCGCGCCGACAACTCCGCCTGCGCC                                                             >  3:59382/1‑149                                                                                                         GAAGAAGCCACCGCGATGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGACCCCACAGTCCTGCGCGCCGACAACTCCGCCTGCGCCTTGGCCGCCTCA                                                 <  4:206999/149‑1                                                                                                                                         TGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGACCCCACAGTCCTGCGCGCCGACAACTCCGCCTGCGCCTTGGCCGCCTCACTCAGCGGATACCGCTGCTGGATATCCACAG                  <  4:59382/148‑1                                                                                                                                                 TTCGCGGGTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGACCCCACAGTCCTGCGCGCCGACAACTCCGCCTGCGCCTTGGCCGCCTCACTCAGCGGATACCGCTGCTGGATATCCACAGCCAGCTTGC         >  3:236557/1‑149                                                                                                                                                  TCGCGGGTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGACCCCACAGTCCTGCGCGCCGACAACTCCGCCTGCGCCTTGGCCGCCTCACTCAGCGGATACCGCTGCTGGATATCCACAGCCAGCTTGC         >  6:89854/1‑148                                                                                                                                                    GCGGGTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGACCCCACAGTCCTGCGCGCCGACAACTCCGCCTGCGCCTTGGCCGCCTCACTCAGCGGATACCGCTGCTGGATATCCACAGCCAGCTTGCCAC      >  6:129096/1‑149                                                                                                                                                     CGGGTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGACCCCACAGTCCTGCGCGCCGACAACTCCGCCTGCGCCTTGGCCGCCTCACTCAGCGGATACCGCTGCTGGATATCCACAGCCAGCTTGCCACT     <  6:304965/149‑1                                                                                                                                                        GTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGACCCCACAGTCCTGCGCGCCGACAACTCCGCCTGCGCCTTGGCCGCCTCACTCAGCGGATACCGCTGCTGGATATCCACAGCCAGCTTGCCACTGCC  <  4:251509/149‑1                                                                                                                                                                                                                                                                                                              AGGCGGCCAAGGCGCAGGCGGAGTTGTCGGCGCGCAGGACTGTGGGGTCGACCGTACTGATTCCTTGAGCCACACACATTCCCTGTAGGAGCGGGTTTACCCGCGAAGAAGCCACCGCGATGGATGGCACCGGCTTTGCCGGTGTTCGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/82218‑82067 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggTAAACCCGCTCCTACAGGGAATGTGTGTGGCTCAAGGAATCAGTACGGTCGACCCCACAGTCCTGCGCGCCGACAACTCCGCCTGCGCCTTGGCCGCCTCACTCAGCGGATACCGCTGCTGGATATCCACAGCCAGCTTGCCACTGCC  >  NC_002947/82120‑82267

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.