New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	135570 =	62 (1.230)	5 (0.100)	4/248	NT	7.8%	coding (1466/1938 nt)	PP_0129	GGDEF domain‑containing protein
	?	NC_002947	135606 =	58 (1.200)					coding (1502/1938 nt)	PP_0129	GGDEF domain‑containing protein

AGCCAGATGACCATAGTTGTCGTTGATGCGTTTGAAATGGTCCAGATCAAGAATCGCCATCGCCAGATGGCCGCCGTTTTCCTGCCAGTCAAGCATTTCGCGTTCGACTCGCTCGCTCCAGGCCGCACGGTTGGGCAGGCCGGTGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/135718‑135570 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagcgAGCGAGTCGAACGCGAAATGCTTGACTGGCAGGAAAACGGCGGCCATCTGGCGATGGCGATTCTTGATCTGGACCATTTCAAACGCATCAACGACAACTATGGTCATCTGGCTGGGGACAAGGTCCTCAAGATCGTGGCCGACCAGT  >  NC_002947/135606‑135752                                                                                                                                                                                                                                                                                                          AGCCAGATGACCATAGTTGTCGTTGATGCGTTTGAAATGGTCCAGATCAAGAATCGCCATCGCCAGATGGCCGCCGTTTTCCTGCCAGTCAAGCATTTCGCGTTCGACTCGCTCGCTCCAGGCCGCTCGGTTGGGCAGGCCGGTGAGCG                                                                                                                                                     <  7:47633/149‑1                GTTGTCGTTGATGCGTTTGGAATGGTCCAGATCAAGAATCGCCATCGCCAGATGGCCGCCGTTTTCCTGCCAGTCAAGCATTTCGCGTTCGACTCGCTCGCTCCAGGCCGCACGGTTGGGCAGGCCGGTGAGC                                                                                                                                                      >  3:316204/1‑133                GTTGTCGTTGATGCGTTTGGAATGGTCCAGATCAAGAATCGCCATCGCCAGATGGCCGCCGTTTTCCTGCCAGTCAAGCATTTCGCGTTCGACTCGCTCGCTCCAGGCCGCACGGTTGGGCAGGCCGGTGAGC                                                                                                                                                      <  4:316204/133‑1                                                                                                       gctctCTCGCTCGCTCCAGGCCGCACGGTTGGGCAGGCCGGTGAGCGAGCGAGTCGAACGCGAAATGCTTGACTGGCAGGAAAACGGCGGCCATCTGGCGATGGCGATTCTTGATCTGGACCATTTCAAACGCATCAACGACAACTATG                                               <  1:116289/144‑1                                                                                                             TCGCTCGCTCCAGGCCGCACGGTTGGGCAGGCCGGTGAGCGAGCGAGTCGAACGCGAAATGCTTGACTGGCAGGAAAACGGCGGCCATCTGGCGATGGCGATTCTTGATCTGGACCATTTCAAACGCATCAACGACAACTATG                                               >  2:116289/1‑143                                                                                                                   GCTCCAGGCCGCACGGTTGGGCAGGCCGGTGAGCGAGCGAGTCGAACGCGAAATGCTTGACTGGCAGGAAAACGGCGGCCATCTGGCGATGGCGATTCTTGATCTGGACCATTTCAAACGCATCAACGACAACTATGGTCATCTGGCTG                                   >  2:161226/1‑149                                                                                                                   GCTCCAGGCCGCACGGTTGGGCAGGCCGGT‑‑‑‑GAGCGAGTCGAACGCGAAATGCTTGACTGGCAGGAAAACGGCGGCCATCTGGCGATGGCGATTCTTGATCTGGACCATTTCAAACGCATCAACGACAACTATGGTCATCTGGCTGGGGA                               >  2:158096/1‑149                                                                                                                           CCGCACGGTTGGGCAGGCCGGTGAGCGAGCGAGTCGAACGCGAAATGCTTGACTGGCAGGAAAACGGCGGCCATCTGGCGATGGCGATTCTTGATCTGGACCATTTCAAACGCATCAACGACAACTATGGTCATCTGGCTGGGGACAAG                           <  1:161226/149‑1                                                                                                                                                   GCGAGCGAGTCGAACGCGAAATGCTTGACTGGCAGGAAAACGGCGGCCATCTGGCGATGGCGATTCTTGATCTGGACCATTTCAAACGCATCAACGACAACTATGGTCATCTGGCTGGGGACAAGGTCCTC                     <  1:230346/131‑1                                                                                                                                                   GCGAGCGAGTCGAACGCGAAATGCTTGACTGGCAGGAAAACGGCGGCCATCTGGCGATGGCGATTCTTGATCTGGACCATTTCAAACGCATCAACGACAACTATGGTCATCTGGCTGGGGACAAGGTCCTC                     >  2:230346/1‑131                                                                                                                                                    CGAGCGAGTCGAACGCGAAATGCTTGACTGGCAGGAAAACGGCGGCCATCTGGCGATGGCGATTCTTGATCTGGACCATTTCAAACGCATCAACGACAACTATGGTCATCTGGCTGGGGACAAGGTCCTCAAGATCGTGGCCGACCAGT  >  3:264634/1‑149                                                                                                                                                                                                                                                                                                          AGCCAGATGACCATAGTTGTCGTTGATGCGTTTGAAATGGTCCAGATCAAGAATCGCCATCGCCAGATGGCCGCCGTTTTCCTGCCAGTCAAGCATTTCGCGTTCGACTCGCTCGCTCCAGGCCGCACGGTTGGGCAGGCCGGTGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/135718‑135570 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagcgAGCGAGTCGAACGCGAAATGCTTGACTGGCAGGAAAACGGCGGCCATCTGGCGATGGCGATTCTTGATCTGGACCATTTCAAACGCATCAACGACAACTATGGTCATCTGGCTGGGGACAAGGTCCTCAAGATCGTGGCCGACCAGT  >  NC_002947/135606‑135752

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.