New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	588318 =	58 (1.150)	4 (0.080)	4/244	NT	7.3%	coding (328/876 nt)	PP_0498	hypothetical protein
	?	NC_002947	588357 =	46 (0.970)					coding (289/876 nt)	PP_0498	hypothetical protein

CCGCATTCGTCTTGGGGGGCGCGCGTTCCGACTTTACCCGGCTCAACCCCCTGCTTTATCGCCTGCAAGCCGCGGGCATTGGTTCACTCACTGGCAATCTGTCAGGTCACAGCCTCGCCAGCGAGCCAGGCGCAATGGCGCCGTCACTGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/588470‑588318 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcgaGGCTGTGACCTGACAGATTGCCAGTGAGTGAACCAATGCCCGCGGCTTGCAGGCGATAAAGCAGGGGGTTGAGCCGGGTAAAGTCGGAACGCGCGCCCCCCAAGACGAATGCGGGAGCTGCGCGCTCGATATCAGGTACCAGCAATCG  >  NC_002947/588357‑588504                                                                                                                                                                                                                                                                                                               CCGCATTCGTCTTGGGGGGCGCGCGTTCCGACTTTACCCGGCTCAACCCCCTGCTTTATCGCCTGCAAGCCGCGGGCATTGGTTCACTCACTGGCAATCTGTCAGGTCACAGCCTCGCCAGCGAGCCAGGCGCAATGGCGCCGTCACT                                                                                                                                                           <  7:280931/148‑1                                                                                                                 CCTCGCCAGCGAGCCAGGCGCAATGGCGCCGTCACTGGCGAGGCTGTGACCTGACAGATTGCCAGTGAGTGAACCAATGCCCGCGGCTTGCAGGCGATAAAGCAGGGGGTTGAGCCGGGTAAAGTCGGAACGCGCGCCCCCCAAGACG                                           >  4:163907/1‑148                                                                                                                  CTCGCCAGCGAGCCAGGCGCAATGGCGCCGTCACTGGCGAGGCTGTGACCTGACAGATTGCCAGTGAGTGAACCAATGCCAGCGGCTTGCAGGCGATAAAGCAGGGGGTTGAGCCGGGTAAAGTCGGAACGCGCGCCCCCCAAGACGAA                                         >  1:190256/1‑149                                                                                                                   TCGCCAGCGAGCCAGGCGCAATGGCGCCGTCACTGGCGAGGCTGTGACCTGACAGATTGCCAGTGAGTGAACCAATGCCCGCGGCTTGCAGGCGATAAAGCAGGGGGTTGAGCCGGGTAAAGTCGGAACGAGCGACCCCCAAGACGAAT                                        >  8:1967/1‑149                                                                                                                     GCCAGCGAGCCAGGCGCAATGGCGCCGTCACTGGCGAGGCTGTGACCTGACAGATTGCCAGTGAGTGAACCAATGCCCGCGGCTTGCAGGCGATAAAGCAGGGGGTTGAGCCGGGTAAAGTCGGAACGCGCGCCCCCCAAGACGAATGC                                      >  6:54496/1‑149                                                                                                                                                   CTGGCGAGGCTGTGACCTGACAGATTGCCAGTGAGTGAACCAATGCCCGCGGCTTGCAGGCGATAAAGCAGGGGGTTGAGCCGGGTAAAGTCGGAACGCGCGCCCCCCAAGACGAATGCGGGAGCTGCGCGCTCGATATCAGGTACCAG        >  2:296955/1‑149                                                                                                                                                    TGGCGAGGCTGTGACCTGACAGATTGCCAGTGAGTGAACCAATGCCCGCGGCTTGCAGGCGATAAAGCAGGGGGTTGAGCCGGGTAAAGTCGGAACGCGCGCCCCCCAAGACGAATGCGGGAGCTGCGCGCTCGATATCAGGTACCAG        >  4:131698/1‑148                                                                                                                                                         AGGCTGTGACCTGACAGATTGCCAGTGAGTGAACCAATGCCCGCGGCTTGCAGGCGATAAAGCAGGGGGTTGAGCCGGGTAAAGTCGGAACGCGCGCCCCCCAAGACGAATGCGGGAGCTGCGCGCTCGATATCAGGTACCAGCAATCG  >  1:161184/1‑149                                                                                                                                                         AGGCTGTGACCTCACAGATTGCCAGTGACTGAACCAATGCCCGCGGCTTGCAGGCGATAAAGCACGGGGTTGAGCCGGGTAAAGTCGGAACGCGCGCCCCCCAAGACGAATGCGGGAGCTGCCCGCTCGATATCAGGTACCAGCAATCG  >  4:277423/1‑149                                                                                                                                                                                                                                                                                                               CCGCATTCGTCTTGGGGGGCGCGCGTTCCGACTTTACCCGGCTCAACCCCCTGCTTTATCGCCTGCAAGCCGCGGGCATTGGTTCACTCACTGGCAATCTGTCAGGTCACAGCCTCGCCAGCGAGCCAGGCGCAATGGCGCCGTCACTGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/588470‑588318 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcgaGGCTGTGACCTGACAGATTGCCAGTGAGTGAACCAATGCCCGCGGCTTGCAGGCGATAAAGCAGGGGGTTGAGCCGGGTAAAGTCGGAACGCGCGCCCCCCAAGACGAATGCGGGAGCTGCGCGCTCGATATCAGGTACCAGCAATCG  >  NC_002947/588357‑588504

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.