New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	615051 =	73 (1.450)	4 (0.080)	4/246	NT	5.2%	coding (196/888 nt)	ispA	farnesyl diphosphate synthase
	?	NC_002947	615099 =	76 (1.580)					coding (148/888 nt)	ispA	farnesyl diphosphate synthase

CAGCCCTCGAACCGCTGTTCATCGCCCCGAGCAAAGAGCTGGAACGCCTTTACGCCGCCATGCGCTACAGCGTGATGAACGGCGGCAAACGCGTGCGCCCGTTGCTGGCCTACGCGGCCTGCGAAGCCTTGGGCGCCCCGGCCGAACAGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/615203‑615051 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggccaGCAACGGGCGCACGCGTTTGCCGCCGTTCATCACGCTGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCGAGGGCTGCGTCGAC‑GCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCAT  >  NC_002947/615099‑615246                                                                                                                                                                                                                                                                                                                CAGCCCTCGAACCGCTGTTCATCGCCCCGAGCAAAGAGCTGGAACGCCTTTACGCCGCCATGCGCTACAGCGTGATGAACGGCGGCAAACGCGTGCGCCCGTTGCTGGCCTACGCGGCCTGCGAAGCCTTGGGCGCCCCGGCCGAACAG                                                                                                                                                           <  2:201779/149‑1     CCTCGAACCGCTGTTCATCGCCCCGAGCAAAGAGCTGGAACGCCTTTACGCCGCCATGCGCTACAGCGTGATGAACGGCGGCAAACGCGTGCGCCCGTTGCTGGCCTACGCGGCCTGCGAAGCCTTGGGCGCCCCGGCCGAACAGGCC                                                                                                                                                        >  3:236080/1‑148       TCGAACCGCTGTTCATCGCCCCGAGCAAAGAGCTGGAACGCCTTTACGCCGCCATGCGCTACAGCGTGATGAACGGCGGCAAACGCGTGCGCCCGTTGCTGGCCTACGCGGCCTGCGAAGCCTTGGGCGCCCCGGCCGAACAGGCCAcc                                                                                                                                                     >  7:58900/1‑147                                                                                                            GCCTACGCGGCCTGCGAAGCCTTGGGCGCCCCGGCCGAACAGGCCAGCAACGGGCGCACGCGTTTGCCGCCGTTCATCACGCTGTAGCGCATGGCGGCGTAAAGGCGTTCCA                                                                                     <  7:176213/112‑1                                                                                                            GCCTACGCGGCCTGCGAAGCCTTGGGCGCCCCGGCCGAACAGGCCAGCAACGGGCGCACGCGTTTGCCGCCGTTCATCACGCTGTAGCGCATGGCGGCGTAAAGGCGTTCCA                                                                                     >  8:176213/1‑112                                                                                                                ACGCGGCCTGCGAAGCCTTGGGCGCCCCGGCCGAACAGGCCAGCAACGGGCGCACGCGTTTGCCGCCGTTCATCACGCTGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCGAGGGCTGCG                                            >  3:224576/1‑149                                                                                                                                            GGCCGAACAGGCCAGCAACGGGCGCACGCGTTTGCCGCCGTTCATCACGCTGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCGAGGGCTGCGTCGAC‑GCGCGCCTGGCAACTGGCCTGGT               <  4:224576/149‑1                                                                                                                                                    AGGCCAGCAACGGGCGCACGCGTTTGCCGCCGTTCATCACGCTGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCGAGGGCTGCGTCGAC‑GCGCGCCTGGCAACTGGCCTGGTAGGTGCC        >  4:2224/1‑148                                                                                                                                                      GCCAGCAACGGGCGCACGCGTTTGCCGCCGTTCATCACGCTGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCGAGGGCTGCGTCGACAGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAA      <  1:201779/149‑1                                                                                                                                                      GCCAGCAACGGGCGCACGCGTTTGCCGCCGTTCATCACGCTGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCGAGGGCTGCGTCGAC‑GCGCGCCTGGCAACTGGCCTGGTAGGTGCCAAT     >  2:108414/1‑149                                                                                                                                                       CCAGCAACGGGCGCACGCGTTTGCCGCCGTTCATCACGCTGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCGAGGGCTGCGTCGAC‑GCGCGCCTGGCAACTGGCCTGGTAGGTGCCAAT     >  5:101785/1‑148                                                                                                                                                        CAGCAACGGGCGCACGCGTTTGCCGCCGTTCATCACGCTGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCGAGGGCTGCGTCGAC‑GCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCA   >  1:175587/1‑149                                                                                                                                                        CAGCAACGGGCGCACGCGTGTGCCGCCGTTCATCACGCTGTAGCGCATGGCGGCGTAAAGGCGTTCCTGCTCTTTGCTCGGGGCGATGAACAGCGTTTCGATGGCTGCGTCGAC‑GCGCGGCTGGCAACTGGCCTGGTAGGTGCCAATCA   <  6:175289/149‑1                                                                                                                                                         AGCAACGGGCGCACGCGTTTGCCGCCGTTCATCACGCTGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCGAGGGCTGCGTCGAC‑GCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCAT  <  7:266574/149‑1                                                                                                                                                                                                                                                                                                                CAGCCCTCGAACCGCTGTTCATCGCCCCGAGCAAAGAGCTGGAACGCCTTTACGCCGCCATGCGCTACAGCGTGATGAACGGCGGCAAACGCGTGCGCCCGTTGCTGGCCTACGCGGCCTGCGAAGCCTTGGGCGCCCCGGCCGAACAGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/615203‑615051 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggccaGCAACGGGCGCACGCGTTTGCCGCCGTTCATCACGCTGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCGAGGGCTGCGTCGAC‑GCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCAT  >  NC_002947/615099‑615246

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.