New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	669376 =	63 (1.250)	6 (0.130)	6/240	NT	9.9%	coding (818/2355 nt)	pbpC	peptidoglycan glycosyltransferase
	?	NC_002947	669419 =	50 (1.070)					coding (861/2355 nt)	pbpC	peptidoglycan glycosyltransferase

TCGAGCCCAGGTACGCGCGCACCGCCATGCTCTGCGCCTCGACCACCAGAATGGCGGCCGAGGTACGCTCCGGCAGCCGTGCGCGCCAGCCCAGCAGCAAGTCTTCGAGGCGCCGCTGAAGCGCAGCGTCAAGCGTGGTACGGATCAGCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/669528‑669376 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcagcggcgCCTCGAAGACTTGCTGCTGGGCTGGCGCGCACGGCTGCCGGAGCGTACCTCGGCCGCCATTCTGGTGGTCGAGGCGCAGAGCATGGCGGTGCGCGCGTACCTGGGCTCGATAGATTTGTCTGATGAGCGCCGCTTTGGCCATGTCGA  >  NC_002947/669419‑669565                                                                                                                                                                                                                                                                                                              TCGAGCCCAGGTACGCGCGCACCGCCATGCTCTGCGCCTCGACCACCAGAATGGCGGCCGAGGTACGCTCCGGCAGCCGTGCGCGCCAGCCCAGCAGCAAGTCTTCGAGGCGCCGCTGAAGCGCAGCGTCAAGCGTGGTACGGAT                                                                                                                                                             <  2:93694/145‑1    AGCCCAGGTACGCGCGCACCGCCATGCTCTGCGCCTCGACCACCAGAATGGCGGCCGAGGTACGCTCCGGCAGCCGTGCGCGCCAGCCCAGCAGCAAGTCTTCGAGGCGCCGCTGAAGCGCAGCGTCAAGCGTGGTACGGATCAGCGGC                                                                                                                                                      >  4:19623/1‑149                                                                                     GCCAGCCCAGCAGCAAGTCTTCGAGGCGCCGCTGAAGCGCAGCGTCAAGCGTGGTACGGATCAGCGGCGCCTCGAAGACTTGCTGCTGGGCTGGCGCGCACGGCTGCCGGAGCGTACCTCGGCCGCCATTCTGGTG                                                                                  <  3:179429/136‑1                                                                                     GCCAGCCCAGCAGCAAGTCTTCGAGGCGCCGCTGAAGCGCAGCGTCAAGCGTGGTACGGATCAGCGGCGCCTCGAAGACTTGCTGCTGGGCTGGCGCGCACGGCTGCCGGAGCGTACCTCGGCCGCCATTCTGGTG                                                                                  >  4:179429/1‑136                                                                                                                 CCGCTGAAGCGCAGCGTCAAGCGTGGTACGGATCAGCGGCGCCTCGAAGACTTGCTGCTGGGCTGGCGCGCACGGCTGCCGGAGCGTACCTCGGCCGCCATTCTGGTGGTCGAGGCGCAGAGCATGGCGGTGCGCGCGTACCTGGGCTC                                         >  7:226116/1‑149                                                                                                                       AAGCGCAGCGTCAAGCGTGGTACGGATCAGCGGCGCCTCGAAGACTTGCTGCTGGGCTGGCGCGCACGGCTGCCGGAGCGTACCTCGGCCGCCATTCTGGTGGTCGAGGCGCAGAGCATGGCG                                                             <  3:43240/123‑1                                                                                                                       AAGCGCAGCGTCAAGCGTGGTACGGATCAGCGGCGCCTCGAAGACTTGCTGCTGGGCTGGCGCGCACGGCTGCCGGAGCGTACCTCGGCCGCCATTCTGGTGGTCGAGGCGCAGAGCATGGCG                                                             >  4:43240/1‑123                                                                                                                        AGCGCAGCGTCAAGCGTGGTACGGATCAGCGGCGCCTCGAAGACTTGCTGCTGGGCTGGCGCGCACGGCTGCCGGAGCGTACCTCGGCCGCCATTCTGGTGGTCGAGGCGCAGAGCATGGCGGTGCGCGCGTACCTGGGCTCGATAGAT                                  <  8:226116/149‑1                                                                                                                                                  CAGCGGCGCCTCGAAGACTTGCTGCTGGGCTGGCGCGCACGGCTGCCGGAGCGTACCTCGGCCGCCATTCTGGTGGTCGAGGCGCAGAGCATGGCGGTGCGCGCGTACCTGGGCTCGATAGATTTGTCTGATGAGCGCCGCTTTGGC          <  6:20854/147‑1                                                                                                                                                  CAGCGGCGCCTCGAAGACTTGCTGCTGGGCTGGCGCGCACGGCTGCCGGAGCGTACCTCGGCCGCCATTCTGGTGGTCGAGGCGCAGAGCATGGCGGTGCGCGCGTACCTG                                              <  5:136675/111‑1                                                                                                                                                  CAGCGGCGCCTCGAAGACTTGCTGCTGGGCTGGCGCGCACGGCTGCCGGAGCGTACCTCGGCCGCCATTCTGGTGGTCGAGGCGCAGAGCATGGCGGTGCGCGCGTACCTG                                              >  6:136675/1‑111                                                                                                                                                     CGGCGCCTCGAAGACTTGCTGCTGGGCTGGCGCGCACGGCTGCCGGAGCGTACCTCGGCCGCCATTCTGGTGGTCGAGGCGCAGAGCATGGCGGTGCGCGCGTACCTGGGCTCGATAGATTTGTCTGATGAGCGCCGCTTTGGCCATGT     <  1:42545/149‑1                                                                                                                                                       GCGCCTCGAAGACTTGCTGCTGGGCTGGCGCGCACGGCTGCCGGAGCGTACCTCGGCCGCCATTCTGGTGGTCGAGGCGCAGAGCATGGCGGTGCGCGCGTACCTGGGCTCGATAGATTTGTCTGATGAGCGCCGCTTTGGCCATGTC    >  4:145137/1‑148                                                                                                                                                        CGCCTCGAAGACTTGCTGCTGGGCTGGTGCGCACGGCTGCCGGAGCGTACCTCGGCCGCCATTCTGGTGGTCGAGGCGCAGAGCATGGCGGTGCGCGCGTACCTGGGCTCGATAGATTTGTCTGATGAGCGCCGCTTTGGCCATGTCGA  <  7:138082/149‑1                                                                                                                                                                                                                                                                                                              TCGAGCCCAGGTACGCGCGCACCGCCATGCTCTGCGCCTCGACCACCAGAATGGCGGCCGAGGTACGCTCCGGCAGCCGTGCGCGCCAGCCCAGCAGCAAGTCTTCGAGGCGCCGCTGAAGCGCAGCGTCAAGCGTGGTACGGATCAGCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/669528‑669376 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcagcggcgCCTCGAAGACTTGCTGCTGGGCTGGCGCGCACGGCTGCCGGAGCGTACCTCGGCCGCCATTCTGGTGGTCGAGGCGCAGAGCATGGCGGTGCGCGCGTACCTGGGCTCGATAGATTTGTCTGATGAGCGCCGCTTTGGCCATGTCGA  >  NC_002947/669419‑669565

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.