New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1190854	57 (1.130)	3 (0.060)	3/248	NT	5.1%	coding (376/966 nt)	xcpX	type II secretion system protein K
	?	NC_002947	= 1190882	58 (1.200)					coding (404/966 nt)	xcpX	type II secretion system protein K

GGCAAGCCTTGCGCGGGCAGCCGCTGAACTACGACTTTGGCGCTGGCCAGGCGCAGTTGCGGGTACGCGACCAGCACACCTGCTTCAACGTCAATGCATTGCTCGGCGCCGACGGCGAACGCGCCGAGCGCCAGTTGCGTTACTTACTGGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1190702‑1190854 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcaTCGACCAGGCGTTCGGCCGCCATGTCATTGCCCAGTAAGTAACGCAACTGGCGCTCGGCGCGTTCGCCGTCGGCGCCGAGCAATGCATTGACGTTGAAGCAGGTGTGCTGGTCGCGTACCCGCAACTGCGCCTGGCCAGCGCCAAAG  <  NC_002947/1190882‑1190736                                                                                                                                                                                                                                                                                                              GGCAAGCCTTGCGCGGGCAGCCGCTGAACTACGACTTTGGCGCTGGCCAGGCGCAGTTGCGGGTACGCGACCAGCACACCTGCTTCAACGTCAATGCATTGCTCGGCGCCGACGGCGAACGCGCCGAGCGCCAGTTGCGTTACTTACTG                                                                                                                                                         >  3:61091/1‑149  GCAAGCCTTGCGCGGGCAGCCGCTGAACTACGACTTTGGCGCTGGCCAGGCGCAGTTGCGGGTACGCGACCAGCACACCTGCTTCAACGTCAATGCATTGCTCGGCGCCGACGGCGAACGCGCCGAGCGCCAGTTGCGTTACTTACTGG                                                                                                                                                        <  6:3073/149‑1                                               CCAGGCGCAGTTGCGGGTACTCGACCAGCACACCTGCTTCAACGTCAATGCATTGCTCGGCGCCGACGGCGAACGCGCCGAGCGCCAGTTGAGTTACTTACTGGGCATCGACCAGGCGTTCGGCCGCCATGTCATTGCCCAGTAAGTAA                                                                                                           <  5:243989/149‑1                                                                        CAGCACACCTGCTTCAACGTCAATGCATTGCTCGGCGCCGACGGCGAACGCGCCGAGCGCCAGTTGCGTTACTTACTGGGCATCGACCAGGCGTTCGGCCGCCATGTCATTGCC                                                                                                                     >  1:281453/1‑114                                                                        CAGCACACCTGCTTCAACGTCAATGCATTGCTCGGCGCCGACGGCGAACGCGCCGAGCGCCAGTTGCGTTACTTACTGGGCATCGACCAGGCGTTCGGCCGCCATGTCATTGCC                                                                                                                     <  2:281453/114‑1                                                                                                                                                       GCATCGACCAGGCGTTCGGCCGCCATGTCATTGCCCAGTAAGTAACGCAACTGGCGCTCGGCGCGTTCGCCGTCGGCGCCGAGCAATGCATTGACGTTGAAGCAGGTGTGCTGGTCGCGTACCCGCAACTGCGCCTGGCCAGCGCCAAA   <  6:82222/149‑1                                                                                                                                                        CATCGACCAGGCGTTCGGCCGCCATGTCATTGCCCAGTAAGTAACGCAACTGGCGCTCGGCGCGTTCGCCGTCGGCGCCGAGCAATGCATTGACGTTGAAGCAGGTGTGCTGGTCGCGTACCCGCAACTGCGCCTGGCCAGCGCCAAAG  >  7:160580/1‑149                                                                                                                                                                                                                                                                                                              GGCAAGCCTTGCGCGGGCAGCCGCTGAACTACGACTTTGGCGCTGGCCAGGCGCAGTTGCGGGTACGCGACCAGCACACCTGCTTCAACGTCAATGCATTGCTCGGCGCCGACGGCGAACGCGCCGAGCGCCAGTTGCGTTACTTACTGGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1190702‑1190854 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcaTCGACCAGGCGTTCGGCCGCCATGTCATTGCCCAGTAAGTAACGCAACTGGCGCTCGGCGCGTTCGCCGTCGGCGCCGAGCAATGCATTGACGTTGAAGCAGGTGTGCTGGTCGCGTACCCGCAACTGCGCCTGGCCAGCGCCAAAG  <  NC_002947/1190882‑1190736

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.