| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1460799 = | 45 (0.890) | 4 (0.080) | 4/248 | NT | 7.8% | coding (666/1167 nt) | algJ | alginate O‑acetylase AlgJ |
| ? | NC_002947 | 1460870 = | 51 (1.050) | coding (595/1167 nt) | algJ | alginate O‑acetylase AlgJ | |||||
CCTATGGGTGCCGAAGTGGCGGCGCAGGCGCTGGCCGAAGCGGTCAGCCGCCAGAGCCTGCTCAACGGCGACCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1460873‑1460799‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccaTAGGCGTCCAGTGGGTATCGGTACGCAGGAATACCTGGCCGCGGGCCTTGGCCTGCTCCATCGGTGCCATCAGGTCCGGTGCGAACACGTTGGCCTGGCGTGCCTGGGCATGGAACTGGTTGTACAGGTCGTCATGCA > NC_002947/1460870‑1461007 CCTATGGGTGCCGAAGTGGCGGCGCAGGCGCTGGCCGAAGCGGTCAGCCGCCAGAGCCTGCTCAACGGCGACCCATAGGCGTCCAGTGGGTATCGGTACGCAGGAATACCTGGCCGCGGGCCTTG > 1:189561/1‑125CCTATGGGTGCCGAAGTGGCGGCGCAGGCGCTGGCCGAAGCGGTCAGCCGCCAGAGCCTGCTCAACGGCGACCCATAGGCGTCCAGTGGGTATCGGTACGCAGGAATACCTGGCCGCGGGCCTTG < 2:189561/125‑1 GCGCTGGCCGAAGCGGTCAGCCGCCAGAGCCTGCTCAACGGCGACCCATAGGCGTCCAGTGGGTATCGGTACGCAGGAATACCTGGCCGCGGGCCTTGGCCTGCTCCATCGGTGCCATCAGGTCCGGTGCGAACACGTTGGCCTGGC > 1:59465/1‑147 GCGCTGGCCGAAGCGGTCAGCCGCCAGAGCCTGCTCAACGGCGACCCATAGGCGTCCAGTGGGTATCGGTACGCAGGAATACCTGGCCGCGGGCCTTGGCCTGCTCCATCGGTGCCATCAGGTCCGGTGCGAACACGTTGGCCTGGC < 2:59465/147‑1 ACCCATAGGCGTCCAGTGGGTATCGGTACGCAGGAATACCTGGCCGCGGGCCTTGGCCTGCTCCATCGGTGCCATCAGGTCCGGTGCGAACACGTTGGCCTGGCGTGCCTGGGCATGGAACTGGTTGTACAGGTCGTCATGCA < 5:40/143‑1 ACCCATAGGCGTCCAGTGGGTATCGGTACGCAGGAATACCTGGCCGCGGGCCTTGGCCTGCTCCATCGGTGCCATCAGGTCCGGTGCGAACACGTTGGCCTGGCGTGCCTGGGCATGGAACTGGTTGTACAGGTCGTCATGCA > 6:40/1‑143 CCTATGGGTGCCGAAGTGGCGGCGCAGGCGCTGGCCGAAGCGGTCAGCCGCCAGAGCCTGCTCAACGGCGACCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1460873‑1460799‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccaTAGGCGTCCAGTGGGTATCGGTACGCAGGAATACCTGGCCGCGGGCCTTGGCCTGCTCCATCGGTGCCATCAGGTCCGGTGCGAACACGTTGGCCTGGCGTGCCTGGGCATGGAACTGGTTGTACAGGTCGTCATGCA > NC_002947/1460870‑1461007 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |