New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 1574617 = | 58 (1.150) | 4 (0.080) | 4/244 | NT | 6.8% | coding (398/525 nt) | pcaP | porin |
? | NC_002947 | 1574656 = | 54 (1.130) | coding (359/525 nt) | pcaP | porin |
CTGTGCCTGTGGGTCGGTGAGGCGCTGGCAGTGCAGTCGACAACGCTATGGCTCGGCGCCGGGCTGGGGGCGTTCGTGGTGGGCTGGATCATCCAGTTCATCGGCCATTACTACGAAGGCCGCAAACCGGCATTTGTCGACGACGTGAGCGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1574771‑1574617 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcctTCGTAGTAATGGCCGATGAACTGGATGATCCAGCCCACCACGAACGCCCCCAGCCCGGCGCCGAGCCATAGCGTTGTCGACTGCACTGCCAGCGCCTCACCGACCCACAGGCACAGGCCCAGCAACAGCCCCATCACCAGCCCGAAG > NC_002947/1574656‑1574802 CTGTGCCTGTGGGTCGGTGAGGCGCTGGCAGTGCAGTCGACAACGCTATGGCTCGGCGCCGGGCTGGGGGCGTTCGTGGTGGGCGGGATCATCCAGTTCATCGGCCATTACTACGAAGGCCGCAAACCGGCATTTGTCGACGACGTGAG < 7:245130/149‑1 TGCCTGTGGGTCGGTGAGGCGCTGGCAGTGCAGTCGACAACGCTATGGCTGGGCGCCGGGCTGGGGGCGTTCGTGGTGGGCTGGATCATCCAGTTCATCGGCCATTACTACGAAGGCCGCATACCGGCATTTGTCGACGACGTGAGCGG < 1:10258/149‑1 TGCCTGTGGGTCGGTGAGGCGCTGGCAGTGCAGTCGACAACGCTATGGCTCGGCGCCGGGCTGGGGGCGTTCGTGGTGGGCTGGATCATCCAGTTCATCGGCCATTACTACGAAGGCCGCAAACCGGCATTTGTCGACGACGTGAGC < 1:304209/147‑1 GCCTGTGGGTCGGTGAGGCGCTGGCAGTGCAGTCGACAACGCTATGGCTCGGCGCCGGGCTGGGGGCGTTCGTGGTGGGCTGGATCATCCAGTTCATCGGCCATTACTACGAAGGCCGCAAACCGGCATTTGTCGACGACGTGAGCGGC > 5:185252/1‑149 TGTGGGTCGGTGAGGCGCTGGCAGTGCAGTCGACAACGCTATGGCTCGGCGCCGGGCTGGGGGCGTTCGTGGTGGGCTGGATCATCCAGTTCATCGGCCATTACTACGAAGGCCGCAAACCGGCATTTGTCGACGACGTGAGCGGCCT > 2:321232/1‑148 TACGAAGGCCGCAAACCGGCATTTGTCGACGACGTGAGCGGCCTTCGTAGTAATGGCCGATGAACTGGATGATCCAGCCCACCACGAACGCCCCCAG < 1:56841/97‑1 TACGAAGGCCGCAAACCGGCATTTGTCGACGACGTGAGCGGCCTTCGTAGTAATGGCCGATGAACTGGATGATCCAGCCCACCACGAACGCCCCCAG > 2:56841/1‑97 GAAGGCCGCAAACCGGCATTTGTCGACGACGTGAGCGGCCTTCGTAGTAATGGCCGATGAACTGGATGATCCAGCCCACCACGAACGCCCCCAGCCCGGCGCCGAGCCATAGCGTTGTCGACTGCACTGCCAGCGCCTCACCGACCCA > 5:192287/1‑148 TCGACGACGTGAGCGGCCTTCGTAGTAATGGCCGATGAACTGGATGATCCAGCCCACCACGAACGCCCCCAGCCCGGCGCCGAGCCATAGCGTTGTCGACTGCACTGCCAGCGCCTCACCGACCCACAGGCACAGGCCCAGCAACAGC < 6:192287/148‑1 CCTTCGTAGTTATTGCCTATCAACTGGATGATCCAGCCCACCACGAACGCACCCAGCCCGGCGCCGAGCCATAGCTTTGTCGACTGCACTGCCAGCGCCTCACCGACCCACAGGCACAGG < 8:209756/120‑1 CCTTCGTAGTAATGGCCGATGAACTGGATGATCCAGCCCACCACGAACGCCCCCAGCCCGGCGCCGAGCCATAGCGTTGTCGACTGCACTGCCAGCGCCTCACCGACCCACAGGCACAGG > 7:209756/1‑120 CTTCGTAGTAATGGCCGATGAACTGGATGATCCAGCCCACCACGAACGCCCCCAGCCCGGCGCCGAGCCATAGCGTTGTCGACTGCACTGCCAGCGCCTCACCGACCCACAGGCACAGGCCCAGCAACAGCCCCATCACCAGCCCGAAG < 5:118507/149‑1 TTCGTAGTAATGGCCGATGAACTGGATGATCCAGCCCACCACGAACGCCCCCAGCCCGGCGCCGAGCCATAGCGTTGTCGACTGCACTGCCAGCGCCTCACCGACCCACAGGCACAGGCCCAGCAACAGCCCCATCACCAGCCCGAA < 7:157276/147‑1 TTCGTAGTAATGGCCGATGAACTGGATGATCCAGCCCACCACGAACGCCCCCAGCCCGGCGCCGAGCCATAGCGTTGTCGACTGCACTGCCAGCGCCTCACCGACCCACAGGCACAGGCCCAGCAACAGCCCCATCACCAGCCCGAA > 8:157276/1‑147 CTGTGCCTGTGGGTCGGTGAGGCGCTGGCAGTGCAGTCGACAACGCTATGGCTCGGCGCCGGGCTGGGGGCGTTCGTGGTGGGCTGGATCATCCAGTTCATCGGCCATTACTACGAAGGCCGCAAACCGGCATTTGTCGACGACGTGAGCGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1574771‑1574617 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcctTCGTAGTAATGGCCGATGAACTGGATGATCCAGCCCACCACGAACGCCCCCAGCCCGGCGCCGAGCCATAGCGTTGTCGACTGCACTGCCAGCGCCTCACCGACCCACAGGCACAGGCCCAGCAACAGCCCCATCACCAGCCCGAAG > NC_002947/1574656‑1574802 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |