New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1673146	61 (1.210)	4 (0.080)	4/248	NT	6.5%	coding (190/897 nt)	xerD	tyrosine recombinase XerD
	?	NC_002947	= 1673174	56 (1.160)					coding (218/897 nt)	xerD	tyrosine recombinase XerD

TGGAAAAAGGCCTGTCCGACAACACCCGCGTGTCCTATCGCAGCGACCTGGCCCTGTTCAATGGCTGGTTGCAGGAGCATTCGGTATCGCTGCCGGACGCCGGTCGCGACCTGATCCTCGATCACTTGGCCTGGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1673009‑1673146 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccGTGGAACGTGGCTTGTAGCCCTGATCCAGGCGCCAGGCCAAGTGATCGAGGATCAGGTCGCGACCGGCGTCCGGCAGCGATACCGAATGCTCCTGCAACCAGCCATTGAACAGGGCCAGGTCGCTGCGATAGGACACGCGGGTGTTGT  <  NC_002947/1673174‑1673027                                                                                                                                                                                                                                                                                                TGGAAAAAGGCCTGTCCGACAACACCCGCGTGTCCTATCGCAGCGACCTGGCCCTGTTCAATGGCTGGTTGCAGGAGCATTCGGTATCGCTGCCGGACGCCGGTCGCGACCTGATCCTCGATCACTTGGCCTGGCGCCGTGGAACGTGG                                                                                                                                           >  6:109430/1‑149                          CCGCGTGTCCTATCGCAGCGACCTGGCCCTGTTCAATGGCTGGTTGCAGGAGCATTCGGTATCGCTGCCGGACGCCGGTCGCGACCTGATCCTCGATCACTTGGCCTGGCGCCGTGGAACGTGGCTTGTAGCCCTGATCCAGGCGCCAG                                                                                                                  <  5:109430/149‑1                                      TCGCAGCGACCTGGCCCTGTTCAATGGCTGGTTGCAGGAGCATTCGGTATCGCTGCCGGACGCCGGTCGCGACCTGATCCTCGATCACTTGGCCTGGCGCCGTGGAACGTGGCTTGTAGCCCTGATCCAGGC                                                                                                                       <  1:274839/132‑1                                      TCGCAGCGACCTGGCCCTGTTCAATGGCTGGTTGCAGGAGCATTCGGTATCGCTGCCGGACGCCGGTCGCGACCTGATCCTCGATCACTTGGCCTGGCGCCGTGGAACGTGGCTTGTAGCCCTGATCCAGGC                                                                                                                       >  2:274839/1‑132                                                                                                                                      GCGCCGTGGAACGTGGCTTGTAGCCCTGATCCAGGCGCCAGGCCAAGTGATCGAGGATCAGGTCGCGACCGGCGTCCGGCAGCGATACCGAATGCTCCTGCAACCAGCCATTGAACAGGGCCAGGTCGCTGCGATAGGACACGCGGGTG      <  3:219519/149‑1                                                                                                                                        GCCGTGGAACGTGGCTTGTAGCCCTGATCCAGGCGCCAGGCCAAGTGATCGAGGATCAGGTCGCGACCGGCGTCCGGCAGCGATACCGAATGCTCCTGCAACCAGCCATTGAACAGGGCCAGGTCGCTGCGATAGGACACGCGGGTGTT    >  4:75012/1‑149                                                                                                                                         CCGTGGAACGTGGCTTGTAGCCCTGATCCAGGCGCCAGGCCAAGTGATCGAGGATCAGGTCGCGACCGGCGTCCGGCAGCGATACCGAATGCTCCTGCAACCAGCCATTGAACAGGGCCAGGTCGCTGCGATAGGACACGCGGGTGTTG   <  4:55149/149‑1                                                                                                                                          CGTGGAACGTGGCTTGTAGCCCTGATCCAGGCGCCAGGCCAAGTGATCGAGGATCAGGTCGCGACCGGCGTCCGGCAGAGATACCGAATGCTCCTGCAACCAGCCATTGAACAGGGCCAGGTCGCTGCGATAGGACACGCGTGTGTTGT  <  5:229521/149‑1                                                                                                                                                                                                                                                                                                TGGAAAAAGGCCTGTCCGACAACACCCGCGTGTCCTATCGCAGCGACCTGGCCCTGTTCAATGGCTGGTTGCAGGAGCATTCGGTATCGCTGCCGGACGCCGGTCGCGACCTGATCCTCGATCACTTGGCCTGGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1673009‑1673146 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccGTGGAACGTGGCTTGTAGCCCTGATCCAGGCGCCAGGCCAAGTGATCGAGGATCAGGTCGCGACCGGCGTCCGGCAGCGATACCGAATGCTCCTGCAACCAGCCATTGAACAGGGCCAGGTCGCTGCGATAGGACACGCGGGTGTTGT  <  NC_002947/1673174‑1673027

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.