| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1821299 | NA (NA) | 3 (0.060) | 3/244 | NT | NA | coding (1062/1422 nt) | PP_1624 | group II intron‑encoding maturase |
| ? | NC_002947 | = 2070624 | NA (NA) | coding (998/1422 nt) | PP_1846 | group II intron‑encoding maturase | |||||
CTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1821147‑1821299‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcagcCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGCTTCAGACGTTCTCTCAGGAAGCGCTCGACGCTGACCAACACCCGTTCGCCGGCCCGG < NC_002947/2070624‑2070478 cgGACGGTGAACAGGAAGAAAAGCGAAGTGGCAAGGGCGTGGAAGTGCGACTTCCTAGGCTTTGGGATGCGCTGGCACCAGCAGCCAAGACTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGC < 8:131737/146‑1 TGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCG > 6:30855/1‑148 CAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGC < 5:218982/137‑1 CAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGC > 6:218982/1‑137 GTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCA > 8:210925/1‑124 GTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCA < 7:210925/124‑1 GCCAAGACTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCAGTCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGT > 8:192871/1‑149 CAAGACTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCAGTCTTGGCTGCTGGTGCCAGCTGATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCAGTTGGCTTTTCTTCCTGTT > 8:226424/1‑148 CTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCAGCCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCCCTTGGCTTTTCTTCCTGTTCACCGT > 7:234881/1‑149 GCGCAGCCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGCTTCAGACGTTCTCTCAGG > 2:33482/1‑115 GCGCAGCCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCCGTTCACCGTCAGCTTCAGACGTTCTCTCAGG < 1:33482/115‑1 GCGCAGCCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTC < 7:257086/79‑1 GCGCAGCCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTC > 8:257086/1‑79 CGCAGCCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGCTTCAGACGTTCTCTCAGGAAGCGCTCGACGCTGACCAACACCCGTTCGCCGGC < 6:167513/149‑1 CGCAGCCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGCTTCAGACGTTCTCTCAGGAAGCGCTCGACGCTGACCAACACCCGTTCGCCGGC < 1:109390/149‑1 GCCTTGGCTGCTGGTGCCAGCTCATCCCATCGCCTAGGTAGTCGCACTTCCACGCCCTTGCCAGTTGGCTTTTCTTCCTGTTCACCGTCAGCTTCAGACGTTCTCTCAGGCAGCGCTCGACGCTGACCAACACCCGTTCGCCGGCCCGG < 1:77420/149‑1 GCCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGCTTCAGACGTTCTCTCAGGAAGCGCTCGACGCTGACCAACACCCGTTCGCCGGCCCGG < 5:183463/149‑1 GCCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGCTTCAGACGTTCTCTCAGGAAGCGCTCGACGCTGACCAACACCCGTTCGCCGGCCCGG < 3:299657/149‑1 CCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGCTTCAGACGTTCTCTCAGGAAGCGCTCGACGCTGACCAACACCCGTTCGCCGGCCCGG < 7:6706/148‑1 CCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGCTTCAGACGTTCTCTCAGGAAGCGCTCGACGCTGACCAACACCCGTTCGCCGGCCCGG > 8:6706/1‑148 CCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCACTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGCTTCAGACGTTCTCTCAGGAAGCGCTCGACGCTGACCAACACCCGTTCGCCGGCCCGG < 2:189377/148‑1 CTGACGGTGAACAGGAAGAAAAGCCAAGTGGCAAGGGCGTGGAAGTGCGACTACCTAGGCTATGGGATGAGCTGGCACCAGCAGCCAAGACTGCGCGTGGCAAGGATGAGCCTAGACCGCTTACGCGACCGGCTCAGAATGCTGCTGCGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1821147‑1821299‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcagcCTTGGCTGCTGGTGCCAGCTCATCCCATAGCCTAGGTAGTCGCACTTCCACGCCCTTGCCACTTGGCTTTTCTTCCTGTTCACCGTCAGCTTCAGACGTTCTCTCAGGAAGCGCTCGACGCTGACCAACACCCGTTCGCCGGCCCGG < NC_002947/2070624‑2070478 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |