| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3104284 | 55 (1.090) | 3 (0.060) | 3/248 | NT | 5.7% | coding (812/1365 nt) | PP_2714 | sensor histidine kinase |
| ? | NC_002947 | = 3104323 | 46 (0.950) | coding (851/1365 nt) | PP_2714 | sensor histidine kinase | |||||
AGGCGGCCATCAATCGCTTGCTGGCGCAGATCGACGATCTGCTGCGGCGTGAACATCGCTTCATTGCCGATGCTGCCCACGAAATGCGTACGCCTCTGGCCGTATTGCGCCTGCACGCGCAGAACGCGCTGGCCGCCAGCAATGATGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3104134‑3104284‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgaTCGACCCCGCCCACAAGAAAGCCCAGGGCTTTCTGGCGCTCGGCATCATTGCTGGCGGCCAGCGCGTTCTGCGCGTGCAGGCGCAATACGGCCAGAGGCGTACGCATTTCGTGGGCAGCATCGGCAATGAAGCGATGTTCACGCCG < NC_002947/3104323‑3104178 AGGCGGCCATCAATCGCTTGCTGGCGCAGATCGACGATCTGCTGCGGCGTGAACATCGCTTCATTGCCGATGCTGCCCACGAAATGCGTACGCCTCTGGCCGTATTGCGCCTGCACGCGCAGAACGCGCTGGCCGCCAGCAATGATGCC < 8:19737/149‑1AGGCGGCCATCAATCGCTTGCTGGCGCAGATCGACGATCTGCTGCGGCGTGAACATCGCTTCATTGCCGATGCTGCCCACGAAATGCGTACGCCTCTGGCCGTATTGCGCCTGCACGCGCAGAACGCGCTGGCCGCCAGCAATGATGCC < 8:24523/149‑1 GGCCATCAATCGCTTGCTGGCGCAGATCGACGATCTGCTGCGGCGTGAACATCGCTTCATTGCCGATGCTGCCCACGAAATGCGTACGCCTCTGGCCGTATTGCGCCTGCACGCGCAGAACGCGCTGGCCGCCAGCAATGATGCC > 1:42547/1‑145 GGCCATCAATCGCTTGCTGGCGCAGATCGACGATCTGCTGCGGCGTGAACATCGCTTCATTGCCGATGCTGCCCACGAAATGCGTACGCCTCTGGCCGTATTGCGCCTGCACGCGCAGAACGCGCTGGCCGCCAGCAATGATGCC < 2:42547/145‑1 ACATCGCTTCATTGCCGATGCTGCCCACGAAATGCGTACGCCTCTGGCCGTATTGCGCCTGCACGCGCAGAACGCGCTGGCCGCCAGCAATGATGCCGATCGACCCCGCCCACAAGAAAGCCCAGGGCTTTCTGGCGCTCGGCATCATT < 6:88524/149‑1 CACGAAATGCGTACGCCTCTGGCCGTATTGCGCCTGCACGCGCAGAACGCGCTGGCCGCCAGCAATGATGCCGATCGACCCCGCCCACAAGAAAGCCCAGGGCTTTCTGGCGCTCGGCATCA > 1:321021/1‑122 CACGAAATGCGTACGCCTCTGGCCGTATTGCGCCTGCACGCGCAGAACGCGCTGGCCGCCAGCAATGATGCCGATCGACCCCGCCCACAAGAAAGCCCAGGGCTTTCTGGCGCTCGGCATCA < 2:321021/122‑1 CCGATCGACCCCGCCCACAAGAAAGCCCAGGGCTTTCTGGCGCTCGGCATCATTGCTGGCGGCCAGCGCGTTCTGCGCGTGCAGGCGCAATACGGCCAGAGGCGTACGCATTTCGTGGGCAGCATCGGCAATGAAGCGATGTTCACGCC > 7:257905/1‑149 CGATCGACCCCGCCCACAAGAAAGCCCAGGGCTTTCTGGCGCTCGGCATCATTGCTGGCGGCCAGCGCGTTCTGCGCGTGCAGGCGCAATACGGCCAGAGGCGTACGCATTTCGTGGGCAGCATCGGCAATGAAGCGATGTTCACGCCG > 5:149836/1‑149 AGGCGGCCATCAATCGCTTGCTGGCGCAGATCGACGATCTGCTGCGGCGTGAACATCGCTTCATTGCCGATGCTGCCCACGAAATGCGTACGCCTCTGGCCGTATTGCGCCTGCACGCGCAGAACGCGCTGGCCGCCAGCAATGATGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3104134‑3104284‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgaTCGACCCCGCCCACAAGAAAGCCCAGGGCTTTCTGGCGCTCGGCATCATTGCTGGCGGCCAGCGCGTTCTGCGCGTGCAGGCGCAATACGGCCAGAGGCGTACGCATTTCGTGGGCAGCATCGGCAATGAAGCGATGTTCACGCCG < NC_002947/3104323‑3104178 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |