New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3490374 =	64 (1.270)	4 (0.080)	4/244	NT	6.5%	coding (1017/2637 nt)	clpV	protein ClpV1
	?	NC_002947	3490425 =	55 (1.150)					coding (966/2637 nt)	clpV	protein ClpV1

TTCGAGAACCGCCTCAAGGCTGTGATCGAAGAGGTCAAGCGCAGCCTGCACCCGATCATCCTGTTCATCGACGAAGCCCACACCCTGATCGGCTCCGGCGGCCAGGCCGGGCAGAACGATGCCGCCAACCTGCTCAAGCCGGCCCTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3490523‑3490374 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctggccGCCGGAGCCGATCAGGGTGTGGGCTTCGTCGATGAACAGGATGATCGGGTGCAGGCTGCGCTTGACCTCTTCGATCACAGCCTTGAGGCGGTTCTCGAACTCGCCCTTGACCCCGGCGCCGGCCTGTAACAGGCCCAGGTCGAGG  >  NC_002947/3490425‑3490569                                                                                                                                                                                                                                                                                                         TTCGAGCACCGCCTCACGGCTGGGATCGAAGAGGTCAAGCGCAGCCTGCACCCGATCCTCGTGGTCATCGACGAAGCCCACACCCTGAGCGGCTCCGGCGGCCAGGCCGGGCAGAACGATGCCGCCAACCTGCTCAAGCCGGCCCTGGC                                                                                                                                                    <  3:38783/149‑1                                                                                           GGCTCCGGCGGCCAGGCCGGGCAGAACGATGCCGCCAACCTGCTCAAGCCGGCC                                                                                                                                                         <  2:28073/54‑1                                                                                           GGCTCCGGCGGCCAGGCCGGGCAGAACGATCCCGCCAACCTGCTCAAGCCGGCC                                                                                                                                                         >  1:28073/1‑54                                                                                                    GGCCAGGCCGGGCAGAACGATGCCGCCAACCTGCTCAAGCCGGCCCTGGCCGCCGGAGCCGATCAGGGTGTGGGCTTCGTCGATGAACAGGATGATCGGGTGCAGGCTGCGCTTGACCTCTTCGATCACAGCCTTGAGGCGGTTCTCG                                                  >  6:181712/1‑148                                                                                                     GCCAGGCCGGGCAGAACGATGCCGCCAACCTGCTCAAGCCGGCCCTGGCCGCCGGAGCCGATCAGGGTGTGGGCTTCGTCGATGAACAGGATGATCGGGTGCAGGCTGCGCTTGACCTCTTCGATCACAGCCTTGAG                                                            >  5:8138/1‑137                                                                                                     GCCAGGCCGGGCAGAACGATGCCGCCAACCTGCTCAAGCCGGCCCTGGCCGCCGGAGCCGATCAGGGTGTGGGCTTCGTCGATGAACAGGATGATCGGGTGCAGGCTGCGCTTGACCTCTTCGATCACAGCCTTGAG                                                            <  6:8138/137‑1                                                                                                                                     CTCAAGCCGGCCCTGGCCGCCGGAGCCGATCAGGGTGTGGGCTTCGTCGATGAACAGGATGATCGGGTGCAGGCTGCGCTTGACCTCTTCGATCACAGCCTTGAGGCGGTTCTCGAACTCGCCCTTGACCCCGGCGCCGGCCTGTAAC                 <  5:181712/148‑1                                                                                                                                                 CTGGCCGCCGGAGCCGATCAGGGTGTGGGCTTCGTCGATGAACAGGATGATCGGGTGCAGGCTGCGCTTGACCTCTTCGATCACAGCCTTGAGG                                                           <  5:329377/94‑1                                                                                                                                                 CTGGCCGCCGGAGCCGATCAGGGTGTGGGCTTCGTCGATGAACAGGATGATCGGGTGCAGGCTGCGCTTGACCTCTTCGATCACAGCCTTGAGG                                                           >  6:329377/1‑94                                                                                                                                                    GCCGCCGGAGCCGATCAGGGTGTGGGCTTCGTCGATGAACAGGATGATCGGGTGCAGGCTGCGCTTGACCTCTTCGATCACAGCCTTGAGGCGGTTCTCGAACTCGCCCTTGACCCCGGCGCCGGCCTGTAACAGGCCCAGGTCGAGG  <  4:240908/148‑1                                                                                                                                                                                                                                                                                                         TTCGAGAACCGCCTCAAGGCTGTGATCGAAGAGGTCAAGCGCAGCCTGCACCCGATCATCCTGTTCATCGACGAAGCCCACACCCTGATCGGCTCCGGCGGCCAGGCCGGGCAGAACGATGCCGCCAACCTGCTCAAGCCGGCCCTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3490523‑3490374 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctggccGCCGGAGCCGATCAGGGTGTGGGCTTCGTCGATGAACAGGATGATCGGGTGCAGGCTGCGCTTGACCTCTTCGATCACAGCCTTGAGGCGGTTCTCGAACTCGCCCTTGACCCCGGCGCCGGCCTGTAACAGGCCCAGGTCGAGG  >  NC_002947/3490425‑3490569

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.