New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3705180 =	57 (1.130)	3 (0.060)	3/256	NT	5.1%	coding (822/2055 nt)	paaZ	bifunctional oxepin‑CoA hydrolase/3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase
	?	NC_002947	3705200 =	55 (1.100)					coding (802/2055 nt)	paaZ	bifunctional oxepin‑CoA hydrolase/3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase

CCGCCGACACTGCCGCGAAACTGCGCGTGACGCCCAACCTGATTCGCAACTCGGTGCCGTTCACCGCCGAGGCCGACTCGCTCAACTGCGCCATCCTCGGCCCGGACGTGAGTCCGGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3705298‑3705180 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCGAGGATGGCGCAGTTGAGCGAGTCGGC  >  NC_002947/3705200‑3705227                                                                                                                                                     CCGCCGACACTGCCGCGAAACTGCGCGTGACGCCCAACCTGACTCGCAACTCGGTGCCGTTCACCGCCGAGGCCGACTCGCTCAACTGCACCATCCTCGGTCCGGACTCACGTCCGGGCCGAGGATGGCGCAGTT              <  6:174600/135‑1 CCGCCGACACTGCCGCGAAACTGCGCGTGACGCCCAACCTGAATCGCAACTCGGTGCCGTTCACCGCCGAGGCCGACTCGCTCAACTGCACCATCCTCGGTCCGGACTCACGTCCGGGCCGAGGATGGCGCAGTT              >  5:174600/1‑135                                  CCAACCTGATTCGCAACTCGGTGCCGTTCACCGCCGAGGCCGACTCGCTCAACTGCGCCATCCTCGGTCCGGACTCACGTCCGGGACGAGGATGGCGCAGTTGAGCGAGTCGGC  >  7:216829/1‑114                                                                                                                                                     CCGCCGACACTGCCGCGAAACTGCGCGTGACGCCCAACCTGATTCGCAACTCGGTGCCGTTCACCGCCGAGGCCGACTCGCTCAACTGCGCCATCCTCGGCCCGGACGTGAGTCCGGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3705298‑3705180 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCGAGGATGGCGCAGTTGAGCGAGTCGGC  >  NC_002947/3705200‑3705227

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.