New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3725039 =	52 (1.030)	4 (0.080)	4/244	NT	7.5%	coding (609/927 nt)	PP_3290	universal stress protein family protein
	?	NC_002947	3725091 =	50 (1.050)					coding (661/927 nt)	PP_3290	universal stress protein family protein

CCTGTTCCCGGATCACCTGTACCGGGCCTCCTTCCATGAAATGTCGGCGGTCCGGCGCGACGCCTTCGGCATCGGCCAGCGCTTCGAATGGCTCCTGCAGTGCCTCGCGCATCTCGTCGATCCAGGCCTGGGAGACATTCATGTCCGAGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3725190‑3725039 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaggcaCTGCAGGAGCCATTCGAAGCGCTGGCCGATGCCGAAGGCGTCGCGCCGGACCGCCGACATTTCATGGAAGGAGGCCCGGTACAGGTGATCCGGGAACAGGTCGCGTCCCTGGACATCGACGCGGTGGTGATGGGCGTGGTGCAGC  >  NC_002947/3725091‑3725235                                                                                                                                                                                                                                                                                                           CCTGTTCCCGGATCACCTGTACCGGGCCTCCTTCCATGAAATGTCGGCGGTCCGGCGCGACGCCTTCGGCATCGGCCAGCGCTTCGAATGGCTCCTGCAGTGCCTCGCGCATCTCGTCGATCCAGGCCTGGGAGACATTCATGTCCGAG                                                                                                                                                      >  7:13576/1‑149                 CTGTACCGGGCCTCCTTCCATGAAATGTCGGCGGTCCGGCGCGACGCCTTCGGCATCGGCCAGCGCTTCGAATGGCTCCTGCAGTGCCTCGCGCATCTCGTCGATCCAGGCCTGGGAGACATTCATGTCCGA                                                                                                                                                       >  7:51909/1‑132                 CTGTACCGGGCCTCCTTCCATGAAATGTCGGCGGTCCGGCGCGACGCCTTCGGCATCGGCCAGCGCTTCGAATGGCTCCTGCAGTGCCTCGCGCATCTCGTCGATCCAGGCCTGGGAGACATTCATGTCCGA                                                                                                                                                       <  8:51909/132‑1                                                                                                  CAGTGCCTCGCGCATCTCGTCGATCCAGGCCTGGGAGACATTCATGTCCGAGGCACTGCAGGAGCCATTCGAAGCGCTGGCCGATGCCGAAGGCGTCGCGCCGGACCGCCGACATTTCATGGAAGGA                                                                           <  7:169914/127‑1                                                                                                  CAGTGCCTCGCGCATCTCGTCGATCCAGGCCTGGGAGACATTCATGTCCGAGGCACTGCAGGAGCCATTCGAAGCGCTGGCCGATGCCGAAGGCGTCGCGCCGGACCGCCGACATTTCATGGAAGGA                                                                           >  8:169914/1‑127                                                                                                     TGCCTCGCGCATCTCGTCGATCCAGGCCTGGGAGACATTCATGTCCGAGGCACTGCAGGAGCCATTCGAAGCGCTGGCCGATGCCGAA                                                                                                               >  5:162320/1‑88                                                                                                     TGCCTCGCGCATCTCGTCGATCCAGGCCTGGGAGACATTCATGTCCGAGGCACTGCAGGAGCCATTCGAAGCGCTGGCCGATGCCGAA                                                                                                               <  6:162320/88‑1                                                                                                                                                     GGCACTGCAGGAGCCATTCGAAGCGCTGGCCGATGCCGAAGGCGTCGCGCCGGACCGCCGACATTTCATGGAAGGAGGCCCGGTACAGGTGATCCGGGAACAGGTCGCGTCCCTGGACATCGACGCGGTGGTGATGGGCGTGGTGCAGC  <  2:239178/149‑1                                                                                                                                                     GGCACTGCAGGAGCCATTCGAAGCGCTGGCCGATGCCGAAGGCGTCGCGCCGGACCGCCGACATTTCATGGAAGGAGGCCCGGTACAGGTGATCCGGGAACAGGTCGCGTCCCTGGACATCGACGCGGTGGTGA                 <  1:105520/134‑1                                                                                                                                                     GGCACTGCAGGAGCCATTCGAAGCGCTGGCCGATGCCGAAGGCGTCGCGCCGGACCGCCGACATTTCATGGAAGGAGGCCCGGTACAGGTGATCCGGGAACAGGTCGCGTCCCTGGACATCGACGCGGTGGTGA                 >  2:105520/1‑134                                                                                                                                                                                                                                                                                                           CCTGTTCCCGGATCACCTGTACCGGGCCTCCTTCCATGAAATGTCGGCGGTCCGGCGCGACGCCTTCGGCATCGGCCAGCGCTTCGAATGGCTCCTGCAGTGCCTCGCGCATCTCGTCGATCCAGGCCTGGGAGACATTCATGTCCGAGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3725190‑3725039 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaggcaCTGCAGGAGCCATTCGAAGCGCTGGCCGATGCCGAAGGCGTCGCGCCGGACCGCCGACATTTCATGGAAGGAGGCCCGGTACAGGTGATCCGGGAACAGGTCGCGTCCCTGGACATCGACGCGGTGGTGATGGGCGTGGTGCAGC  >  NC_002947/3725091‑3725235

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.