New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4135844 =	46 (0.910)	4 (0.090)	4/240	NT	9.1%	coding (53/921 nt)	PP_3640	AraC family transcriptional regulator
	?	NC_002947	4135888 =	37 (0.790)					coding (97/921 nt)	PP_3640	AraC family transcriptional regulator

CATCACCTTTCTCCAGGCAAATGGCCTGCGGCTGGCCGTCAATGTGCAGCCAGCAATGGCCTTGCACCACCAGATGAAAGCTGGCCCGGCCCATGCCTTGGGTACTGGCATGCCAGCCGCCGCAATAGCGGCCTACATGAAACAGGCTGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4135996‑4135844 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctggcatGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACA‑TTGACGGCCAGCCGCAGGCCATTTGCCTGGAGAAAGGTGATGCCGTGTTCCTGCTGCGTGACCTGGCCTATCGCTTG  >  NC_002947/4135888‑4136031                                                                                                                                                                                                                                                                                                            CATCACCTTTCTCCAGGCAAATGGCCTGCGGCTGGCCGTCAATGTGCAGCCAGCAATGGCCTTGCACCACCAGATGAAAGCTGGCCCGGCCCATGCCTTGGGTACTGGCATGCCAGCCGCCGCAATAGCGGCCTACATGAAACAGGCTG                                                                                                                                                       <  8:97742/149‑1   TCACCTTTCTCCAGGCAAATGGCCTGCGGCTGGCCGTCAATGTGCAGCCAGCAATGGCCTTGCACCACCAGATGAAAGCTGGCCCGGCCCATGCCTTGGGTACTGGCATGCCAGCCGCCGCAATAGCGGCCTACATGAAACAGGCTGGC                                                                                                                                                     <  4:54904/149‑1     ACCTTTCTCCAGGCAAATGGCCTGCGGCTGGCCGTCAATGTGCAGCCAGCAATGGCCTTGCACCACCAGATGAAAGCTGGCCCGGCCCATGCCTTGGGTACTGGCATGCCAGCCGCCGCAATAGCGGCCTACATGAAACAGGCTGGCAT                                                                                                                                                   <  2:146240/149‑1                                                                  ACCACCAGATGAAAGCTGGCCCGGCCCATGCCTTGGGTACTGGCATGCCAGCCGCCGCAATAGCGGCCTACATGAAACAGGCTG                                                                                                                                                       >  1:281071/1‑84                                                                  ACCACCAGATGAAAGCTGGCCCGGCCCATGCCTTGGGTACTGGCATGCCAGCCGCCGCAATAGCGGCCTACATGAAACAGGCTG                                                                                                                                                       <  2:281071/84‑1                                                                                                               TGCCAGCCGCCGCAATAGCGGCCTACATGAAACAGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACA‑TTGACGGCCAGCCGCAGGCCATTTGCCTGGAGAAAGGTG                                        >  3:33260/1‑149                                                                                                                GCCAGCCGCCGCAATAGCGGCCTACATGAAACAGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACA‑TTGAC                                                                          >  3:266875/1‑114                                                                                                                GCCAGCCGCCGCAATAGCGGCCTACATGAAACAGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACA‑TTGAC                                                                          <  4:266875/114‑1                                                                                                                            AATAGCGGCCTACATGAAACAGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACA‑TTGACGGCCAGCCGCAGGCCATTTGCCTGGAGAAAGGTGATGCCGTGTTCCT                           <  4:33260/149‑1                                                                                                                                                     GGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCATGGCCATTGCTGGCTGCACA‑TTGACGGCCAGCCGCAGGCCATTTGCCTGGAGAAAGGTGATGCCGTGTTCCTGCTGCGTGACCTGGCCTATCGCTTG  <  2:232901/149‑1                                                                                                                                                      GCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACA‑TTGACGGCCAGCCGCAGGCCATTTGCCTGGAGAAAGGTGATGCCGTGTTCCTGCTGCGTGACCTGGCCTATCGCTT   <  1:146240/147‑1                                                                                                                                                       CATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACA‑TTGACGGCCAGCCGCAGGCCATTTGCCTGGAGAAAG                                           <  7:264096/106‑1                                                                                                                                                       CATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACA‑TTGACGGCCAGCCGCAGGCCATTTGCCTGGAGAAAG                                           >  8:264096/1‑106                                                                                                                                                         TGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACACTTGACGGCCAGCCGCAGGCCATTTGCCTGG                                                 <  1:192369/99‑1                                                                                                                                                         TGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACA‑TTGACGGCCAGCCGCAGGCCATTTGCCTGG                                                 >  2:192369/1‑98                                                                                                                                                                                                                                                                                                            CATCACCTTTCTCCAGGCAAATGGCCTGCGGCTGGCCGTCAATGTGCAGCCAGCAATGGCCTTGCACCACCAGATGAAAGCTGGCCCGGCCCATGCCTTGGGTACTGGCATGCCAGCCGCCGCAATAGCGGCCTACATGAAACAGGCTGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4135996‑4135844 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctggcatGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACA‑TTGACGGCCAGCCGCAGGCCATTTGCCTGGAGAAAGGTGATGCCGTGTTCCTGCTGCGTGACCTGGCCTATCGCTTG  >  NC_002947/4135888‑4136031

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.