New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4464513 =	62 (1.230)	4 (0.090)	4/240	NT	6.5%	coding (1442/1974 nt)	betT‑III	choline/carnitine/betaine transporter BetTC
	?	NC_002947	4464569 =	58 (1.240)					coding (1386/1974 nt)	betT‑III	choline/carnitine/betaine transporter BetTC

GTGGATATGCTCGCCTCCTCCGGACAAGGTCACTCACCCCTGTGGCAACGGATCTTCTGGTCAGTCTGCATAGGCGCAGTCGCGATCGCGTTGCTGCTGGCGAACGGCCTCAAGGCGCTGCAGACCGCGACCATTGCGAGCGCTTTGCCGTTCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4464667‑4464513 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgttcgcCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCCGTTGCCACAGGGGTGAGTGACCTTGTCCGGAGGAGGCGAGCATATCCACGACCAGCGCACCAGAGTCCGCCGAG  >  NC_002947/4464569‑4464692                                                                                                                                                                                                                                                                                         GTGGATATGCTCGCCTCCTCCGGACAAGGTCACTCACCCCTGTGGCAACGGATCTTCTGGTCAGTCTGCATAGGCGCAGTCGCGATCGCGTTGCTGCTGGCGAACGGCCTCAAGGCGCTGCAGACCGCGACCATTGCGAGCGCTTTGCC                                                                                                                                    >  4:117199/1‑149       ATGCTCGCCTCCTCCGGACAAGGTCACTCACCCCTGTGGCAACGGATCTTCTGGTCAGTCTGCATAGGCGCAGTCGCGATCGCGTTGCTGCTGGCGAACGGCCTCAAGGCGCTGCAGACCGCGACCATTGCGAGCGCTTTGCCGTTCGC                                                                                                                              >  1:193673/1‑149                             GTCACTCACCCCTGTGGCAACGGATCTTCTGGTCAGTCTGCATAGGCGCAGTCGCGATCGCGTTGCTGCTGGCGAACGGCCTCAAGGCGCTGCAGACCGCGACCATTGCGAGCGCTTTGCCGTTCG                                                                                                                               >  1:116372/1‑126                             GTCACTCACCCCTGTGGCAACGGATCTTCTGGTCAGTCTGCATAGGCGCAGTCGCGATCGCGTTGCTGCTGGCGAACGGCCTCAAGGCGCTGCAGACCGCGACCATTGCGAGCGCTTTGCCGTTCG                                                                                                                               <  2:116372/126‑1                                                                                                   GGCGAACGGCCTCAAGGCGCTGCAGACCGCGACCATTGCGAGCGCTTTGCCGTTCGCCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCCGTTGCCACAGGGGTGAG                                                           <  7:13625/124‑1                                                                                                   GGCGAACGGCCTCAAGGCGCTGCAGACCGCGACCATTGCGAGCGCTTTGCCGTTCGCCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCCGTTGCCACAGGGGTGAG                                                           >  8:13625/1‑124                                                                                                           GCCTCAAGGCGCTGCAGACCGCGACCATTGCGAGCGCTTTGCCGTTCGCCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCCGTTGCCACAGGGGTGAGTGACCTTGTCCGGAGGAGGCGAGCATATCCAC                           >  6:204186/1‑148                                                                                                                                   CCATTGCGAGCGCTTTGCCGTTCGCCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCCGTTGCCACAGGGGTGAGTGACCTTGTCCGGAGGAGGCGAGCATATCCACGACCAGCGCACCAGAGTCCGCCGAG  <  5:204186/149‑1                                                                                                                                                                                                                                                                                         GTGGATATGCTCGCCTCCTCCGGACAAGGTCACTCACCCCTGTGGCAACGGATCTTCTGGTCAGTCTGCATAGGCGCAGTCGCGATCGCGTTGCTGCTGGCGAACGGCCTCAAGGCGCTGCAGACCGCGACCATTGCGAGCGCTTTGCCGTTCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4464667‑4464513 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgttcgcCAGCAGCAACGCGATCGCGACTGCGCCTATGCAGACTGACCAGAAGATCCGTTGCCACAGGGGTGAGTGACCTTGTCCGGAGGAGGCGAGCATATCCACGACCAGCGCACCAGAGTCCGCCGAG  >  NC_002947/4464569‑4464692

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.