New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4525157	45 (0.890)	5 (0.110)	4/240	NT	10.4%	coding (88/1125 nt)	mnmA	tRNA 2‑thiouridine(34) synthase MnmA
	?	NC_002947	= 4525183	44 (0.940)					coding (114/1125 nt)	mnmA	tRNA 2‑thiouridine(34) synthase MnmA

GCGACTGACGCGGCGCCGCGGGTTTGATAGAATCGGCGTTTTTCCCCCTTGATACACACCGGTACCCATGACCAGCCCAGCACTTAAAGACCCCGCCAAGACCCGCGTCATCGTCGGCATGTCCGGCGGCGTGGACTCTTCCGTCTCAGCCCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4525003‑4525157 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcccttcCACCTGGTAGCCCTGCTCGATGAGCAGAAGGGCT‑GAGACGGAAGAGTCCACGCCGCCGGACATGCCGACGATGACGCGGGTCTTGGCGGGGTCTTTAAGTGCTGGGCTGGTCATGGGTACCGGTGTGTATCAAGGGGGAAAAACGC  <  NC_002947/4525183‑4525038                                                                                                                                                                                                                                                                                                                GCGACTGACGCGGCGCCGCGGGTTTGATAGAATCGGCGTTTTTCCCCCTTGATACACACCGGTACCCATGACCAGCCCAGCACTTAAAGACCCCGCCAAGACCCGCGTCATCGTCGGCATGTCCGGCGGCGTGGACTCTTCCGTCTCAG                                                                                                                                                           <  6:42935/149‑1        ACGCGGCGCCGCGGGTTTGATAGAATCGGCGTTTTTCCCCCTTGATACACACCGGTACCCATGACCAGCCCAGCACTTAAAGACCCCGCCAAGACCCGCGTCATCGTCGGCATGTCCGGCGGCGTGGACTCTTCCGTCTCAGCCCTT                                                                                                                                                      <  5:239117/147‑1                                         TTTCCCCCTTGATACACACCGGTACCCATGACCAGCCCAGCACTTAAAGACCCCGCCAAGACCCGCGTCATCGTCGGCATGTCCGGCGGCGTGGACTCTTCCGTCTCAGCCCTTCCACCTGGTAGCCCTGCTCGATGAGCAGAAGGG                                                                                                                     >  7:133139/1‑147                                         TTTCCCCCTTGATACACACCGGTACCCATGACCAGCCCAGCACTTAAAGACCCCGCCAAGACCCGCGTCATCGTCGGCATGTCCGGCGGCGTGGACTCTTCCGTCTCAGCCCTTCCACCTGGTAGCCCTGCTCGATGAGCAGAAGGG                                                                                                                     <  8:133139/147‑1                                            CCCCCTTGATACACACCGGTACCCATGACCAGCCCAGCACTTAAAGACCCCGCCAAGACCCGCGTCATCGTCGGCATGTCCGGCGGCGTGGACTCTTCCGTCTCAGCCCTTCCACCTGGTAGCCCTGCTTGATGAGCAGAAGGGCT‑GA                                                                                                                <  8:60203/148‑1                                                                                    TTAAAGACCCCGCCAAGACCCGCGTCATCGTCGGCATGTCCGGCGGCGTGGACTCTTCCGTCTCAGCCCTTCCACCTGGTAGCCCTGCTCGATGAGCAGAAGGGCT‑GA                                                                                                                >  5:87820/1‑108                                                                                    TTAAAGACCCCGCCAAGACCCGCGTCATCGTCGGCATGTCCGGCGGCGTGGACTCTTCCGTCTCAGCCCTTCCACCTGGTAGCCCTGCTCGATGAGCAGAAGGGCT‑GA                                                                                                                <  6:87820/108‑1                                                                                                                                                       CCTTCCACCTGGTAGCCCTGCTCGATGAGCAGAAGGGCT‑GAGACGGAAGAGTCCACGCCGCCGGACATGCCGACGATGACGCGGGTCTTGGCGGGGTCTTTAAGTGCTGGGCTGGTCATGGGTACCGGTGTGTATCAAGGGGGAAAAAC    <  8:279915/149‑1                                                                                                                                                          TCCACCTGGTAGCCCTGCTCGATGAGCAGAAGGGCTGGAGACGGAAGAGTCCACGCCGCCGGACATGCCGACGATGACGCGGGTCTTGGCGGGGTCTTTAAGTGCTGGGCTGGTCATGGGTACCGGTGTGTATCAAGGGGGAAAAACGC  >  1:53019/1‑149                                                                                                                                                                                                                                                                                                                GCGACTGACGCGGCGCCGCGGGTTTGATAGAATCGGCGTTTTTCCCCCTTGATACACACCGGTACCCATGACCAGCCCAGCACTTAAAGACCCCGCCAAGACCCGCGTCATCGTCGGCATGTCCGGCGGCGTGGACTCTTCCGTCTCAGCCCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4525003‑4525157 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcccttcCACCTGGTAGCCCTGCTCGATGAGCAGAAGGGCT‑GAGACGGAAGAGTCCACGCCGCCGGACATGCCGACGATGACGCGGGTCTTGGCGGGGTCTTTAAGTGCTGGGCTGGTCATGGGTACCGGTGTGTATCAAGGGGGAAAAACGC  <  NC_002947/4525183‑4525038

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.