New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4851017 =	45 (0.890)	5 (0.110)	5/242	NT	9.7%	intergenic (+13/‑43)	fnrA/apt	DNA‑binding transcriptional dual regulator/adenine phosphoribosyltransferase
	?	NC_002947	4851056 =	51 (1.080)					intergenic (+52/‑4)	fnrA/apt	DNA‑binding transcriptional dual regulator/adenine phosphoribosyltransferase

CCGCGTGGCGACTGGAATAACGGGGTAATGTCGCGGAAGATCACGCCCGGTTTGGGGAAGTCCACTACCGGGCGGATCAGGGCTTTGAGGTCGAAGGCGTCGCTGTGCATTGTTGCGGGTATCCTGGGAAAACGAATGCCCAAGTATACCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4851169‑4851017 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atacccgcAACAATGCACAGCGACGCCTTCGACCTCAAAGCCCTGATCCGCCCGGTAGTGGACTTCCCCAAACCGGGCGTGATCTTCCGCGACATTACCCCGTTATTCCAGTCGCCACGCGGGCTGCGCTATGTGGCCGACCAGTTCATCGAGC  >  NC_002947/4851056‑4851201                                                                                                                                                                                                                                                                                                             CCGCGTGGCGACTGGAATAACGGGGTAATGTCGCGGAAGATCACGCCCGGTTTGTGGAAGTCCACTACCGGGCGGATCAGGGCTTTGAGGTCGAAGGCGTCGCTGTGCATTGTTGCGGGTATCCTGGGAAAACGAATGCCCAAGTATAC                                                                                                                                                        <  8:111478/149‑1      TGGCGACTGGAATAACGGGGTAATGTCGCGGAAGATCACGCCCGGTTTGGGGAAGTCCACTACCGGGCGGATCAGGGCTTTGAGGTCGAAGGCGTCGCTGTGCATTGTTGCGGGTATCCTGGGAAAACGAATGCCCAAGTATACCCGC                                                                                                                                                    >  1:105447/1‑148                                                                                                              TTGTTGCGGGTATCCTGGGAAAACGAATGCCCAAGTATACCCGCAACAATGCACAGCGACGCCTTCGACCTCAAAGCCCTGATCCGCCCGGTAGTGGACTTCCCCAAACCGGGCGTGA                                                                          >  3:274386/1‑118                                                                                                              TTGTTGCGGGTATCCTGGGAAAACGAATGCCCAAGTATACCCGCAACAATGCACAGCGACGCCTTCGACCTCAAAGCCCTGATCCGCCCGGTAGTGGACTTCCCCAAACCGGGCGTGA                                                                          <  4:274386/118‑1                                                                                                                   GCGGGTATCCTGGGAAAACGAATGCCCAAGTATACCCGCAACAATGCACAGCGACGCCTTCGACCTCAAAGCCCTGATCCGCCCGGTAGTGGACTTCCCCAAACCGGGCGTGATCTTCCGCGACATTACCCCGTTATTCCAGTCGCCAC                                      >  2:185321/1‑149                                                                                                                       GTATCCTGGGAAAACGAATGCCCAAGTATACCCGCAACAATGCACAGCGACGCCTTCGACCTCAAAGCCCTGATCCGCCCGGTAGTGGACTTCCCCAAACCGGGCGTGATCTTCCGCG                                                                 >  3:105004/1‑118                                                                                                                       GTATCCTGGGAAAACGAATGCCCAAGTATACCCGCAACAATGCACAGCGACGCCTTCGACCTCAAAGCCCTGATCCGCCCGGTAGTGGACTTCCCCAAACCGGGCGTGATCTTCCGCG                                                                 <  4:105004/118‑1                                                                                                                                                      CCGCAACAATGCACAGCGACGCCTTCGACCTCAAAGCCCTGATCCGCCCGGTAGTGGACTTCCCCAAACCGGGCGTGATCTTCCGCGACATTACCCCGTTATTCCAGTCGCCACGCGGGCTGCGCTATGTGGCCGACCAGTTCATCGAG   >  6:5344/1‑149                                                                                                                                                       CGCAACAATGCACAGCGACGCCTTCGACCTCAAAGCCCTGATCCGCCCGGTAGTGGACTTCCCCAAACCGTGCGTGATCTTCCGCGACATTACCCCGTTATTCCAGTCGCCACGCGGGCTGCGCTATGTGGCCGACCAGTTCATCGAGC  <  8:105726/149‑1                                                                                                                                                                                                                                                                                                             CCGCGTGGCGACTGGAATAACGGGGTAATGTCGCGGAAGATCACGCCCGGTTTGGGGAAGTCCACTACCGGGCGGATCAGGGCTTTGAGGTCGAAGGCGTCGCTGTGCATTGTTGCGGGTATCCTGGGAAAACGAATGCCCAAGTATACCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4851169‑4851017 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atacccgcAACAATGCACAGCGACGCCTTCGACCTCAAAGCCCTGATCCGCCCGGTAGTGGACTTCCCCAAACCGGGCGTGATCTTCCGCGACATTACCCCGTTATTCCAGTCGCCACGCGGGCTGCGCTATGTGGCCGACCAGTTCATCGAGC  >  NC_002947/4851056‑4851201

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.