| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4899656 = | 52 (1.030) | 4 (0.080) | 3/242 | NT | 7.4% | coding (55/438 nt) | PP_4308 | AsnC family transcriptional regulator |
| ? | NC_002947 | 4899715 = | 52 (1.100) | coding (114/438 nt) | PP_4308 | AsnC family transcriptional regulator | |||||
CCAAAGGCGCGCGGGTCGACCTCCACGGTATAGCCGCGCAGCACGCCACGCTCTTCCAGTCGGCGCAGGCGCTCGCTGACGCTGGGTGCGGACAGCCCGCTGACCTGCGCCAGCGCCTTGAGCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4899783‑4899656‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgagcgCCTGCGCCGACTGGAAGAGCGTGGCGTGCTGCGCGGCTATACCGTGGAGGTCGACCCGCGCGCCTTTGGCTACCAGTTGCAGGCGATCGTGCGCATCCGTCCGCTACCGGGGAAGCTGCAGGAGGTGGAGCGCCAGATCATTGC > NC_002947/4899715‑4899858 CCAAAGGCGCGCGGGTCGACCTCCACGGTATAGCCGCGCAGCACGCCACGCTCTTCCAGTCGGCGCAGGCGCTCGCTGACGCTGGGTGCGGACAGCCCGCTGACCTGCGCCAGCGCCTTGAGC < 2:111415/123‑1 AAAGGCGCGCGGGTCGACCTCCACGGTATAGCCGCGCAGCACGCCACGCTCTTCCAGTCGGCGCAGGCGCTCGCTGACGCTGGGTGCGGACAGCCCGCTGACCTGCGCCAGCGCCTTGA < 7:61662/119‑1 AAAGGCGCGCGGGTCGACCTCCACGGTATAGCCGCGCAGCACGCCACGCTCTTCCAGTCGGCGCAGGCGCTCGCTGACGCTGGGTGCGGACAGCCCGCTGACCTGCGCCAGCGCCTTGA > 8:61662/1‑119 CGCTCGCTGACGCTGGGTGCGGACAGCCCGCTGACCTGCGCCAGCGCCTTGAGCGAGCGCCTGCGCCGACTGGAAGAGCGTGGCGTGCTGCGCGGCTATACAGTGGAGGTCGACCCGCGCGCCTTTGGCTACCAGTTGCAGGCGATCGT > 5:178097/1‑149 GCTCGCTGACGCTGGGTGCGGACAGCCCGCTGACCTGCGCCAGCGCCTTGAGCGAGCGCCTGCGCCGACTGGAAGAGCGTGGCGTGCTGCGCGGCTATACCGTGGAGGTCGACCCGCGCGCCTTTGGCTACCAGTTGCAGGCGATCGTG > 2:222857/1‑149 GCTCGCTGACGCTGGGTGCGGACAGCCCGCTGACCTGCGCCAGCGCCTTGAGCGAGCGCCTGCGCCGACTGGAAGAGCGTGGCGTGCTGCGCGGCTATACCGTGGAGGTCGACCCGCGCGCCTTTGGCTACCAGTT < 3:85503/136‑1 GCTCGCTGACGCTGGGTGCGGACAGCCCGCTGACCTGCGCCAGCGCCTTGAGCGAGCGCCTGCGCCGACTGGAAGAGCGTGGCGTGCTGCGCGGCTATACCGTGGAGGTCGACCCGCGCGCCTTTGGCTACCAGTT > 4:85503/1‑136 GCGAGCGCCTGCGCCGACTGGAAGAGCGTGGCGTGCTGCGCGGCTATACCGTGGAGGTCGACCCGCGCGCCTTTGGCTACCAGTTGCAGGCGATCGTGCGCATCCGTCCGCTACCGGGGAAGCTGCAGGAGGTGGAGCGCCAGATCATT > 4:80617/1‑149 CGAGCGCCTGCGCCGACTGGAAGAGCGTGGCGTGCTGCGCGGCTATACCGTGGAGGTCGACCCGCGCGCCTTTGGCTACCAGTTGCAGGCGATCGTGCGCATCCGTCCGCTACCGGGGAAGCTGCAGGAGGTGGAGCGCCAGATCATTG < 6:178097/149‑1 GAGCGCCTGCGCCGACTGGAAGAGCGTGGCGTGCTGCGCGGCTATACCGTGGAGGTCGACCCGCGCGCCTTTGGCTACCAGTTGCAGGCGATCGTGCGCATCCGTCCGCTACCGGGGAAGCTGCAGGAGGTGGAGCGCCAGATCATTGC < 7:62899/149‑1 CCAAAGGCGCGCGGGTCGACCTCCACGGTATAGCCGCGCAGCACGCCACGCTCTTCCAGTCGGCGCAGGCGCTCGCTGACGCTGGGTGCGGACAGCCCGCTGACCTGCGCCAGCGCCTTGAGCGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4899783‑4899656‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgagcgCCTGCGCCGACTGGAAGAGCGTGGCGTGCTGCGCGGCTATACCGTGGAGGTCGACCCGCGCGCCTTTGGCTACCAGTTGCAGGCGATCGTGCGCATCCGTCCGCTACCGGGGAAGCTGCAGGAGGTGGAGCGCCAGATCATTGC > NC_002947/4899715‑4899858 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |