New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5439266	53 (1.050)	3 (0.060)	3/238	NT	6.3%	coding (90/633 nt)	rluE	23S rRNA pseudouridine(2457) synthase
	?	NC_002947	= 5439309	41 (0.880)					coding (47/633 nt)	rluE	23S rRNA pseudouridine(2457) synthase

GTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATACGCCCGGAATGTCGATGAAGTCCTTGAGCGTCGCGCGCCCTTCACCGTCGCTGAACTGGGTCAGCACGTCGAACGGTTTGTTGAACAGGATCAGGCGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5439110‑5439266 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggcgcggcCTGCCGCCGGCCCGCGTCGCCAGGCCAAGGCGCCACCCGCCGAGCCGCGCCTGATCCTGTTCAACAAACCGTTCGACGTGCTGACCCAGTTCAGCGACGGTGAAGGGCGCGCGACGCTCAAGGACTTCATCGACATTCCGGGCGTATA  <  NC_002947/5439309‑5439162                                                                                                                                                                                                                                                                                                                   GTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATACGCCCGGAATGTCGATGAAGTCCTTGAGCGTCGCGCGCCCTTCACCGTCGCTGAACTGGGTCAGCACGTCGAACGGTTTGTTGAACAGGATC                                                                                                                                                               <  6:200482/148‑1  TTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATACGCCCGGAATGTCGATGAAGTCCTTGAGCGTCGCGCGCCCTTCACCGTCGCTGAACTGGGTCAGCACGTCGAACGGTTTATTGAACAGGATCAG                                                                                                                                                             >  1:31917/1‑149     GTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATACGCCCGGAATGTCGATGAAGTCCTTGAGCGTCGCGCGCCCTTCACCGTCGCTGAACTGGGTCAGCACGTCGAACGGTTTGTTGAACAGGATCAGGCG                                                                                                                                                          >  4:72265/1‑149        AGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATACGCCCGGAATGTCGATGAAGTCCTTGAGCGTCGCGCGCCCTTCACCGTCGCTGAACTGGGTCAGCACGTCGAACGGTTTGTTGAACAGGATCAGGCGCGG                                                                                                                                                       >  4:302454/1‑149                                          GCCCGGCCGGGTATACGCCCGGAATGTCGATGAAGTCCTTGAGCGTCGCGCGCCCTTCACCGTCGCTGAACTGGGTCAGCACGTCGAACGGTTTGTTGAACAGGATCAGGCGCGG                                                                                                                                                       <  3:294348/115‑1                                          GCCCGGCCGGGTATACGCCCGGAATGTCGATGAAGTCCTTGAGCGTCGCGCGCCCTTCACCGTCGCTGAACTGGGTCAGCACGTCGAACGGTTTGTTGAACAGGATCAGGCGCGG                                                                                                                                                       >  4:294348/1‑115                                                            CCGGAATGTCGATGAAGTCCTTGAGCGTCGCGCGCCCTTCACCGTCGCTGAACTGGGTCAGCACGTCGAACGGTTTGTTGAACAGGATCAGGCGCGGCCTGCCGCCGGCCCGCGTCGCCAGGCCAAGGCGCCACCCGCCGAGCCGCGCC                                                                                                   <  6:14593/149‑1                                                                                TTGAGCGTCGCGCGCCCTTCACCGTCGCTGAACTGGGTCAGCACGTCGAACGGTTTGTTGAACAGGATCAGGCGCGGCCTGCCGCCGGCCCGCGTCGCCAGGCCAAGGCGCCACCCGCCGAGCCGCGC                                                                                                    <  1:14823/128‑1                                                                                TTGAGCGTCGCGCGCCCTTCACCGTCGCTGAACTGGGTCAGCACGTCGAACGGTTTGTTGAACAGGATCAGGCGCGGCCTGCCGCCGGCCCGCGTCGCCAGGCCAAGGCGCCACCCGCCGAGCCGCGC                                                                                                    >  2:14823/1‑128                                                                                                                                                       GCGCGGCCTGCCGCCGGCCCGCGTCGCCAGGCCAAGGCGCCACCCGCCGAGCCGCGCCTGATCCTGTTCAACAAACCGTTCGACGTGCTGACCCAGTTCAGCGACGGTGAAGGGCGCGCGACGCTCAAGGACTTCATCGACATTCCGGG        <  1:133754/149‑1                                                                                                                                                       GCGCGGCCTGCCGCCGGCCCGCGTCGCCAGGCCAAGGCGCCACCCGCCGAGCCGCGCCTGATCCTGTTCAACAAACCGTTCGACGTGCTGACCCAGTTCAGCGACGGTGAAGGGCGCGCGACGCTCAAGGACTTCATCGACATTCCGGG        >  2:109251/1‑149                                                                                                                                                       GCGCGGCCTGCCGCCGGCCCGCGTCGCCAGGCCAAGGCGCCACCCGCCGAGCCGCGCCTGATCCTGTTCAACAAACCGTTCGACGTGCTGACCCAGTTCAGCGACGGTGAAGGGCGCGCGACGCTCAAGGACTTCATC                   <  1:200971/138‑1                                                                                                                                                       GCGCGGCCTGCCGCCGGCCCGCGTCGCCAGGCCAAGGCGCCACCCGCCGAGCCGCGCCTGATCCTGTTCAACAAACCGTTCGACGTGCTGACCCAGTTCAGCGACGGTGAAGGGCGCGCGACGCTCAAGGACTTCATC                   >  2:200971/1‑138                                                                                                                                                             CCTGCCGCCGGCCCGCGTCGCCAGGCCAAGGCGCCACCCGCCGAGCCGCGCCTGATCCTGTTCAACAAACCGTTCGACGTGCTGACCCAGTTCAGCGACGGTGAAGGGCGCGCGACGCTCAAGGACTTCATCGACATTCCGGGCGTATc  >  2:77994/1‑148                                                                                                                                                                                                                                                                                                                   GTTGGTCAGCAACAGCAAGCCTTCGCTGTCGCGGTCCAGCCGCCCGGCCGGGTATACGCCCGGAATGTCGATGAAGTCCTTGAGCGTCGCGCGCCCTTCACCGTCGCTGAACTGGGTCAGCACGTCGAACGGTTTGTTGAACAGGATCAGGCGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5439110‑5439266 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggcgcggcCTGCCGCCGGCCCGCGTCGCCAGGCCAAGGCGCCACCCGCCGAGCCGCGCCTGATCCTGTTCAACAAACCGTTCGACGTGCTGACCCAGTTCAGCGACGGTGAAGGGCGCGCGACGCTCAAGGACTTCATCGACATTCCGGGCGTATA  <  NC_002947/5439309‑5439162

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.