New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5490519 =	58 (1.150)	5 (0.100)	4/246	NT	8.5%	coding (264/657 nt)	PP_5714	hypothetical protein
	?	NC_002947	5490573 =	52 (1.080)					coding (210/657 nt)	PP_5714	hypothetical protein

TGCGTTTGCCCAGCAAGTTGCCTGGGGGGACTTCAACGAAGGCCTGGAGCCGGACTGGTTCAGGAACTACTGGCGTAACCTTGCGTTTCTGGGCTTTGATGGCAAGCTCGCGCCCACGGCGACTCGACCGGGGCCGGACAGGGCCAGCCTTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5490672‑5490519 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttgccATCAAAGCCCAGAAACGCAAGGTTACGCCAGTAGTTCCTGAACCAGTCCGGCTCCAGGCCTTCGTTGAAGTCCCCCCAGGCAACTTGCTGGGCAAACGCATTGGCCAACAGGATGTCGTCACGGGCTTCGCGACTAACACCTGGC  >  NC_002947/5490573‑5490717                                                                                                                                                                                                                                                                                                             TGCGTTTGCCCAGCAAGTTGCCTGGGGGGACTTCAACGAAGGCCTGGAGCCGGACTGGTTCAGGAACTACTGGCGTAACCTTGCGTTTCTGGGCTTTGATGGCAAGCTCGCGCCCACGGCGACTCGACCGGGGCCGGACAGGGCCAGCC                                                                                                                                                        >  8:9344/1‑149   CGTTTGCCCAGCAAGTTGCCTGGGGGGACTTCAACGAAGGCCTGGAGCCGGACTGGTTCAGGAACTACTGGCGTAACCTTGCGTTTCTGGGCTTTGATGGCAAGCTCGCGCCCACGGCGACTCGACCGGGGCCGGACAGGGCCAGCCTT                                                                                                                                                      <  7:142508/149‑1    GTTTGCCCAGCAAGTTGCCTGGGGGGACTTCAACGAAGGCCTGGAGCCGGACTGGTTCAGGAACTACTGGCGTAACCTTGCGTTTCTGGGCTTTGATGGCAAGCTCGCGCCCACGGCGACTCGACCGGGGCCGGACAGGGCCAGCCTTG                                                                                                                                                     >  4:246126/1‑149     TTTGCGCAGCAAGTTGCGTGGGGGGACTTCAACGAAGGCCTGGAGCCGGACTGGTTCAGGAACTACTGGCGTAACCTTGCGTTTCTGGGCTTTGATGGCAAGCTCGCGCCGACGGCGACTCGACCGGGGCCGGACAGGGCCAGCCTTGC                                                                                                                                                    <  6:7460/149‑1     TTTGCCCAGCAAGTTGCCTGGGGGGACTTCAACGAAGGCCTGGAGCCGGACTGGTTCAGGAACTACTGGCGTAACCTTGCGTTTCTGGGCTTTGATGGCAAGCTCGCGCCCACGGCGACTCGACCGGGGCCGGACAGGGCCAGCCTTGC                                                                                                                                                    <  3:246126/149‑1     TTTGCCCAGCAAGTTGCCTGGGGGGACTTCAACGAAGGCCTGGAGCCGGACTGGTTCAGGAACTACTGGCGTAACCTTGCGTTTCTGGGCTTTGATGGCAAGCTCGCGCCCACGGCGACTCGACCGGGGCCGGACAGGGCCAGCCTTGC                                                                                                                                                    <  8:106329/149‑1     TTTGCCCAGCAAGTTGCCTGGGGGGACTTCAACGAAGGCCTGGAGCCGGACTGGTTCAGGAACTACTGGCGTAACCTTGCGTTTCTGGGCTTTGATGGCAAGCTCGCGCCCACGGCGACTCGACCGGGGCCGGACAGGGCCAGCCTTGC                                                                                                                                                    <  8:35571/149‑1                                                                                              CTTTGATGGCAAGCTCGCGCCCACGGCGACTCGACCGGGGCCGGACAGGGCCAGCCTTGCCATCAAAGCCCAGAAACGCAAGGTTACGCCAGTAGTTCCTGAACCAGTCCGGCTCCCGGCCTTCGTTGAAGTCCCCCCAGGCACCTTGC                                                           >  8:172619/1‑149                                                                                              CTTTGATGGCAAGCTCGCGCCCACGGCGACTCGACCGGGGCCGGACAGGGCCAGCCTTGCCATCAAAGCCCAGAAACGCAAGGTTACGCCAGTAGTTCCTGAACCAGTCCGGCTCCAGGCCTTCGTTGAAGTCCCCCCAGGCAACTTGC                                                           >  6:193025/1‑149                                                                                               TTTGATGGCAAGCTCGCGCCCACGGCGACTCGACCGGGGCCGGACAGGGCCAGCCTTGCCATCAAAGCCCAGAAACGCAAGGTTACGCCAGTAGTTCCTGAACCAGTCCGGCTCCAGGCCTTCGTTGAAGTCCCCCCAGGCAACTTGCT                                                          >  1:203089/1‑149                                                                                                 TGATGGCAAGCTCGCGCCCACGGCGACTCGACCGGGGCCGGACAGGGCCAGCCTTGCCATCAAAGCCCAGAAACGCAAGGTTACGCCAGTAGTTCCTGAACCAGTCCGGCTCCAGGCCTTCGTTGAAGTCCCCCCAGGCAACTTGCT                                                          <  5:193025/147‑1                                                                                                                                 CGGGGCCGGACAGGGCCAGCCTTGCCATCAAAGCCCAGAAACGCAAGGTTACGCCAGTAGTTCCTGAACCAGTCCGGCTCCAGGCCTTCGTTGAAGTCCCCCCAGGCAACTTGCTGGGCAAACGCATTGGCCAACAGGATGTCGTCACG                        <  2:203089/149‑1                                                                                                                                                          CATCAAAGCCCAGAAACGCAAGGTTACGCCAGTAGTTCCTGAACCAGTCCGGCTCCAGGCCTTCGTTGAAGTCCCCCCAGGCAACTTGCTGGGCAAACGCATTGGCCAACAGGATGTCGTCACGGGCTTCGCGACTAACACCTGGC  >  3:273542/1‑146                                                                                                                                                                                                                                                                                                             TGCGTTTGCCCAGCAAGTTGCCTGGGGGGACTTCAACGAAGGCCTGGAGCCGGACTGGTTCAGGAACTACTGGCGTAACCTTGCGTTTCTGGGCTTTGATGGCAAGCTCGCGCCCACGGCGACTCGACCGGGGCCGGACAGGGCCAGCCTTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5490672‑5490519 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttgccATCAAAGCCCAGAAACGCAAGGTTACGCCAGTAGTTCCTGAACCAGTCCGGCTCCAGGCCTTCGTTGAAGTCCCCCCAGGCAACTTGCTGGGCAAACGCATTGGCCAACAGGATGTCGTCACGGGCTTCGCGACTAACACCTGGC  >  NC_002947/5490573‑5490717

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.