New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5639854 = | 65 (1.290) | 3 (0.060) | 3/246 | NT | 4.5% | coding (946/1320 nt) | PP_4950 | hypothetical protein |
? | NC_002947 | 5639898 = | 65 (1.350) | coding (990/1320 nt) | PP_4950 | hypothetical protein | |||||
Rejected: Frequency below/above cutoff threshold. |
CCCGGTCATGCGCGCCGCTGGCAGGTCTGAGTAGTTCAGGTACCACAGGTTGCTGATGTACAGCCCGGTGCCTAGACGCTCAAGGATCTGCGCACTGGCCAGATTGCCCGGCGCCAGGCTGAGCGCACAGGGCGACTCGTAGCCGTCGGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5640006‑5639854 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgccGGGCAATCTGGCCAGTGCGCAGATCCTTGAGCGTCTAGGCACCGGGCTGTACATCAGCAACCTGTGGTACCTGAACTACTCAGACCTGCCAGCGGCGCGCATGACCGGGCTGACCCGCTTCGCCACTTTCTGGGTAGAAGACGG > NC_002947/5639898‑5640041 CCCGGTCATGCGCGCCGCTGGCAGGTCTGAGTAGTTCAGGTACCACAGGTTGCTGATGTACAGCCCGGTGCCTAGACGCTCAAGGATCTGCGCACTGGCCAGATTGCCCGGCGCCAGGCTGAGCGCACAGGGCGCCTCGTAGCCGTCGG > 7:194679/1‑149 CCGGTCATGCGCGCCGCTGGCAGGTCTGAGTAGTTCAGGTACCACAGGTTGCTGATGTACAGCCCGGTGCCTAGACGCTCAAGGATCTGCGCACTGGCCAGATTGCCCGGCGCCAGGCTGAGCGCACAGGGCGACTCGTAGCCGTCGGC < 8:272331/149‑1 GTCATGCGCGCCGCTGGCAGGTCTGAGTAGTTCAGGTACCACAGGTTGCTGATGTACAGCCCGGTGCCTAGACGCTCAAGGATCTGCGCACTGGCCAGATTGCCCGGCGCCAGGCTGAGCGCACAGGGCGACTCGTAGCCGTCGGCGC > 5:318136/1‑148 GCCCGGCGCCAGGCTGAGCGCACAGGGCGACTCGTAGCCGTCGGCGCCGGGCAATCTGGCCAGTGCGCAGATCCTTGAGCGTCTAGGCACCGGGCTGTACATCAGCAACCTGTGGTACCTGAACTACTCAGACCTGCCAGCGGCGCGCA > 7:158027/1‑149 CCGGCGCCAGGCTGAGCGCACAGGGCGACTCGTAGCCGTCGGCGCCGGGCAATCTGGCCAGTGCGCAGATCCTTGAGCGTCTAGGCACCGGGCTGTACATAAGCAACCTGTGGTACCTGAACTACTCAGACCTGCCAGCGGCGCGCAT > 6:34089/1‑148 GCCAGGCTGAGCGCACAGGGCGACTCGTAGCCGTCGGCGCCGGGCAATCTGGCCAGTGCGCAGATCCTTGAGCGTCTAGGCACCGGGCTGTACATCAGCAACCTGTGGTACCTGAACTACTCAGACCTGCCAGCGGCGCGCATGACCGG < 8:158027/149‑1 GCGCCGGGCAATCTGGCCAGTGCGCAGATCCTTGAGCGTCTAGGCACCGGGCTGTACATCAGCAACCTGTGGTACCTGAACTACTCAGACCTGCCAGCGGCGCGCATGACCGGGCTGACCCGCTTCGCCACTTTCTGGGTAGAAGACGG > 6:248997/1‑149 GCGCCGGGCAATCTGGCCAGTGCGCAGATCCTTGAGCGTCTAGGCACCGGGCTGTACATCAGCAACCTGTGGTACCTGAACTACTCAGACCTGCCAGCAGCGCGCATGACCGGGCTGACCCGCTTCGCCACTTTCTGGGTAGAAGACG < 4:158143/148‑1 CCCGGTCATGCGCGCCGCTGGCAGGTCTGAGTAGTTCAGGTACCACAGGTTGCTGATGTACAGCCCGGTGCCTAGACGCTCAAGGATCTGCGCACTGGCCAGATTGCCCGGCGCCAGGCTGAGCGCACAGGGCGACTCGTAGCCGTCGGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5640006‑5639854 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgccGGGCAATCTGGCCAGTGCGCAGATCCTTGAGCGTCTAGGCACCGGGCTGTACATCAGCAACCTGTGGTACCTGAACTACTCAGACCTGCCAGCGGCGCGCATGACCGGGCTGACCCGCTTCGCCACTTTCTGGGTAGAAGACGG > NC_002947/5639898‑5640041 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |