New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5692552 =	71 (1.410)	3 (0.070)	3/236	NT	4.8%	intergenic (+21/‑149)	PP_4994/PP_4995	hypothetical protein/exopolysaccharide biosynthesis protein
	?	NC_002947	5692636 =	54 (1.170)					intergenic (+105/‑65)	PP_4994/PP_4995	hypothetical protein/exopolysaccharide biosynthesis protein
Rejected: Frequency below/above cutoff threshold.

GGGTTTTCATGGGGGATAGTGTGGCGCCAGGTGGCGAGACTGACAAGGTGGGCTTTGTGTCGCTTTTGCCAGCCCCTTCGCGGGCATGCCCGCTCCCGCCGATACTCCACAGGCTTCAGCG‑CCGGTGAGCAACCCGTGGGAGCGGGCGTGCCCGCGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5692710‑5692552 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcccgcgaagGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGA  >  NC_002947/5692636‑5692782                                                                                                                                                                                                                                                                                                                     GGGTTTTCATGGGGGATAGTGTGGCGCCAGGTGGCGAGACTGACAAGGTGGGCTTTGTGTCGCTTTTGCCAGCCCCTTCGCGGGCATGCCCGCTCCCGCCGATACTCCACAGGCTTCAGCG‑CCGGTGAGCAACCCGTGGGAGCGGGCGT                                                                                                                                                               >  5:204354/1‑149    TTTTCATGGGGGATAGTGTGGCGCCAGGGGGCGAGACTGACAAGGTGGGCTTTGTGTCGCTTTTGCCAGCCCCTTCGCGGGCATGCCCGCTCCCGCCGATACTCCACAGGCTTCAGCGCCCGGTGAGCAACCCGTGGGAGCGGGCGTGC                                                                                                                                                             <  1:19918/149‑1       TCATGGGGGATAGTGTGGCGCCAGGTGGCGAGACTGACAAGGTGGGCGTTGTGTCGCTTTTGCCAGCCCCTTCGCGGGCATGCCCGCTCCCGCCGATACTCCACAGGCTTCAGCG‑CCGGTGAGCAACCCGTGGGAGCGGGCGTGCCCG                                                                                                                                                          <  5:191486/148‑1                                                                                  GGGCATGCCCGCTCCCGCCGATACTCCACAGGCTTCAGCG‑CCGGTGAGCAACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAA                                                                               >  6:195667/1‑148                                                                                         CCCGCTCCCGCCGATACTCCACAGGCTTCAGCG‑CCGGTGAGCAACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCG                                                                       <  5:195667/149‑1                                                                                            GCTCCCGCCGATACTCCACAGGCTTCAGCG‑CCGGTGAGCAACCCGTGGGAGCGGGCGTGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCAC                                                                    >  5:225934/1‑149                                                                                                                                                           GCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAAC            <  1:97483/143‑1                                                                                                                                                           GCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAAC            >  2:97483/1‑143                                                                                                                                                               AGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGA  <  6:225934/149‑1                                                                                                                                                                                                                                                                                                                     GGGTTTTCATGGGGGATAGTGTGGCGCCAGGTGGCGAGACTGACAAGGTGGGCTTTGTGTCGCTTTTGCCAGCCCCTTCGCGGGCATGCCCGCTCCCGCCGATACTCCACAGGCTTCAGCG‑CCGGTGAGCAACCCGTGGGAGCGGGCGTGCCCGCGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5692710‑5692552 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcccgcgaagGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCCGAACTTCGCCCAGA  >  NC_002947/5692636‑5692782

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.