New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6062972	54 (1.070)	4 (0.080)	4/248	NT	7.2%	intergenic (‑85/‑140)	rubA/ubiC	rubredoxin‑1/chorismate pyruvate‑lyase
	?	NC_002947	= 6063004	51 (1.050)					intergenic (‑117/‑108)	rubA/ubiC	rubredoxin‑1/chorismate pyruvate‑lyase

TAGATCAGGCCACAGACAATACATTGCCACTTTTTCATCAGGTCTATTTCCTCGGTTCAGGCTGGGGCTTGTGTTGCTGCTGATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6062850‑6062972 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgcTGGCCCTGTGCGCGGGCAAGCCCGCCAGGCCTGCGCGGTCAC  <  NC_002947/6063004‑6062963                                                                                                                                                                       TAGATCAGGCCACAGACAATACATTGCCACTTTTTCATCAGGTCTATTTCCTCGGTTCAGGCTGGGGCTTGTGTTGCTGCTGATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGCTGGCCCTGTGCGCGGGCAAGCCCGC                   >  5:276191/1‑148            ACAGACAATACATTGCCACTTTTTCATCAGGTCTATTTCCTCGGTTCAGGCTGGGGCTTATGTTGCTGCTGATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGCTGGCCCTGTGCGCGGGCAAGCCCGCCAGGCCTGCGC        <  5:30656/148‑1            ACAGACAATACATTGCCACTTTTTCATCAGGTCTATTTCCTCGGTTCAGGCTGGGGCTTATGTTGCTGCTGATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGCTGGCCCTGTGCGCGGGCAAGCCCGCCAGGCCTGCGC        >  6:30656/1‑148                 CAATACATTGCCACTTTTTCATCAGGTCTATTTCCTCGGTTCAGGCTGGGGCTTGTGTTGCTGCTGATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGCTGGCCCTGTGCGCGGGCAAGCCCGCCAGGCCTGCGCGGTCAC  <  6:276191/149‑1                                                                                                                                                                       TAGATCAGGCCACAGACAATACATTGCCACTTTTTCATCAGGTCTATTTCCTCGGTTCAGGCTGGGGCTTGTGTTGCTGCTGATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6062850‑6062972 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgcTGGCCCTGTGCGCGGGCAAGCCCGCCAGGCCTGCGCGGTCAC  <  NC_002947/6063004‑6062963

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.