New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1273264	35 (0.690)	3 (0.070)	3/228	NT	7.6%	intergenic (+55/+113)	PP_1113/PP_1114	pyridoxal‑phosphate dependent enzyme family protein/SEC‑C domain‑containing protein
	?	NC_002947	= 1273323	42 (0.940)					intergenic (+114/+54)	PP_1113/PP_1114	pyridoxal‑phosphate dependent enzyme family protein/SEC‑C domain‑containing protein

GGTATGTCGAGACCACCCTGGTGACCATCGCCTATGATGCCGGCCTCTGGTACCAGGACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGTCGATCAGGCGCCGTGGCACTTCTTGTACTTCTTCTCGC  >  NC_002947/1273118‑1273411                                                                                                                                                   |                                                                                                                                                    ggTATGTCGAGACCACCCTGGTGACCATCGCCTATGATGCCGGCCTCTGGTTCCAGGACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCaa                                                                                                                                                   <  4:4413/149‑1 (MQ=255)       tCGAGACCACCCTGGTGACCATCGCCTATGATGCCGGCCTCTGGTACCAGGACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCCGGCACGGAAACTGTGGGAGCGGGCAAGCCcgc                                                                                                                                             >  6:127701/1‑149 (MQ=255)         gagaCCACCCTGGTGACCATCGCCTATGATGCCGGCCTCTGGTACCAGGACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCcgcg                                                                                                                                            >  2:190564/1‑148 (MQ=255)              caccCTGGTGACCATCGCCTATGATGCCGGCCTCTGGTACCAGGACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAg                                                                                                                                      >  8:247828/1‑149 (MQ=255)              caccCTGGTGACCATCGCCTATGATGCCGGCCTCTGGTACCAGGACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAg                                                                                                                                      <  6:238907/149‑1 (MQ=255)               accCTGGTGACCATCGCCTATGATGCCGGCCTCTGGTACCAGGACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAgg                                                                                                                                     <  4:289095/149‑1 (MQ=255)                 ccTGGTGACCATCGCCTATGATGCCGGCCTCTGGTACCAGGACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGc                                                                                                                                    >  4:170142/1‑148 (MQ=255)                 ccTGGTGACCATCGCCTATGATGCCGGCCTCTGGTACCAGGACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCg                                                                                                                                   <  3:170142/149‑1 (MQ=255)                        aCCATCGCCTATGATGCCGGCCTCTGGTACCAGGACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGt                                                                                                                            <  2:24987/149‑1 (MQ=255)                              gCCTATGATGTCGGCCTCTGGTACCAGGACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATg                                                                                                                       <  2:258269/148‑1 (MQ=255)                               ccTATGATGCCGGCCTCTGGTACCAGGACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGc                                                                                                                     <  7:247828/149‑1 (MQ=255)                                 tATGATGCCGGCATCTGGTACCAGGACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCCAGCCCGCGAAGCAGGCGACGCGGTGGATgcta                                                                                                                    >  4:47211/1‑145 (MQ=255)                                        ccGGCCTCTGGTACCAGGACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTc                                                                                                            >  4:237707/1‑149 (MQ=255)                                                tGGTACCAGGACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCgt                                                                                                      <  2:192648/147‑1 (MQ=255)                                                  gTACCAGGACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCAAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCCCGCAGCAGGCGACGCGGTGGATGGCACGGGATTCGCCCGTGTTc                                                                                                  >  6:228542/1‑149 (MQ=255)                                                   tACCAGGACGTGTGGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGTCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTcg                                                                                                 <  5:228542/149‑1 (MQ=255)                                                      cAGGACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCgg                                                                                              <  3:237707/149‑1 (MQ=255)                                                        ggACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGgc                                                                                            >  8:81418/1‑149 (MQ=255)                                                        ggACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGgc                                                                                            <  1:190564/149‑1 (MQ=255)                                                            cTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCgc                                                                                        <  1:157218‑M2/149‑3 (MQ=255)                                                              gTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCgccc                                                                                      >  7:243382‑M2/1‑145 (MQ=255)                                                              gTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCgccc                                                                                      <  5:56643‑M2/149‑5 (MQ=255)                                                                   gggCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCgcgcccgcgaacacgggcgaagcccgtgccatccaccgcgtcgcctgcttcgcgggcttgcccgctcc                                                                                 <  6:91111‑M1/149‑69 (MQ=255)                                                                         aCCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCgcgcccgcgaacacgggcgaagcccgtgccatccaccgcgtcgcctgcttcgcgggcttgc                                                                                        >  8:156429‑M1/1‑75 (MQ=255)                                                                         aCCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCgcgcccgcgaacacgggcgaagcccgtgccatccaccgcgtcgcctgcttcgcgggcttgc                                                                                        <  7:156429‑M1/136‑62 (MQ=255)                                                                               gAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTc                                                                       >  1:227895/1‑147 (MQ=255)                                                                                       gcgTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCgcccgct                                                                                   <  4:288196‑M2/127‑8 (MQ=255)                                                                                       gcgTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCgcccgct                                                                                   >  3:288196‑M2/1‑120 (MQ=255)                                                                                                ccTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGAtttt                                                    >  6:229477/1‑149 (MQ=255)                                                                                                        aGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGt                                            >  3:23705/1‑149 (MQ=255)                                                                                                          gCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCa                                          <  4:23705/149‑1 (MQ=255)                                                                                                           cTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAg                                         <  7:81418/149‑1 (MQ=255)                                                                                                            tCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGt                                        >  3:21209/1‑149 (MQ=255)                                                                                                              aTGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGTc                                       >  3:295060/1‑148 (MQ=255)                                                                                                                 aTCCAGAGGCTGGCACGGAAAGTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGTCGAt                                    <  2:278135/148‑1 (MQ=255)                                                                                                                 aTCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGTCGAt                                    >  8:77479/1‑148 (MQ=255)                                                                                                                    cAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGTCGATCAgg                                <  7:77479/149‑1 (MQ=255)                                                                                                                           tGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGTCGATCAGGCGCCGTg                         >  3:82403/1‑149 (MQ=255)                                                                                                                            ggCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGTCGATCAGGCGCCGTgg                        <  5:103943/149‑1 (MQ=255)                                                                                                                                 ggAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGTCGATCAGGCGCCGTGGCAct                    >  8:270501/1‑148 (MQ=255)                                                                                                                                     aCTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGTCGATCAGGCGCCGTGGCACTTCTTg               <  4:82403/149‑1 (MQ=255)                                                                                                                                     aCTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGTCGATCAGGCGCCGTGGCACTTCTTg               <  4:21209/149‑1 (MQ=255)                                                                                                                                      cTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGTCGATCAGGCGCCGTGGCACTTCTTGt              <  5:127701/149‑1 (MQ=255)                                                                                                                                         tgGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGTCGATCAGGCGCCGTGGCACTTCTTGTAct           <  6:69060/149‑1 (MQ=255)                                                                                                                                           ggAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCgcccgctcccacagtttccgtgccagcctctggatcatgagcctgacacaggtggctacgcggcctttcgccggtttgccc         <  6:91111‑M2/149‑82 (MQ=255)                                                                                                                                             aGCGGGCgcgcccgcgaacacgggcgaagcccgtgccatccaccgcgtcgcctgcttcgcgggcttgcccgctcccacagtttccgtgccagcctctggatcatgagcctgacacaggtggctacgc                             <  4:288196‑M1/127‑121 (MQ=255)                                                                                                                                             aGCGGGCgcgcccgcgaacacgggcgaagcccgtgccatccaccgcgtcgcctgcttcgcgggcttgcccgctcccacagtttccgtgccagcctctggatcatgagcctgacacaggtggctacgc                             >  3:288196‑M1/1‑7 (MQ=255)                                                                                                                                                gggCgcgcccgcgaacacgggcgaagcccgtgccatccaccgcgtcgcctgcttcgcgggcttgcccgctcccacagtttccgtgccagcctctggatcatgagcctgacacaggtggctacgcggcctttcgccggtttgcccccaac    >  7:243382‑M1/1‑4 (MQ=255)                                                                                                                                                gggCgcgcccgcgaacacgggcgaagcccgtgccatccaccgcgtcgcctgcttcgcgggcttgcccgctcccacagtttccgtgccagcctctggatcatgagcctgacacaggtggctacgcggcctttcgccggtttgcccccaac    <  5:56643‑M1/149‑146 (MQ=255)                                                                                                                                                gggCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGTCGATCAGGCGCCGTGGCACTTCTTGTACTTCTtctc    <  4:295060/149‑1 (MQ=255)                                                                                                                                                  gcgcgcccgcgaacacgggcgaagcccgtgccatccaccgcgtcgcctgcttcgcgggcttgcccgctcccacagtttccgtgccagcctctggatcatgagcctgacacaggtggctacgcggcctttcgccggtttgcccccaacag  <  1:157218‑M1/149‑148 (MQ=255)                                                                                                                                                  gCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCgcccgctcccacagtttccgtgccagcctctggatcatgagcctgacacaggtggctacgcggcctttcgccggt               >  8:156429‑M2/1‑61 (MQ=255)                                                                                                                                                  gCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCgcccgctcccacagtttccgtgccagcctctggatcatgagcctgacacaggtggctacgcggcctttcgccggt               <  7:156429‑M2/136‑76 (MQ=255)                                                                                                                                                   |                                                                                                                                                    GGTATGTCGAGACCACCCTGGTGACCATCGCCTATGATGCCGGCCTCTGGTACCAGGACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGTCGATCAGGCGCCGTGGCACTTCTTGTACTTCTTCTCGC  >  NC_002947/1273118‑1273411

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.