New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1431709 =	50 (0.990)	4 (0.080)	4/246	NT	7.9%	coding (163/336 nt)	PP_1253	ArsR family transcriptional regulator
	?	NC_002947	1431746 =	46 (0.960)					coding (126/336 nt)	PP_1253	ArsR family transcriptional regulator

CAGCCCGGGAAACCGCTCGCCCAGCATCTCGCTACGCAGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGTGGCGGACGATTTCCAGGCGCACGGGGTCGCTGAGCGCATAGAGCAGGCGTTCAAGAATGAGGTCGTCGGGGTTGGGATGTTTATAGGCTCGCATGGTTGACATGATAA  >  NC_002947/1431563‑1431849                                                                                                                                                   |                                                                                                                                             cagcCCGGGAAACCGCTCGCCCAGCATCTCGCTACGCAGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGc                                                                                                                                            <  4:144879/149‑1 (MQ=255)   ttcgatcataatcgaactatggcaattaatgaaacccccgttatcatgtcaaccatgcgagcctataaacatcccaaccccgacgacctcattcttgaacgcctgctctatgcgctcagcgaccccgtgcgcctggaaatcgtcCGCca                                                                                                                                          <  6:220327‑M1/5‑1 (MQ=255)    cccGGGAAACCGCTCGCCCAGCATCTCGCTACGCAGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGCca                                                                                                                                          >  4:214344/1‑148 (MQ=255)               gCTCGCCCAGCATCTCGCTACGCAGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGCCACAGCTGGCCTCg                                                                                                                              >  2:108295/1‑149 (MQ=255)                     ccAGCATCTCGCTACGCAGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGCCACAGCTGGCCTCGGCCACg                                                                                                                        >  4:261991/1‑149 (MQ=255)                            ctcGCTACGCAGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGCCACAGCTGGCCTCGGCCACGCCGGc                                                                                                                   >  6:78288/1‑147 (MQ=255)                             tcGCTACGCAGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGCCACAGCTGGCCTCGGCCACGCCGGCCAg                                                                                                                >  6:114261/1‑149 (MQ=255)                               gCTACGCAGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGt                                                                                                              <  5:238525/149‑1 (MQ=255)                                  aaacccccgttatcatgtcaaccatgcgagcctataaacatcccaaccccgacgacctcattcttgaacgcctgctctatgcgctcagcgaccccgtgcgcctggaaatcgtcCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGTgg                                                                                                            >  2:298321‑M1/114‑148 (MQ=255)                                     cccccgttatcatgtcaaccatgcgagcctataaacatcccaaccccgacgacctcattcttgaacgcctgctctatgcgctcagcgaccccgtgcgcctggaaatcgtcCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGTGGCGGa                                                                                                        >  2:264016‑M1/111‑149 (MQ=255)                                     cAGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGTGGCGGa                                                                                                        <  5:114261/149‑1 (MQ=255)                                      ccccgttatcatgtcaaccatgcgagcctataaacatcccaaccccgacgacctcattcttgaacgcctgctctatgcgctcagcgaccccgtgcgcctggaaatcgtcCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGTGGCGGAc                                                                                                       >  2:191125‑M1/110‑149 (MQ=255)                                      ccccgttatcatgtcaaccatgcgagcctataaacatcccaaccccgacgacctcattcttgaacgcctgctctatgcgctcagcgaccccgtgcgcctggaaatcgtcCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGTGGCGGAc                                                                                                       <  1:191125‑M1/40‑1 (MQ=255)                                        cGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGCCACAGCt                                                                                                                                     >  2:215173/1‑117 (MQ=255)                                        cGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGCCACAGCt                                                                                                                                     <  1:215173/117‑1 (MQ=255)                                               atatGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGTGGCGGACGATTTCCAg                                                                                              <  3:214344/149‑1 (MQ=255)                                                         tCCCCACATTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGTGGCGGACGATTTCCAGGCGCACgggg                                                                                    >  1:212621/1‑149 (MQ=255)                                                           cccACATTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCAACCAGCTCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGTGGCGGACGATTTCCAGGCGCACGGGGTc                                                                                  >  8:85423/1‑149 (MQ=255)                                                             cacaTTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGCCACAGCTGCCCTCGGCCACGCCTGCCAGGTGGCGCACGATTTCCAGGCGCACGGGGTCGc                                                                                >  4:210023/1‑149 (MQ=255)                                                                aTTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGTGGCGGACGATTTCCAGGCGCACGGGGTCGCt                                                                               >  3:152957/1‑147 (MQ=255)                                                                 ttGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGTGGCGGACGATTTCCAGGCGCACGGGGTCGCTGAg                                                                            <  7:85423/149‑1 (MQ=255)                                                                   gCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGTGGCGGACGATTTCCAGGCGCACGGGGTCGCTGAgcg                                                                          >  6:33929/1‑149 (MQ=255)                                                                   gCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGTGGCGGACGATTTCCAGGCGCACGGGGTCGCTGAgc                                                                           <  5:78288/148‑1 (MQ=255)                                                                    cGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGTGGCGGACGATTTCCAGGCGCACGGGGTCGCTGAgcgc                                                                         <  5:75387/149‑1 (MQ=255)                                                                    cGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGTGGCGGACGATTTCCAGGCGCACGGGGTCGCTGAgcgc                                                                         <  1:108295/149‑1 (MQ=255)                                                                             aCCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGTGGCGGACGATTTCCAGGCGCACGGGGTCGCTGAGCGCATAGAGCAg                                                                >  3:170826/1‑149 (MQ=255)                                                                             aCCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGTGGCGGACGATTTCCAGGCGCACGGGGTCGCTGAGCGCATAGAGCAg                                                                >  4:290071/1‑149 (MQ=255)                                                                             aCCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGTGGCGGACGATTTCCAGGCGCACGGGGTCGCTGAGCGCATAGAGCAg                                                                <  4:152957/149‑1 (MQ=255)                                                                              ccAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGTGGCGGACGATTTCCAGGCGCACGGGGTCGCTGAGCGCATAGAGCAgg                                                               <  3:261991/149‑1 (MQ=255)                                                                              ccAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGTGGCGGACGATTTCCAGGCGCACGGGGTCGCTGAGCGCATAGAGCAgg                                                               >  6:205114/1‑149 (MQ=255)                                                                                  cccTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGTGGCGGACGATTTCCAGGCGCACGGGGTCGCTGAGCGCATAGAGCAGGCGt                                                            >  3:153785/1‑148 (MQ=255)                                                                                       cATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGTGGCGGACGATTTCCAGGCGCACGGGGTCGCTGAGCGCATAGAGCAGGCGTTCaa                                                        <  1:141766/147‑1 (MQ=255)                                                                                         tCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGTGGCGGACGATTTCCAGGCGCACGGGGTCGCTGAGCGCATAGAGCAGGCGTTCAAGAAt                                                    <  5:302867/149‑1 (MQ=255)                                                                                             gCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGTGGCGGACGATTTCCAGGCGCACGGGGTCGCTGAGCGCATAGAGCAGGCGTTCAAGAATGAgg                                                <  5:205114/149‑1 (MQ=255)                                                                                                acacacGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGTGGCGGACGATTTCCAGGCGCACGGGGTCGCTGAGCGCATAGAGCAGGCGTTCAAGAATGAGgtag                                             >  1:259482/1‑147 (MQ=255)                                                                                                 cacacGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGTGGCGGACGATTTCCAGGCGCACGGGGTCGCTGAGCGCATAGAGCAGGCGTTCAAGAATGAGgtcgt                                            >  6:211164/1‑149 (MQ=255)                                                                                                  acacGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGTGGCGGACGATTTCCAGGCGCACGGGGTCGCTGAGCGCATAGAGCAGGCGTTCAAGAATGAg                                                 >  2:121635/1‑143 (MQ=255)                                                                                                  acacGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGTGGCGGACGATTTCCAGGCGCACGGGGTCGCTGAGCGCATAGAGCAGGCGTTCAAGAATGAg                                                 <  1:121635/143‑1 (MQ=255)                                                                                                  acacGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGTGGCGGACGATTTCCAGGCGCACGGGGTCGCTGAGCGCATAGAGCAGGCGTTCAAGAATGAGgtcgtc                                           <  4:153785/149‑1 (MQ=255)                                                                                                       gAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGTGGCGGACGATTTCCAGGCGCACGGGGTCGCTGAGCGCATAGAGCAGGCGTTCAAGAATGAGGTCGTCGGGGt                                      >  2:271142/1‑149 (MQ=255)                                                                                                        aaGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGTGGCGGACGATTTCCAGGCGCACGGGGTCGCTGAGCGCATAGAGCAGGCGTTCAAGAATGAGGTCGTCGGGGtt                                     <  2:212621/149‑1 (MQ=255)                                                                                                         aGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGTGGCGGACGATTTCCAGGCGCACGGGGTCGCTGAGCGCATAGAGCAGGCGTTCAAGAATGAGGTCGTCGGGGTTg                                    <  4:170826/149‑1 (MQ=255)                                                                                                         aGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGTGGCGGACGATTTCCAGGCGCACGGGGTCGCTGAGCGCATAGAGCAGGCGTTCAAGAATGAGGTCGTCGGGGTTg                                    <  5:33929/149‑1 (MQ=255)                                                                                                          gtggtgGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGTGGCGGACGATTTCCAGGCGCACGGGGTCGCTGAGCGCATAGAGCAGGCGTTCAAGAATGAGGTCGTCGGGGTTgg                                   <  5:211164/149‑1 (MQ=255)                                                                                                            ggtggGACATGCTCGACTTCGGCCGACCTACATCCAGCTCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGTGGCGGACGATTTCCAGGCGCACGGGGTCGCTGAGCGCATAGAGCAGGCGTTCAAGAATGAGGTCGTCGGGGTTGCGa                                 >  8:97397/1‑149 (MQ=255)                                                                                                                  aCATGCTCGACTTCGGCCGACCTCCATCCAGCTCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGTGGCGGACGATTTCCAGGCGCACGGGGTCGCTGAGCGCATAGAGCAGGCGTTCAAGAATGAGGTCGTCGGGGTTGGGATGTTta                           >  6:299408/1‑149 (MQ=255)                                                                                                                       cTCGACTTCGGCCGACCTCCATCCAGCTCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGTGGCGGACGATTTCCAGGCGCACGGGGTCGCTGAGCGCATAGAGCAGGCGTTCAAGAATGAGGTCGTCGGGGTTGGGATGTTTATAGGc                      >  4:140130/1‑149 (MQ=255)                                                                                                                        tCGACTTCGGCCGACCTCCATCCAGCTCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGTGGCGGACGATTTCCAGGCGCACGGGGTCGCTGAGCGCATAGAGCAGGCGTTCAAGAATGAGGTCGTCGGGGTTGGGATGTTtat                          >  5:324193/1‑144 (MQ=255)                                                                                                                        tCGACTTCGGCCGACCTCCATCCAGCTCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGTGGCGGACGATTTCCAGGCGCACGGGGTCGCTGAGCGCATAGAGCAGGCGTTCAAGAATGAGGTCGTCGGGGTTGGGATGTTtat                          <  6:324193/144‑1 (MQ=255)                                                                                                                             ttCGGCCGACCTCCATCCAGCTCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGTGGCGGACGATTTCCAGGCGCACGGGGTCGCTGAGCGCATAGAGCAGGCGTTCAAGAATGAGGTCGTCGGGGTTGGGATGTTTATAGGCTCGCAt                >  5:220327/1‑149 (MQ=255)                                                                                                                               cGGCCGACCTCCATCCAGCTCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGTGGCGGACGATTTCCAGGCGCACGGGGTCGCTGAGCGCATAGAGCAGGCGTTCAAGAATGAGGTCGTCGGGGTTGGGATGTTTATAGGCTCGCATgg              >  6:148854/1‑149 (MQ=255)                                                                                                                                ggCCGACCTCCATCAAGCTCGCCAAAGCTGGCCTCGGCCACGCCGGCCAGGTGGCGGACGATTTCCAGGCGCACGGGGTCGCTGAGCGCATAGAGCAGGCGTTCAAGAATGAGGTAGTCGGGGTTGGGATGTTTATAGGCTCGCATGGt             >  7:17720/1‑149 (MQ=255)                                                                                                                                    gACCTAGATCCAGCTCGCCTCTGCTGGCCTCGGCCTCGCCGGCCTGGTGGCGGACGATTTCCAGGCGCACGGGGTCGCTGAGCGCATAGAGCAGGCGTTCAAGAATGAGGTCGTCGGGGTTGGGATGTTTATAGGCTCGCATGGTTGAc         <  3:210023/149‑1 (MQ=255)                                                                                                                                      ccTCCATCCAGCTCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGTGGCGGACGATTTCCAGGCGCACGGGGTCGCTGAGCGCATAGAGCAGGCGTTCAAGAATGAGGTCGTCGGGGTTGGGATGt                              >  4:184484/1‑126 (MQ=255)                                                                                                                                      ccTCCATCCAGCTCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGTGGCGGACGATTTCCAGGCGCACGGGGTCGCTGAGCGCATAGAGCAGGCGTTCAAGAATGAGGTCGTCGGGGTTGGGATGt                              <  3:184484/126‑1 (MQ=255)                                                                                                                                        tccatccaGCTCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGTGGCGGACGATTTCCAGGCGCACGGGGTCGCTGAGCGCATTGAGCAGGCGTTCAAGAATGAGGTCGTCGGGGTTGGGATGTTTATAGGCTCGCATGGTTGACATGa     >  1:236874/1‑149 (MQ=255)                                                                                                                                           atccaGCTCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGTGGCGGACGATTTCCAGGCGCACGGGGTCGCTGAGCGCATAGAGCAGGCGTTCAAGAATGAGGTCGTCGGGGTTGGGATGTTTATAGGCTCGCATGGTTGACATGATaa  >  5:78815/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                             CAGCCCGGGAAACCGCTCGCCCAGCATCTCGCTACGCAGCGAATTCATATGGGTAGTCCCCACATTGCGGGTTTGCACCAGCCCTGCATCACGCAACACACGGAAGTGGTGGGACATGCTCGACTTCGGCCGACCTCCATCCAGCTCGCCACAGCTGGCCTCGGCCACGCCGGCCAGGTGGCGGACGATTTCCAGGCGCACGGGGTCGCTGAGCGCATAGAGCAGGCGTTCAAGAATGAGGTCGTCGGGGTTGGGATGTTTATAGGCTCGCATGGTTGACATGATAA  >  NC_002947/1431563‑1431849

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.