New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2505333	30 (0.600)	4 (0.080)	4/244	NT	10.5%	coding (1120/1146 nt)	yliI	aldose sugar dehydrogenase
	?	NC_002947	= 2505360	40 (0.840)					intergenic (+1/‑41)	yliI/PP_2199	aldose sugar dehydrogenase/hypothetical protein

GCAGGAATTGATCCGCTTGCAACTGGATGGCGACAAGGTGGTGCACGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCGCCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCCTCTACCAGCAAGCCCTGAGCACTCGGGGCTACGTTGCTGACCCTGCCCAGGCCCGC  >  NC_002947/2505188‑2505478                                                                                                                                                  |                                                                                                                                                  gCAGGAATTGATCCGCTTGCAACTGGATGGCGACAAGGTGGTGCACGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTAc                                                                                                                                                <  5:204904/149‑1 (MQ=255)            tCCGCTTGCAACTGGATGGCGACAAGGTGGTGCACGAAGAGCGGTTGCTCGGGTACCTGAAGGCGCGTATCCGTGATGTGCTGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGc                                                                                                                                     <  5:234217/149‑1 (MQ=255)            cccGCTTGCAACTGGATGGCGACAAGGTGGTGCACGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGc                                                                                                                                     <  5:238760/148‑1 (MQ=255)                cTTGCAACTGGATGGCGACAAGGTGGTGCACGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCgtcagtcggccaggccga                                                                                                                                 >  6:260828‑M1/1‑131 (MQ=255)                          gATGGCGACAAGGTGGTGCACGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGAc                                                                                                                        <  6:132790/148‑1 (MQ=255)                                 aCAAGGTGGTGCACGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCGCCt                                                                                                                >  8:145577/1‑149 (MQ=255)                                      gtggtgCACGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCgtcagtcggccaggccgaccttgagtagcgcgccatcctt                                                                                                           <  5:260828‑M1/149‑41 (MQ=255)                                           gCACGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCGCCTGCACCGAggg                                                                                                      >  6:105276/1‑149 (MQ=255)                                              cGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCGCCTGCACCGAGGGTGa                                                                                                   <  5:105276/149‑1 (MQ=255)                                                     cGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACgcgc                                                                                                                    <  5:262118‑M2/125‑5 (MQ=255)                                                     cGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACgcgc                                                                                                                    >  6:262118‑M2/1‑121 (MQ=255)                                                         tGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGAGGGTGGGGCCAGATGGTTACCTGTATGTACTGAACGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGACGACTGACGCGAGCCTGCACCGAGGGTGACAGTCggg                                                                                           >  5:94688/1‑146 (MQ=255)                                                          gCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCGCCTGCACCGAGGGTGa                                                                                                   <  7:283214/137‑1 (MQ=255)                                                          gCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCGCCTGCACCGAGGGTGa                                                                                                   >  8:283214/1‑137 (MQ=255)                                                                    cTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCgtcagtcggccaggccgaccttgagtagcgcgccatcc                                                                                                             <  4:81326‑M1/117‑39 (MQ=255)                                                                    cTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCgtcagtcggccaggccgaccttgagtagcgcgccatcc                                                                                                             >  3:81326‑M1/1‑79 (MQ=255)                                                                       aaGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCGCCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGcc                                                                          >  3:72702/1‑149 (MQ=255)                                                                              gTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCGCCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGAcc                                                                   <  7:145577/149‑1 (MQ=255)                                                                                 tCCGTGATGTGCTGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATTGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCGCCTGCACCGAGGGTGACAGTCGTGTAGAATGCGGCATGGCCCTCGAcccc                                                                 <  6:94688/148‑1 (MQ=255)                                                                                 tCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCGTGGCCGACTGACGCGCGCCTACACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGAccccc                                                                <  1:72170/149‑1 (MQ=255)                                                                                  ccGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCGCCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGAccccc                                                                >  6:195420/1‑148 (MQ=255)                                                                                   cGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCGCCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCa                                                               >  1:282607/1‑148 (MQ=255)                                                                                    gTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCGCCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCaaa                                                             >  5:299351/1‑149 (MQ=255)                                                                                     tGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCGCCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAAc                                                            <  4:72702/149‑1 (MQ=255)                                                                                          tgCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCGCCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCctc                                                        <  2:282607/148‑1 (MQ=255)                                                                                            cGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCGCCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCCTCTAc                                                     <  6:307458/149‑1 (MQ=255)                                                                                                    gCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCGCCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCCTCTACCAGCAAGc                                             >  3:302966/1‑149 (MQ=255)                                                                                                          tGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCGCCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCCTCTACCAGCAAGCCCTGAg                                       <  6:299351/149‑1 (MQ=255)                                                                                                                 cTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCGCCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCCTCTACCAGCAAGCCCTGAGCACTCgg                                >  5:34112/1‑149 (MQ=255)                                                                                                                    tatgtaCTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCGCCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGAcccc                                                                 >  1:280232/1‑113 (MQ=255)                                                                                                                    tatgtaCTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCGCCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGAcccc                                                                 <  2:280232/113‑1 (MQ=255)                                                                                                                           tGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCGCCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCCTCTACCAGCAAGCCCTGAGCACTCGGGGCTACGTTg                      >  5:98736/1‑149 (MQ=255)                                                                                                                                 aTGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCGCCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCCTCTACCAGCAAGCCCTGAGCACTCGGGGCTACGTTGCTGa                  >  5:119541/1‑147 (MQ=255)                                                                                                                                 aTGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCGCCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCCTCTACCAGCAAGCCCTGAGCACTCGGGGCTACGTTGCTGa                  <  6:119541/147‑1 (MQ=255)                                                                                                                                      aaGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACgcgcgccatccttgtcatcggtcagtacatacaggtaaccatctggccccacccgcacatcacggatacgcgccttcaggtcaccgagcaaccgctcttcgtgcaccac           <  5:260828‑M2/149‑110 (MQ=255)                                                                                                                                      aaGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGTGCCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCCTCTACCAGCAAGCCCTGAGCACTCGGGGCTACGTTGCTGACCCTGcc           >  8:183807/1‑149 (MQ=255)                                                                                                                                      aaGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCGCCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCCTCTACCAGCAAGCCCTGAGCACTCGGGGCTACGTTGCTGACCCTGcc           >  8:274992/1‑149 (MQ=255)                                                                                                                                        ggATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACgcgcgccatccttgtcatcggtcagtacatacaggtaaccatctggccccacccgcacatcacggatacgcgccttcag                                         <  4:81326‑M2/117‑80 (MQ=255)                                                                                                                                        ggATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACgcgcgccatccttgtcatcggtcagtacatacaggtaaccatctggccccacccgcacatcacggatacgcgccttcag                                         >  3:81326‑M2/1‑38 (MQ=255)                                                                                                                                        ggATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCGCCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCCTCTACCAGCAAGCCCTGAGCACTCGGGGCTACGTTGCTGACCCTGcc           >  7:204741/1‑147 (MQ=255)                                                                                                                                               gcgcgtcagtcggccaggccgaccttgagtagcgcgccatccttgtcatcggtcagtacatacaggtaaccatctggccccacccgcacatcacggatacgcgccttcaggtcaccgagcaaccg                          >  6:262118‑M1/1‑4 (MQ=255)                                                                                                                                               gcgcgtcagtcggccaggccgaccttgagtagcgcgccatccttgtcatcggtcagtacatacaggtaaccatctggccccacccgcacatcacggatacgcgccttcaggtcaccgagcaaccg                          <  5:262118‑M1/125‑122 (MQ=255)                                                                                                                                               gcgcTACTCAAGGTCGGCCTGGCCGACTGACGCGCGCCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCCTCTACCAGCAAGCCCTGAGCACTCGGGGCTACGTTGCTGACCCTGCCCAGGCCcgc  >  7:128692/1‑149 (MQ=255)                                                                                                                                                  cTACTCAAGGTCGGCCTGGCCGACTGACGCGCGCCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCctct                                                       <  6:57576/93‑1 (MQ=255)                                                                                                                                                  cTACTCAAGGTCGGCCTGGCCGACTGACGCGCGCCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCctct                                                       >  5:57576/1‑93 (MQ=255)                                                                                                                                                  |                                                                                                                                                  GCAGGAATTGATCCGCTTGCAACTGGATGGCGACAAGGTGGTGCACGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCGCCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCCTCTACCAGCAAGCCCTGAGCACTCGGGGCTACGTTGCTGACCCTGCCCAGGCCCGC  >  NC_002947/2505188‑2505478

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.